Lag0015793 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015793
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag protease polyprotein
Location	chr12: 24395848 .. 24397744 (-)
RNA-Seq Expression	Lag0015793
Synteny	Lag0015793

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCCCGAGCACGAGGTCGTGGAAGAGGTCAAGGAAGAGGTCGTGGTAGGGGTCGTACAGCCCCTGAACAAGCTGTGCCACCTGTGGAGCAAGGAGGACATCTACCAGAAAACCCACAAGTGGAACAGCCGGATGGACAGTCGGGGCCTGCGGCAAGACCTGTCATAGTGGATATCCAGGCAATAGTTCAGACCGCGCCTAAGAACAACGAAGCCACCCTATCGCGAGAGGCTAGGTGCTTAAGAGATTTTAGGAAGTGGGATCCCTGTCCGTTCGATGGAGCCTCAAGGGACCCCACGGTGGCAGAGTTGTGGTTGTCCTCCATCGAGACTGTCTTTCGCCACATGAACTGCCCGGAGGACCAGAAAGTGTACTGTGTCGTGTTCTTGTTACGAGATAACGCCTTGATTTGGTGGCAATCGATCGAAAGGACTATAGACGTCAGCAATGGACCTGTCACATGGACTCAGTTCAGGGAGGAGTTCTTTAGGAAGTATTACCCTGCAGCCTCCCGATTGAAGAAGCAAGCGGAATTTGTGGCTCTTACGCAGGGAAATCGAACCGTAGAGGAATACGAGACAGAGTTCGCCAGACTGTCTCGGTTTGCTCCTGCCCTAGTAGCTCTAGAGGCTGATATGGTAGAACGTTTCATTACAGGCTTAAAAAAGAGATTCAGGGCAGTGTAGCGCCCATGAACCCCAAGACTATGCCACAACAGTCAGGGTGGCAGAGCTGATCGATCGATGACTGTCAATTGTCTCTTCAGAACCTTCCTCGGGTGATAAGCGAAGGTACGATTAGATGAGCTCGAACACACAGCGGGGTCACTGTTACCCTAGATGAGGTCTGCCCCAGGACCGTCGATAGAAAGCACAGAATCAGCCAGGGCCTAACCAGGATAGGCCATTATCTCAGACGTGTAGGAAGTACCACTGGGGTCATTTCTTTGCAGGGACCCGTGTTTGTTTCAAATGTGGCCGGGAAGGGCATATTGCGCCGAATTGTAATCAGAAGAAAACTAATTATGCCGACCAGCCGTCCAATTCAAATCAGGCATCCAGGGTAAGACCAGCACAACATCAGGGCAAGATATTTGCCACTACCCGACAAGAGGCAGAGAACCTTAACGCAATGGTGACAGGTACCATCTCTATCCTCGGCCATTATGCTTTTGTGTTGTTTGATTCGGGTTCAACGCATTCTTGTATTTTTGCATCATTTGTAAGTCAAGCCAACCTAGAACTAGAGCCGCTGGTCTATGTTTTGTCAGTCTCAACCCCAGCGGGGATAATGTTACTTGCTAGTGAAGCGGTGAAAGCCTGCCAAATGTTAGTGTCTGATCGATTAATGGATGTGACATTGATCGCCCTTGATATGAGTGATTTTGATGTTATCTTGGGAATGGAATGGTTGGCTTCTAATTATGCCAACATAGATCGTTATCGCAAGGAGGTTATCTTTAACCCTCCGTCAGAGGCAAGCTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAAAAGCAACAGTCAAAATAAAAAGAAATAGAAGAATATGCAGTAAGGAATGCGTGAGCAAACAAAATATTTCAACAAAAAGACTACGCGCTCAAATTCTTCTCCTTCAGTCTTCCGACCAGGCTCTTCTTCTTCATCACCTTCTCTTTCCACAGGCGGCGGCGGAATCCAGGGGTTCAAGAGGTCATCAGGGAATACGGGTAAAGCCGAAAATGGGTTGGAAAAATTCATCTGCAAGGCTACCCTTAATGCGTCATCCCTCCTTTTTACATAAGTCCAGAAAGTCTGAAATTGCCTTTTAG

mRNA sequence

ATGCCTCCCCGAGCACGAGGTCGTGGAAGAGGTCAAGGAAGAGGTCGTGGTAGGGGTCGTACAGCCCCTGAACAAGCTGTGCCACCTGTGGAGCAAGGAGGACATCTACCAGAAAACCCACAAGTGGAACAGCCGGATGGACAGTCGGGGCCTGCGGCAAGACCTGTCATAGTGGATATCCAGGCAATAGTTCAGACCGCGCCTAAGAACAACGAAGCCACCCTATCGCGAGAGGCTAGGTGCTTAAGAGATTTTAGGAAGTGGGATCCCTGTCCGTTCGATGGAGCCTCAAGGGACCCCACGGTGGCAGAGTTGTGGTTGTCCTCCATCGAGACTGTCTTTCGCCACATGAACTGCCCGGAGGACCAGAAAGTGTACTGTGTCGTGTTCTTGTTACGAGATAACGCCTTGATTTGGTGGCAATCGATCGAAAGGACTATAGACGTCAGCAATGGACCTGTCACATGGACTCAGTTCAGGGAGGAGTTCTTTAGGAAGTATTACCCTGCAGCCTCCCGATTGAAGAAGCAAGCGGAATTTGTGGCTCTTACGCAGGGAAATCGAACCGTAGAGGAATACGAGACAGAGTTCGCCAGACTGTCTCGGTTTGCTCCTGCCCTAGTAGCTCTAGAGGCTGATATGAACCTTCCTCGGGTGATAAGCGAAGGGACCCGTGTTTGTTTCAAATGTGGCCGGGAAGGGCATATTGCGCCGAATTGTAATCAGAAGAAAACTAATTATGCCGACCAGCCGTCCAATTCAAATCAGGCATCCAGGGTAAGACCAGCACAACATCAGGGCAAGATATTTGCCACTACCCGACAAGAGGCAGAGAACCTTAACGCAATGGTGACAGGTACCATCTCTATCCTCGGCCATTATGCTTTTGTGTTGTTTGATTCGGGTTCAACGCATTCTTGTATTTTTGCATCATTTGTAAGTCAAGCCAACCTAGAACTAGAGCCGCTGGTCTATGTTTTGTCAGTCTCAACCCCAGCGGGGATAATGTTACTTGCTAGTGAAGCGGTGAAAGCCTGCCAAATGTTAGTGTCTGATCGATTAATGGATGTGACATTGATCGCCCTTGATATGAGTGATTTTGATGTTATCTTGGGAATGGAATGGTTGGCTTCTAATTATGCCAACATAGATCGTTATCGCAAGGAGGCGGCGGCGGAATCCAGGGGTTCAAGAGGTCATCAGGGAATACGGGTAAAGCCGAAAATGGGTTGGAAAAATTCATCTGCAAGGCTACCCTTAATGCGTCATCCCTCCTTTTTACATAAGTCCAGAAAGTCTGAAATTGCCTTTTAG

Coding sequence (CDS)

ATGCCTCCCCGAGCACGAGGTCGTGGAAGAGGTCAAGGAAGAGGTCGTGGTAGGGGTCGTACAGCCCCTGAACAAGCTGTGCCACCTGTGGAGCAAGGAGGACATCTACCAGAAAACCCACAAGTGGAACAGCCGGATGGACAGTCGGGGCCTGCGGCAAGACCTGTCATAGTGGATATCCAGGCAATAGTTCAGACCGCGCCTAAGAACAACGAAGCCACCCTATCGCGAGAGGCTAGGTGCTTAAGAGATTTTAGGAAGTGGGATCCCTGTCCGTTCGATGGAGCCTCAAGGGACCCCACGGTGGCAGAGTTGTGGTTGTCCTCCATCGAGACTGTCTTTCGCCACATGAACTGCCCGGAGGACCAGAAAGTGTACTGTGTCGTGTTCTTGTTACGAGATAACGCCTTGATTTGGTGGCAATCGATCGAAAGGACTATAGACGTCAGCAATGGACCTGTCACATGGACTCAGTTCAGGGAGGAGTTCTTTAGGAAGTATTACCCTGCAGCCTCCCGATTGAAGAAGCAAGCGGAATTTGTGGCTCTTACGCAGGGAAATCGAACCGTAGAGGAATACGAGACAGAGTTCGCCAGACTGTCTCGGTTTGCTCCTGCCCTAGTAGCTCTAGAGGCTGATATGAACCTTCCTCGGGTGATAAGCGAAGGGACCCGTGTTTGTTTCAAATGTGGCCGGGAAGGGCATATTGCGCCGAATTGTAATCAGAAGAAAACTAATTATGCCGACCAGCCGTCCAATTCAAATCAGGCATCCAGGGTAAGACCAGCACAACATCAGGGCAAGATATTTGCCACTACCCGACAAGAGGCAGAGAACCTTAACGCAATGGTGACAGGTACCATCTCTATCCTCGGCCATTATGCTTTTGTGTTGTTTGATTCGGGTTCAACGCATTCTTGTATTTTTGCATCATTTGTAAGTCAAGCCAACCTAGAACTAGAGCCGCTGGTCTATGTTTTGTCAGTCTCAACCCCAGCGGGGATAATGTTACTTGCTAGTGAAGCGGTGAAAGCCTGCCAAATGTTAGTGTCTGATCGATTAATGGATGTGACATTGATCGCCCTTGATATGAGTGATTTTGATGTTATCTTGGGAATGGAATGGTTGGCTTCTAATTATGCCAACATAGATCGTTATCGCAAGGAGGCGGCGGCGGAATCCAGGGGTTCAAGAGGTCATCAGGGAATACGGGTAAAGCCGAAAATGGGTTGGAAAAATTCATCTGCAAGGCTACCCTTAATGCGTCATCCCTCCTTTTTACATAAGTCCAGAAAGTCTGAAATTGCCTTTTAG

Protein sequence

MPPRARGRGRGQGRGRGRGRTAPEQAVPPVEQGGHLPENPQVEQPDGQSGPAARPVIVDIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRDPTVAELWLSSIETVFRHMNCPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQFREEFFRKYYPAASRLKKQAEFVALTQGNRTVEEYETEFARLSRFAPALVALEADMNLPRVISEGTRVCFKCGREGHIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHYAFVLFDSGSTHSCIFASFVSQANLELEPLVYVLSVSTPAGIMLLASEAVKACQMLVSDRLMDVTLIALDMSDFDVILGMEWLASNYANIDRYRKEAAAESRGSRGHQGIRVKPKMGWKNSSARLPLMRHPSFLHKSRKSEIAF

Homology

[Close]

BLAST of Lag0015793 vs. NCBI nr
Match: KAA0051357.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-82
Identity = 197/492 (40.04%), Postives = 257/492 (52.24%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPEQAVPPVEQGGHLPENPQVEQPDGQSGPAARPVIV 60
           MPPR  AR  GRG GRGRG GR  PE+   P               P     PA  PV  
Sbjct: 1   MPPRRGARRGGRG-GRGRGAGRVQPEKPASPT--------------PAPAPAPAPAPVPA 60

Query: 61  DIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRDPTVAELWLSSIETVFRHMN 120
              A+V  AP+     LS EA+ LRDFRK++P  FDG+  DPT A++WLSS+ET+FR+M 
Sbjct: 61  PAPALVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMK 120

Query: 121 CPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQFREEFFRKYYPAASRLKKQA 180
           CPEDQKV C VF+L D    WW++ ER +      +TW QF+E F+ K++ A+ R  K+ 
Sbjct: 121 CPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQ 180

Query: 181 EFVALTQGNRTVEEYETEFARLSRFAPALVALEA-------------------------- 240
           EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA                          
Sbjct: 181 EFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATH 240

Query: 241 --------DMNLPRVISE------------------------------------------ 300
                   D++L  + +                                           
Sbjct: 241 ADALRLAVDLSLQEMANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSGGEFRSFQQKPF 300

Query: 301 -------------------------GTRVCFKCGREGHIAPNCNQKKTNYADQPSNSNQA 360
                                    GTR CFKC +EGH A  C  + T  A      NQ 
Sbjct: 301 EAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGIA-----QNQG 360

Query: 361 SRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHYAFVLFDSGSTHSCIFASFVSQAN 390
           +    A HQG++FAT R EAE    +VTGT+ +LGHYA VLFDSGS+HS I ++FVS A 
Sbjct: 361 A---GAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVSHAR 420

[Close]

BLAST of Lag0015793 vs. NCBI nr
Match: KAA0055501.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-81
Identity = 197/460 (42.83%), Postives = 250/460 (54.35%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPEQAVPPVEQGGHLPENPQVEQPDGQSGPAARPVIV 60
           MPPR  AR  GRG GRG G GR  PE      EQ    P  P          PA  P   
Sbjct: 193 MPPRRGARRGGRG-GRGMGAGRVQPEMR----EQQQPAPPAP---------APAPAPAPA 252

Query: 61  DIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRDPTVAELWLSSIETVFRHMN 120
              A V  AP+     LS EA+ LRDFRK++P  FDG+  DPT A+LWLSS+ET+FR+M 
Sbjct: 253 PAPAPVPVAPQVVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQLWLSSLETIFRYMK 312

Query: 121 CPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQFREEFFRKYYPAASRLKKQA 180
           CPEDQKV C VF+L D    WW++ ER +      +TW QF+E F+ K++ A+ R  K  
Sbjct: 313 CPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKENFYAKFFSASLRDAKWQ 372

Query: 181 EFVALTQGNRTVEEYETEFARLSRFAPALVALE---ADMNLPRVISE------------- 240
           EF+ L QG+ TVE+Y+ EF  LSRFAP ++A E   AD    R  S              
Sbjct: 373 EFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADNLQERANSSKISGRGSTSGQKR 432

Query: 241 -----------------------------------------------------GTRVCFK 300
                                                                GTR CFK
Sbjct: 433 KAEQQPVPVPQRNFRSGGEFRRFQQKPFEAGEAARGKLLCTTCGKHHLGRYLFGTRTCFK 492

Query: 301 CGREGHIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTIS 360
           C +EGH A  C  + T  A      NQ +    A HQG++FAT + EAE    +VTGT+ 
Sbjct: 493 CKQEGHTADRCPLRLTGNA-----QNQGA---GAPHQGRVFATNKTEAERAGTVVTGTLP 552

Query: 361 ILGHYAFVLFDSGSTHSCIFASFVSQANLELEPLVYVLSVSTPAGIMLLASEAVKACQML 390
           +LGHYA VLFDSGS+HS I ++FV  A LE+EPL +VLSVSTP+G  +L+ E VKACQ+ 
Sbjct: 553 VLGHYALVLFDSGSSHSFISSAFVLHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIE 612

[Close]

BLAST of Lag0015793 vs. NCBI nr
Match: KAA0035523.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.2 bits (801), Expect = 3.7e-81
Identity = 190/452 (42.04%), Postives = 251/452 (55.53%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPEQAVPPVEQGGHLPENPQVEQPDGQSGPAARPVIV 60
           MP R  AR  GRG GRGRG GR  PE                + +Q      PA  P +V
Sbjct: 351 MPLRRGARKGGRG-GRGRGAGRVQPEMW--------------EQQQQPALPAPAPAPALV 410

Query: 61  DIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRDPTVAELWLSSIETVFRHMN 120
            +  + Q  P      LS EA+ LRDFRK++P  FDG+  DPT A+LWLSS+ET+FR+M 
Sbjct: 411 PV--VPQVVPDQ----LSAEAKHLRDFRKYNPTTFDGSLEDPTRAQLWLSSLETIFRYMK 470

Query: 121 CPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQFREEFFRKYYPAASRLKKQA 180
           CPEDQKV C VF+L D    WW++ ER +    G +TW  F+E F+ K++ A+ R  K+ 
Sbjct: 471 CPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVGQITWQHFKESFYAKFFSASLRDAKRQ 530

Query: 181 EFVALTQGNRTVEEYETEFARLSRFAPALVALEADM-------------------NLPRV 240
           EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA                       P  
Sbjct: 531 EFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVAGKGLTSGQKRKAEQQPNP 590

Query: 241 ISE------------------------------------------GTRVCFKCGREGHIA 300
           + +                                          GTR CFKC +EGH A
Sbjct: 591 VPQRNFRPGGEFRRFQQKPFEAKEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTA 650

Query: 301 PNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHYAFV 360
             C  + T         N  ++   A HQGK+FAT + EAE    +VTGT+ +LGHYA V
Sbjct: 651 DRCPMRLT--------GNAQNQEAGAPHQGKVFATKKTEAEMAGTVVTGTLPVLGHYALV 710

Query: 361 LFDSGSTHSCIFASFVSQANLELEPLVYVLSVSTPAGIMLLASEAVKACQMLVSDRLMDV 390
           LFDSGS+HS I ++FV  A LE+EPL +VLSVSTP+G  +L++E VKACQ+ ++  +++V
Sbjct: 711 LFDSGSSHSFISSAFVLHACLEVEPLHHVLSVSTPSGECMLSNEKVKACQIEIAGHVIEV 770

[Close]

BLAST of Lag0015793 vs. NCBI nr
Match: KAA0040871.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 6.2e-81
Identity = 196/479 (40.92%), Postives = 255/479 (53.24%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPE-----QAVPPVEQGGH--------------LPEN 60
           MPPR  AR  GRG GRGR  GR  PE     QA  P     H              +   
Sbjct: 219 MPPRRGARRGGRG-GRGRRAGRVQPEVQPVAQATDPAAPVTHADLAAMEQRFRDLIMQMR 278

Query: 61  PQVEQPDGQSGPAARPVIVDIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRD 120
            Q +       PA+ P      A V  AP+     LS EA+ LRDFRK++P  FDG+  D
Sbjct: 279 EQQQSAPPAPAPASAPAPAPASAPVPVAPQVVSDQLSTEAKHLRDFRKYNPTTFDGSLED 338

Query: 121 PTVAELWLSSIETVFRHMNCPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQF 180
           PT A+LWLSS+ET+FR+M CPEDQKV C VF+  D    WW++ ER +      +TW QF
Sbjct: 339 PTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMFTDRGTAWWETAERMLGGDVSQITWQQF 398

Query: 181 REEFFRKYYPAASRLKKQAEFVALTQGNRTVEEYETEFARLSRFAPALVALEADM--NLP 240
           +E F+ K++ A+ R  K+ EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA    NL 
Sbjct: 399 KESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARANNLQ 458

Query: 241 RVISE------------------------------------------------------- 300
             ++                                                        
Sbjct: 459 EGVNSSKTAGRGSTSGQKRKAEQQSVPVPQRNFRSGGEFRRFQQKPFEAGEAARGKSLCT 518

Query: 301 ------------GTRVCFKCGREGHIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIF 360
                       GTR CFKC +EGH A  C  + T  A      NQ +    A HQG++F
Sbjct: 519 TCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGNA-----QNQGA---GAPHQGRVF 578

Query: 361 ATTRQEAENLNAMVTGTISILGHYAFVLFDSGSTHSCIFASFVSQANLELEPLVYVLSVS 390
           AT + EAE    +VTGT+ +LGHYA VLFDSGS+HS I ++FV  A LE+EPL +VLSVS
Sbjct: 579 ATNKTEAERAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVLHARLEVEPLHHVLSVS 638

[Close]

BLAST of Lag0015793 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.3 bits (791), Expect = 5.3e-80
Identity = 202/515 (39.22%), Postives = 259/515 (50.29%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPE-----QAVPPVEQGGHL----------------- 60
           MPPR  AR  GRG GRGRG GR  PE     QA  P     H                  
Sbjct: 228 MPPRRGARRGGRG-GRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMR 287

Query: 61  -PENPQVEQPDGQSGPAARPVIVDIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDG 120
             + P    P     PA  PV     A V  AP+     LS EA+ LRDFRK++P  FDG
Sbjct: 288 EQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDG 347

Query: 121 ASRDPTVAELWLSSIETVFRHMNCPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVT 180
           +  DPT A++WLSS+ET+FR+M CPEDQKV C VF+L D    WW++ ER +      +T
Sbjct: 348 SLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQIT 407

Query: 181 WTQFREEFFRKYYPAASRLKKQAEFVALTQGNRTVEEYETEFARLSRFAPALVALEA--- 240
           W QF+E F+ K++ A+ R  K+ EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA   
Sbjct: 408 WQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARA 467

Query: 241 -------------------------------DMNLPRVISE------------------- 300
                                          D++L    +                    
Sbjct: 468 DKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQ 527

Query: 301 ------------------------------------------------GTRVCFKCGREG 360
                                                           GTR CFKC +EG
Sbjct: 528 PVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEG 587

Query: 361 HIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHY 390
           H A  C  + T  A      NQ +    A HQG++FAT R EAE    +VTGT+ +LGHY
Sbjct: 588 HTADRCPLRLTGIA-----QNQGA---GAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHY 647

[Close]

BLAST of Lag0015793 vs. ExPASy TrEMBL
Match: A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 9.4e-83
Identity = 197/492 (40.04%), Postives = 257/492 (52.24%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPEQAVPPVEQGGHLPENPQVEQPDGQSGPAARPVIV 60
           MPPR  AR  GRG GRGRG GR  PE+   P               P     PA  PV  
Sbjct: 1   MPPRRGARRGGRG-GRGRGAGRVQPEKPASPT--------------PAPAPAPAPAPVPA 60

Query: 61  DIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRDPTVAELWLSSIETVFRHMN 120
              A+V  AP+     LS EA+ LRDFRK++P  FDG+  DPT A++WLSS+ET+FR+M 
Sbjct: 61  PAPALVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMK 120

Query: 121 CPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQFREEFFRKYYPAASRLKKQA 180
           CPEDQKV C VF+L D    WW++ ER +      +TW QF+E F+ K++ A+ R  K+ 
Sbjct: 121 CPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQ 180

Query: 181 EFVALTQGNRTVEEYETEFARLSRFAPALVALEA-------------------------- 240
           EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA                          
Sbjct: 181 EFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATH 240

Query: 241 --------DMNLPRVISE------------------------------------------ 300
                   D++L  + +                                           
Sbjct: 241 ADALRLAVDLSLQEMANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSGGEFRSFQQKPF 300

Query: 301 -------------------------GTRVCFKCGREGHIAPNCNQKKTNYADQPSNSNQA 360
                                    GTR CFKC +EGH A  C  + T  A      NQ 
Sbjct: 301 EAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRLTGIA-----QNQG 360

Query: 361 SRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHYAFVLFDSGSTHSCIFASFVSQAN 390
           +    A HQG++FAT R EAE    +VTGT+ +LGHYA VLFDSGS+HS I ++FVS A 
Sbjct: 361 A---GAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVSHAR 420

[Close]

BLAST of Lag0015793 vs. ExPASy TrEMBL
Match: A0A5A7SY75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001800 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.8e-81
Identity = 190/452 (42.04%), Postives = 251/452 (55.53%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPEQAVPPVEQGGHLPENPQVEQPDGQSGPAARPVIV 60
           MP R  AR  GRG GRGRG GR  PE                + +Q      PA  P +V
Sbjct: 351 MPLRRGARKGGRG-GRGRGAGRVQPEMW--------------EQQQQPALPAPAPAPALV 410

Query: 61  DIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRDPTVAELWLSSIETVFRHMN 120
            +  + Q  P      LS EA+ LRDFRK++P  FDG+  DPT A+LWLSS+ET+FR+M 
Sbjct: 411 PV--VPQVVPDQ----LSAEAKHLRDFRKYNPTTFDGSLEDPTRAQLWLSSLETIFRYMK 470

Query: 121 CPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQFREEFFRKYYPAASRLKKQA 180
           CPEDQKV C VF+L D    WW++ ER +    G +TW  F+E F+ K++ A+ R  K+ 
Sbjct: 471 CPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVGQITWQHFKESFYAKFFSASLRDAKRQ 530

Query: 181 EFVALTQGNRTVEEYETEFARLSRFAPALVALEADM-------------------NLPRV 240
           EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA                       P  
Sbjct: 531 EFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVAGKGLTSGQKRKAEQQPNP 590

Query: 241 ISE------------------------------------------GTRVCFKCGREGHIA 300
           + +                                          GTR CFKC +EGH A
Sbjct: 591 VPQRNFRPGGEFRRFQQKPFEAKEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTA 650

Query: 301 PNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHYAFV 360
             C  + T         N  ++   A HQGK+FAT + EAE    +VTGT+ +LGHYA V
Sbjct: 651 DRCPMRLT--------GNAQNQEAGAPHQGKVFATKKTEAEMAGTVVTGTLPVLGHYALV 710

Query: 361 LFDSGSTHSCIFASFVSQANLELEPLVYVLSVSTPAGIMLLASEAVKACQMLVSDRLMDV 390
           LFDSGS+HS I ++FV  A LE+EPL +VLSVSTP+G  +L++E VKACQ+ ++  +++V
Sbjct: 711 LFDSGSSHSFISSAFVLHACLEVEPLHHVLSVSTPSGECMLSNEKVKACQIEIAGHVIEV 770

[Close]

BLAST of Lag0015793 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.6e-80
Identity = 202/515 (39.22%), Postives = 259/515 (50.29%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPE-----QAVPPVEQGGHL----------------- 60
           MPPR  AR  GRG GRGRG GR  PE     QA  P     H                  
Sbjct: 228 MPPRRGARRGGRG-GRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMR 287

Query: 61  -PENPQVEQPDGQSGPAARPVIVDIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDG 120
             + P    P     PA  PV     A V  AP+     LS EA+ LRDFRK++P  FDG
Sbjct: 288 EQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDG 347

Query: 121 ASRDPTVAELWLSSIETVFRHMNCPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVT 180
           +  DPT A++WLSS+ET+FR+M CPEDQKV C VF+L D    WW++ ER +      +T
Sbjct: 348 SLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQIT 407

Query: 181 WTQFREEFFRKYYPAASRLKKQAEFVALTQGNRTVEEYETEFARLSRFAPALVALEA--- 240
           W QF+E F+ K++ A+ R  K+ EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA   
Sbjct: 408 WQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARA 467

Query: 241 -------------------------------DMNLPRVISE------------------- 300
                                          D++L    +                    
Sbjct: 468 DKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQ 527

Query: 301 ------------------------------------------------GTRVCFKCGREG 360
                                                           GTR CFKC +EG
Sbjct: 528 PVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEG 587

Query: 361 HIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHY 390
           H A  C  + T  A      NQ +    A HQG++FAT R EAE    +VTGT+ +LGHY
Sbjct: 588 HTADRCPLRLTGIA-----QNQGA---GAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHY 647

[Close]

BLAST of Lag0015793 vs. ExPASy TrEMBL
Match: A0A5A7TSI1 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005780 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.3e-79
Identity = 200/515 (38.83%), Postives = 258/515 (50.10%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPE-----QAVPPVEQGGHL----------------- 60
           MPPR  AR  GRG GRGRG GR  PE     QA  P     H                  
Sbjct: 1   MPPRRGARRGGRG-GRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMR 60

Query: 61  -PENPQVEQPDGQSGPAARPVIVDIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDG 120
             + P    P     PA  PV     A V  AP+     LS EA+ LRDFRK++P  FD 
Sbjct: 61  EQQKPVSPTPAPAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDW 120

Query: 121 ASRDPTVAELWLSSIETVFRHMNCPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVT 180
           +  DPT A++WLSS+ET+FR+M CPEDQKV C +F+L +    WW++ ER +      +T
Sbjct: 121 SLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAIFMLTERGTAWWETTERMLGGDVSQIT 180

Query: 181 WTQFREEFFRKYYPAASRLKKQAEFVALTQGNRTVEEYETEFARLSRFAPALVALEA--- 240
           W QF+E F+ K++ A+ R  K+ EF+ L QG+ TVE+Y+ EF  LSRFAP ++A EA   
Sbjct: 181 WQQFKESFYAKFFSASLRDAKRQEFLNLEQGDLTVEQYDAEFDMLSRFAPEMIATEAARA 240

Query: 241 -------------------------------DMNLPRVISE------------------- 300
                                          D++L    +                    
Sbjct: 241 DKFVRGLRLDIQGLVRAFRPVTHADALRLVVDLSLQERANSSKTAGRGSTSGQKRKAEQQ 300

Query: 301 ------------------------------------------------GTRVCFKCGREG 360
                                                           GTR CFKC +EG
Sbjct: 301 PVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLSRCLFGTRTCFKCRQEG 360

Query: 361 HIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIFATTRQEAENLNAMVTGTISILGHY 390
           H A  C  + T  A      NQ +    A HQG++FAT R EAE    +VTGT+ +LGHY
Sbjct: 361 HTADKCPLRVTGIA-----QNQGA---GAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHY 420

[Close]

BLAST of Lag0015793 vs. ExPASy TrEMBL
Match: A0A5A7VEB0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00920 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 7.0e-78
Identity = 196/479 (40.92%), Postives = 256/479 (53.44%), Query Frame = 0


Query: 1   MPPR--ARGRGRGQGRGRGRGRTAPE-----QAVPPVEQGGH-------------LPENP 60
           MPPR  AR  GRG GRGRG GR  PE     QA  P     H             + +  
Sbjct: 96  MPPRRGARRGGRG-GRGRGAGRVQPEVQPVAQATDPAAPVTHADLAAMEQRFRDLIMQMR 155

Query: 61  QVEQPDGQS-GPAARPVIVDIQAIVQTAPKNNEATLSREARCLRDFRKWDPCPFDGASRD 120
           + +QP   +  PA  P      A +  AP+     LS EA+ LRDFRK++P  FD +  D
Sbjct: 156 EQQQPAPPAPAPAPVPAPAPAPAPIPVAPQVVPNQLSAEAKHLRDFRKYNPTTFDRSLED 215

Query: 121 PTVAELWLSSIETVFRHMNCPEDQKVYCVVFLLRDNALIWWQSIERTIDVSNGPVTWTQF 180
           PT A+LWLSS+ET+FR+M CPEDQKV C VF+L D    WW++ ER +      +TW QF
Sbjct: 216 PTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQF 275

Query: 181 REEFFRKYYPAASRLKKQAEFVALTQGNRTVEEYETEFARLSRFAPALVALE---ADMNL 240
           +E F+ K++ A+ R  K+ EF+ L Q + TVE+Y+ EF  LSRFAP ++A E   AD   
Sbjct: 276 KEGFYVKFFSASLRDAKRQEFLNLEQDDMTVEQYDAEFDMLSRFAPEMIATEAARADNLQ 335

Query: 241 PRVISE------------------------------------------------------ 300
            R  S                                                       
Sbjct: 336 ERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRSSGEFRRFQQKPFEAGEAARGKPLCT 395

Query: 301 ------------GTRVCFKCGREGHIAPNCNQKKTNYADQPSNSNQASRVRPAQHQGKIF 360
                       GTR  FKC +EGH A  C  + T  A      NQ +    A HQG++F
Sbjct: 396 TCGKHHLGRCLFGTRTFFKCRQEGHTANRCPLRLTGNA-----QNQGA---GAPHQGRVF 455

Query: 361 ATTRQEAENLNAMVTGTISILGHYAFVLFDSGSTHSCIFASFVSQANLELEPLVYVLSVS 390
           AT + EAE    +VTGT+ +LGHYA VLFDSGS+HS I ++FV  A LE+EPL +VLSVS
Sbjct: 456 ATNKTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVLHARLEVEPLHHVLSVS 515

The following BLAST results are available for this feature:

BLAST of Lag0015793 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051357.1	1.9e-82	40.04	pol protein [Cucumis melo var. makuwa]	[more]
KAA0055501.1	2.1e-81	42.83	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035523.1	3.7e-81	42.04	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040871.1	6.2e-81	40.92	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	5.3e-80	39.22	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0015793 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0015793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAA8	9.4e-83	40.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7SY75	1.8e-81	42.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]
A0A5D3BPI1	2.6e-80	39.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7TSI1	6.3e-79	38.83	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7VEB0	7.0e-78	40.92	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Lag0015793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 226..242 e-value: 0.0024 score: 27.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 225..241 e-value: 5.4E-5 score: 23.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 227..242 score: 10.213134
None	No IPR available	PFAM	PF08284	RVP_2	coord: 266..390 e-value: 1.0E-30 score: 106.3
None	No IPR available	GENE3D	4.10.60.10		coord: 210..258 e-value: 2.6E-5 score: 25.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 98..213
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 98..213
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 287..377 e-value: 5.55235E-16 score: 71.2136
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 263..394 e-value: 5.4E-14 score: 54.0
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 280..383
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 128..206 e-value: 2.2E-14 score: 53.5
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 222..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015793.1	Lag0015793.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding