Lag0015754 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015754
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ulp1-like peptidase
Location	chr12: 22973332 .. 22974237 (+)
RNA-Seq Expression	Lag0015754
Synteny	Lag0015754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACCAGACGAACCCATCATGCGTCCTGGAAAGCGTGTCCGTCAGATATCTTGGAAACTACGATTTCCATGGACTGACATCAGACTTGATGGTAAACGAAAGAAATTGAAGATGTATGACCCTATGCGTTCCATTCCCGATGAGTTTGAACAATCGTTTAAAAAATGGATGGACGACCCTGCATCCGATGGATCAGAACAAAAGGTCGTGTATTCATACAAGAAAAGTTCTAGTTTATAAATTTGATAAGTTCGTCATATTGGACAAGCGATGAGGTACACTAAAACCATTACATGTTATTTTCATGCTTGCATATAAACACTAAATAGTGGAGGTTGTTTCAAGTAATTGACTGTCTTTTCATGTTTATCCATAAAAAGATGGACACTCGTCCCGACTTATGTCATTGGAGGTTCGTTACCGGTGACATAGTTGTTACAGTACGATGTTTATGTGTTTTTTTTATTATTCAAATTACTGTTTAGGGTTTATAGTTTGTTATTTGTTATAATGATCTCTTTTTTCCCATTTTGTTTTGCTTTGTAGGAGTTCTTAAGGCTAGGGGACGTGTATGAATAACTTGTAGGAGGCAACCCCGAGTCCTTCGACTGGAGTAGGTTCAAGTTCGTCCTCAAATACGTTTGGGGCGAGCACACAAATTATAATGTTCCATGGAGTACAGTAGATGTCGTGTACATGTCTTTCAACCTAGGAAGAGAACACTGGGTTTTGTTATGTGTGGACCTGAAGATAGGTGAAGTGGTCATCACAGATTCACTAGTGGCTTTTACGTCCGATGTTGAGCTGGAAAAGGATATGAAAATAATATGCACCATCCTTCCACGGCTTTTGGAAGAAGGTGTTGTCATGGAGGTGAAATCATCACTACCACGCACTACATGA

mRNA sequence

ATGGGACCAGACGAACCCATCATGCGTCCTGGAAAGCGTGTCCGTCAGATATCTTGGAAACTACGATTTCCATGGACTGACATCAGACTTGATGGTAAACGAAAGAAATTGAAGATGTATGACCCTATGCGTTCCATTCCCGATGAGTTTGAACAATCGTTTAAAAAATGGATGGACGACCCTGCATCCGATGGATCAGAACAAAAGGTCGTGTATTCATACAAGAAAAGAGGCAACCCCGAGTCCTTCGACTGGAGTAGGTTCAAGTTCGTCCTCAAATACGTTTGGGGCGAGCACACAAATTATAATGTTCCATGGAGTACAGTAGATGTCGTGTACATGTCTTTCAACCTAGGAAGAGAACACTGGGTTTTGTTATGTGTGGACCTGAAGATAGGTGAAGTGGTCATCACAGATTCACTAGTGGCTTTTACGTCCGATGTTGAGCTGGAAAAGGATATGAAAATAATATGCACCATCCTTCCACGGCTTTTGGAAGAAGGTGTTGTCATGGAGGTGAAATCATCACTACCACGCACTACATGA

Coding sequence (CDS)

ATGGGACCAGACGAACCCATCATGCGTCCTGGAAAGCGTGTCCGTCAGATATCTTGGAAACTACGATTTCCATGGACTGACATCAGACTTGATGGTAAACGAAAGAAATTGAAGATGTATGACCCTATGCGTTCCATTCCCGATGAGTTTGAACAATCGTTTAAAAAATGGATGGACGACCCTGCATCCGATGGATCAGAACAAAAGGTCGTGTATTCATACAAGAAAAGAGGCAACCCCGAGTCCTTCGACTGGAGTAGGTTCAAGTTCGTCCTCAAATACGTTTGGGGCGAGCACACAAATTATAATGTTCCATGGAGTACAGTAGATGTCGTGTACATGTCTTTCAACCTAGGAAGAGAACACTGGGTTTTGTTATGTGTGGACCTGAAGATAGGTGAAGTGGTCATCACAGATTCACTAGTGGCTTTTACGTCCGATGTTGAGCTGGAAAAGGATATGAAAATAATATGCACCATCCTTCCACGGCTTTTGGAAGAAGGTGTTGTCATGGAGGTGAAATCATCACTACCACGCACTACATGA

Protein sequence

MGPDEPIMRPGKRVRQISWKLRFPWTDIRLDGKRKKLKMYDPMRSIPDEFEQSFKKWMDDPASDGSEQKVVYSYKKRGNPESFDWSRFKFVLKYVWGEHTNYNVPWSTVDVVYMSFNLGREHWVLLCVDLKIGEVVITDSLVAFTSDVELEKDMKIICTILPRLLEEGVVMEVKSSLPRTT

Homology

[Close]

BLAST of Lag0015754 vs. NCBI nr
Match: XP_038882332.1 (uncharacterized protein LOC120073583 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-18
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 77  RGNPESFDWSRFKFVLKYVWGEHTNYNVPWSTVDVVYMSFNLGREHWVLLCVDLKIGEVV 136
           R +  + DWS  K VLKYV G+HT+Y+VPWS VD VYM FNL   HWVL+C D ++ E++
Sbjct: 54  RRDRHTIDWSMEKKVLKYVHGKHTDYDVPWSNVDAVYMPFNLSGMHWVLVCADFQVRELI 113

Query: 137 ITDSLVAFTSDVELEKDMKIICTILPRLLEEGVVME 173
           + DSL+A   + +LE +M+++C   P LL  G VME
Sbjct: 114 MFDSLIALHLNADLECEMRLVCKNFPGLLIVGAVME 149

[Close]

BLAST of Lag0015754 vs. NCBI nr
Match: XP_038885861.1 (sentrin-specific protease [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-16
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 77  RGNPESFDWSRFKFVLKYVWGEHTNYNVPWSTVDVVYMSFNLGREHWVLLCVDLKIGEVV 136
           R +  + DWS+   V+KYV G+HT+Y+VPWS VD +YM FNL R HWVL+CVD ++ E++
Sbjct: 25  RCDRHTIDWSKTTNVVKYVHGKHTDYDVPWSNVDAIYMPFNLSRMHWVLVCVDFQVRELI 84

Query: 137 ITDSLVAFTSDVELEKDMKIICTILPRLLEEGVVME 173
           + DSL+    + +LE +M+ +C     LL    VME
Sbjct: 85  VFDSLIVLHLNADLEHEMRSLCKNFLGLLIASAVME 120

[Close]

BLAST of Lag0015754 vs. NCBI nr
Match: XP_022148137.1 (uncharacterized protein LOC111016890 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-14
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 82  SFDWSRFKFVLKYVWGEHTNYNVPWSTVDVVYMSFNLGREHWVLLCVDLKIGEVVITDSL 141
           ++ W     + +YV G  +++NVPWS  D+VY   N+G  HWV+L +DL  G++ + DSL
Sbjct: 11  NYPWXEENTIWRYVHGRQSDHNVPWSDADIVYTPMNVGGNHWVMLGIDLVQGDITVWDSL 70

Query: 142 VAFTSDVELEKDMKIICTILPRLLEEGVVMEVKSSLP 179
              T   ELEK++K +CTILP LL  G +  V+  LP
Sbjct: 71  QTATPLDELEKELKPMCTILPTLLHHGGIFSVRPDLP 107

[Close]

BLAST of Lag0015754 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-13
Identity = 39/97 (40.21%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 83  FDW-SRFKFVLKYVWGEHTNYNVPWSTVDVVYMSFNLGREHWVLLCVDLKIGEVVITDSL 142
           +DW  R + ++ Y  G HT+Y + W  VD +Y+ FN+  +HWV++C+DL+ GE+V+ DSL
Sbjct: 195 YDWDGRDESIMGYTDGTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDLEEGEIVVWDSL 254

Query: 143 VAFTSDVELEKDMKIICTILPRLLEEGVVMEVKSSLP 179
            + T+D  +E  +K++ TI+P +L +  VM+V+ +LP
Sbjct: 255 NSMTTDHAMEDHLKVMHTIIPVMLFKCDVMKVQPNLP 291

[Close]

BLAST of Lag0015754 vs. NCBI nr
Match: XP_022158807.1 (uncharacterized protein LOC111025273 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-12
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 82  SFDWSRFKFVLKYVWGEHTNYNVPWSTVDVVYMSFNLGREHWVLLCVDLKIGEVVITDSL 141
           ++DW + + + +YV G  ++Y+  WS  D+VY   N+G  HWV++ +DL  G++ + DSL
Sbjct: 91  TYDWRQERTIFRYVLGRQSDYDTLWSEADIVYTRMNIGGNHWVMIGIDLVEGDLTVWDSL 150

Query: 142 VAFTSDVELEKDMKIICTILPRLLEEGVVMEVKSSLP 179
            A T   +LEK +K +CTI+P +L    ++ ++ +LP
Sbjct: 151 QAITPLEDLEKALKPMCTIIPAILHWSGILALRPNLP 187

The following BLAST results are available for this feature:

BLAST of Lag0015754 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882332.1	1.4e-18	50.00	uncharacterized protein LOC120073583 [Benincasa hispida]	[more]
XP_038885861.1	1.0e-16	45.83	sentrin-specific protease [Benincasa hispida]	[more]
XP_022148137.1	1.6e-14	42.27	uncharacterized protein LOC111016890 [Momordica charantia]	[more]
XP_022148308.1	3.9e-13	40.21	uncharacterized protein LOC111016993 [Momordica charantia]	[more]
XP_022158807.1	2.6e-12	36.08	uncharacterized protein LOC111025273 [Momordica charantia]	[more]

BLAST of Lag0015754 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 82..179 e-value: 4.1E-6 score: 28.3
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 107..167 e-value: 7.6E-10 score: 39.0
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 100..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015754.1	Lag0015754.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity