Lag0015775 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015775
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr12: 23651324 .. 23651749 (+)
RNA-Seq ExpressionLag0015775
SyntenyLag0015775
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAGTGAAACAACGCTTGGGATACACGAGTTGTTTTATAGTGAGTAGCTCAGGCCGAAGTGGTGGTATAACTTTTTCGTGGAATTCAGATGTGGTGTTCAGCCTGATATCTTTCTCTAATCATCATATTGATGGGTGGATAGAGTGGGACGGAAAACGTTGGCAGATCATTTGGTTTTATGGCTTCTCTGAATCTAATGCTCACCACTATTCATGGAACCTCTTTCGCAAATTGCTGGGCTCTTCGGACACACCTTGGTTGGTGGGTGGCAATTTTAATGCGGTCCTTCAACATGCGAAGAAATCTGGCGAGCGTATGACTGTGGAAAACGAGTTGGATGCCTTCCGGTTGGCACTGAAGGATTGCTCGCTATCTGATATGGGTTTTTCGGGGGACATATATACGTGGTCTAATCGATAG

mRNA sequence

ATGGATATAGTGAAACAACGCTTGGGATACACGAGTTGTTTTATAGTGAGTAGCTCAGGCCGAAGTGGTGGTATAACTTTTTCGTGGAATTCAGATGTGGTGTTCAGCCTGATATCTTTCTCTAATCATCATATTGATGGGTGGATAGAGTGGGACGGAAAACGTTGGCAGATCATTTGGTTTTATGGCTTCTCTGAATCTAATGCTCACCACTATTCATGGAACCTCTTTCGCAAATTGCTGGGCTCTTCGGACACACCTTGGTTGGTGGGTGGCAATTTTAATGCGGTCCTTCAACATGCGAAGAAATCTGGCGAGCGTATGACTGTGGAAAACGAGTTGGATGCCTTCCGGTTGGCACTGAAGGATTGCTCGCTATCTGATATGGGTTTTTCGGGGGACATATATACGTGGTCTAATCGATAG

Coding sequence (CDS)

ATGGATATAGTGAAACAACGCTTGGGATACACGAGTTGTTTTATAGTGAGTAGCTCAGGCCGAAGTGGTGGTATAACTTTTTCGTGGAATTCAGATGTGGTGTTCAGCCTGATATCTTTCTCTAATCATCATATTGATGGGTGGATAGAGTGGGACGGAAAACGTTGGCAGATCATTTGGTTTTATGGCTTCTCTGAATCTAATGCTCACCACTATTCATGGAACCTCTTTCGCAAATTGCTGGGCTCTTCGGACACACCTTGGTTGGTGGGTGGCAATTTTAATGCGGTCCTTCAACATGCGAAGAAATCTGGCGAGCGTATGACTGTGGAAAACGAGTTGGATGCCTTCCGGTTGGCACTGAAGGATTGCTCGCTATCTGATATGGGTTTTTCGGGGGACATATATACGTGGTCTAATCGATAG

Protein sequence

MDIVKQRLGYTSCFIVSSSGRSGGITFSWNSDVVFSLISFSNHHIDGWIEWDGKRWQIIWFYGFSESNAHHYSWNLFRKLLGSSDTPWLVGGNFNAVLQHAKKSGERMTVENELDAFRLALKDCSLSDMGFSGDIYTWSNR
Homology
BLAST of Lag0015775 vs. NCBI nr
Match: KAF5443558.1 (hypothetical protein F2P56_036105, partial [Juglans regia])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-26
Identity = 64/141 (45.39%), Postives = 82/141 (58.16%), Query Frame = 0

Query: 1   MDIVKQRLGYTSCFIVSSSGRSGGITFSWNSDVVFSLISFSNHHIDGWI-EWDGKRWQII 60
           M+  K RL  T CF V   GRSGG++  W  D+   + SFS HHID  I + DG  W+  
Sbjct: 44  MENCKFRLHLTHCFTVDCVGRSGGLSLLWKGDLRVRVQSFSLHHIDALIQDGDGPEWRFT 103

Query: 61  WFYGFSESNAHHYSWNLFRKLLGSSDTPWLVGGNFNAVLQHAKKSGERMTVENELDAFRL 120
             YG  E    + +WNL R+L    D PWLVGG+FN +L   +K G R   EN+++AFR 
Sbjct: 104 GVYGNPEVVNRYLTWNLLRRLNSGVDGPWLVGGDFNELLHFNEKRGGRPRSENQMEAFRN 163

Query: 121 ALKDCSLSDMGFSGDIYTWSN 141
            + DCSL D+GF G  YTW N
Sbjct: 164 VIFDCSLRDLGFRGPKYTWCN 184

BLAST of Lag0015775 vs. NCBI nr
Match: XP_015382608.1 (uncharacterized protein LOC107175577 [Citrus sinensis])

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-25
Identity = 55/141 (39.01%), Postives = 86/141 (60.99%), Query Frame = 0

Query: 1   MDIVKQRLGYTSCFIVSSSGRSGGITFSWNSDVVFSLISFSNHHIDGWIEW-DGKRWQII 60
           M++  ++L + +CF VS SGR GG+   WN +    + SFS HHID  ++  +G++ +  
Sbjct: 3   MNVTGKKLKFDNCFAVSCSGRGGGLALLWNEETCVQIKSFSKHHIDAEVQMANGRQMRCT 62

Query: 61  WFYGFSESNAHHYSWNLFRKLLGSSDTPWLVGGNFNAVLQHAKKSGERMTVENELDAFRL 120
           W YG  E     ++W L R+L+G S +PWL  G+FN +L   +KSG      N +++FR 
Sbjct: 63  WVYGHPEMGQKQHTWTLLRRLVGLSPSPWLCFGDFNEILHPHEKSGGNERNVNSINSFRQ 122

Query: 121 ALKDCSLSDMGFSGDIYTWSN 141
           AL+DC L+D+ + G  +TWSN
Sbjct: 123 ALRDCELADVRYKGYPFTWSN 143

BLAST of Lag0015775 vs. NCBI nr
Match: XP_042980077.1 (uncharacterized protein LOC122310261 [Carya illinoinensis])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 59/141 (41.84%), Postives = 83/141 (58.87%), Query Frame = 0

Query: 1   MDIVKQRLGYTSCFIVSSSGRSGGITFSWNSDVVFSLISFSNHHIDGWIEWDGKR-WQII 60
           MD +K++LG+ +CF V S GRSGG+   WNSD+   L SFS +HID  I+ D    W+  
Sbjct: 44  MDTLKRKLGFVNCFSVDSEGRSGGLGLLWNSDLRVELRSFSKYHIDVHIKMDDLMVWRFT 103

Query: 61  WFYGFSESNAHHYSWNLFRKLLGSSDTPWLVGGNFNAVLQHAKKSGERMTVENELDAFRL 120
             YG  ++    ++WNL R L      PWLVGG+ N VL   +K G R    ++++AFR 
Sbjct: 104 GLYGHPDALRRTFTWNLIRTLSSIEQIPWLVGGDLNEVLHPHEKRGGRDRPVSQIEAFRE 163

Query: 121 ALKDCSLSDMGFSGDIYTWSN 141
            L +C L D+G+ G  +TW N
Sbjct: 164 VLTECELRDLGYKGQRFTWWN 184

BLAST of Lag0015775 vs. NCBI nr
Match: OMO59710.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-24
Identity = 55/140 (39.29%), Postives = 88/140 (62.86%), Query Frame = 0

Query: 1   MDIVKQRLGYTSCFIVSSSGRSGGITFSWNSDVVFSLISFSNHHIDGWIEWDGK--RWQI 60
           +D +++R    +CF VS++GRSGG+   W+  V   LISFS HHID W++ + +  +W++
Sbjct: 473 LDSIRRRCKMHACFGVSATGRSGGLAMFWDDSVDLQLISFSQHHIDMWVDENQRLAKWRL 532

Query: 61  IWFYGFSESNAHHYSWNLFRKLLGSSDTPWLVGGNFNAVLQHAKKSGERMTVENELDAFR 120
             FYG +++   H SW+L R+ +   +  W   G+FN +L  A+K G R   E ++ AFR
Sbjct: 533 TGFYGEADTGRRHLSWDLLRQFVLHDEKNWFCFGDFNELLWQAEKDGGRERPEAQMVAFR 592

Query: 121 LALKDCSLSDMGFSGDIYTW 139
            AL DC L D+G+ G+++TW
Sbjct: 593 EALDDCGLYDIGYRGNMFTW 612

BLAST of Lag0015775 vs. NCBI nr
Match: XP_042950313.1 (uncharacterized protein LOC122282426 [Carya illinoinensis])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 59/141 (41.84%), Postives = 83/141 (58.87%), Query Frame = 0

Query: 1   MDIVKQRLGYTSCFIVSSSGRSGGITFSWNSDVVFSLISFSNHHIDGWIEWDGKR-WQII 60
           MD +K +LG+ +CF V S GRSGG+   WNSD+   L SFS +HID  I+ D    W+  
Sbjct: 44  MDALKCKLGFVNCFSVDSEGRSGGLGLLWNSDLGVELRSFSQYHIDVHIKIDDLMVWRFT 103

Query: 61  WFYGFSESNAHHYSWNLFRKLLGSSDTPWLVGGNFNAVLQHAKKSGERMTVENELDAFRL 120
             YG  +++   ++WNL R L      PWLVGG+ N VL   +K G R    ++++AFR 
Sbjct: 104 GLYGHPDTSRRTFTWNLIRTLSSIEQLPWLVGGDLNEVLHPHEKRGGRDRPVSQIEAFRE 163

Query: 121 ALKDCSLSDMGFSGDIYTWSN 141
            L +C L D+G+ G  +TW N
Sbjct: 164 VLTECELRDLGYKGQRFTWWN 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF5443558.19.2e-2645.39hypothetical protein F2P56_036105, partial [Juglans regia][more]
XP_015382608.16.0e-2539.01uncharacterized protein LOC107175577 [Citrus sinensis][more]
XP_042980077.11.7e-2441.84uncharacterized protein LOC122310261 [Carya illinoinensis][more]
OMO59710.12.3e-2439.29reverse transcriptase [Corchorus capsularis][more]
XP_042950313.13.0e-2441.84uncharacterized protein LOC122282426 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..141
e-value: 1.7E-12
score: 49.6
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 4..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015775.1Lag0015775.1mRNA