Lag0015750 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015750
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 22877564 .. 22878349 (-)
RNA-Seq ExpressionLag0015750
SyntenyLag0015750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCAAATCACCATGTGTAGTTTCATCTGCCTGCAATTGCGGTGGTGGTACTTGCAACAGCTTACGCTGTGGAAGAGAAATCCAGGCTATAGATAGAAAAGCTGGGAAATCTCTTCGCAAAATCGATTTGGGACCTGTTCCATCACCTATTGAAGTTGATGCTGCAGTTACTCAACTTCAGAGGTATACATAACATTTGATTGTGTATTTTTGGTATCTTTTCGTGATTTTTCGGGTTCCTGTTTTGTTATCTGTGTAAGAGATTGAAGACGAGCAAATTTTGTACGTTTTTGTTGTGTGAACTGTCTGCGGTTACACCTTGTAGATTTATATGTATAGGAAGAATTGCAATCGTCCATTTCTTGTTGTATACATACACATATGGACACATAAAGCTCATCCTTCCTTTTTTCTCTCTCAACTTGTACCCCTCAGCTATTCACAAGCGAGAGGGGAGACTCTATTAGTTACTCCTTTTCATGATGGACGGAGTTAGATATTTTCTTAAGGAGGCAAAAATTTTTTATTCTAACATTTTACTCTTATGAGCTCGATGCTAATAAATTTTAAATGACAAATTAGAGGAAAAACTATAAAATCTTTAATATTATATGTACCTTTTGAATTTTCCTTTTAAAAATTGTCTAGGGCTCGCTCCAAAGCCCAGATTCTGGAGACCTTCAAGAGTTTTCCTTATGAAGCTCACCCAAAACTCTACACTAAGGGGGATAATTGCCTTCCTCCTTCCTTTTTTGCTCTGCCATGCCCCTTCAAATCATAG

mRNA sequence

ATGGCCTTCAAATCACCATGTGTAGTTTCATCTGCCTGCAATTGCGGTGGTGGTACTTGCAACAGCTTACGCTGTGGAAGAGAAATCCAGGCTATAGATAGAAAAGCTGGGAAATCTCTTCGCAAAATCGATTTGGGACCTGTTCCATCACCTATTGAAGTTGATGCTGCAGTTACTCAACTTCAGAGGGCTCGCTCCAAAGCCCAGATTCTGGAGACCTTCAAGAGTTTTCCTTATGAAGCTCACCCAAAACTCTACACTAAGGGGGATAATTGCCTTCCTCCTTCCTTTTTTGCTCTGCCATGCCCCTTCAAATCATAG

Coding sequence (CDS)

ATGGCCTTCAAATCACCATGTGTAGTTTCATCTGCCTGCAATTGCGGTGGTGGTACTTGCAACAGCTTACGCTGTGGAAGAGAAATCCAGGCTATAGATAGAAAAGCTGGGAAATCTCTTCGCAAAATCGATTTGGGACCTGTTCCATCACCTATTGAAGTTGATGCTGCAGTTACTCAACTTCAGAGGGCTCGCTCCAAAGCCCAGATTCTGGAGACCTTCAAGAGTTTTCCTTATGAAGCTCACCCAAAACTCTACACTAAGGGGGATAATTGCCTTCCTCCTTCCTTTTTTGCTCTGCCATGCCCCTTCAAATCATAG

Protein sequence

MAFKSPCVVSSACNCGGGTCNSLRCGREIQAIDRKAGKSLRKIDLGPVPSPIEVDAAVTQLQRARSKAQILETFKSFPYEAHPKLYTKGDNCLPPSFFALPCPFKS
Homology
[Close]
BLAST of Lag0015750 vs. NCBI nr
Match: XP_038875839.1 (uncharacterized protein LOC120068201 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MAFKSPCVVSSACNCGGGTCNSLRCGREIQAIDRKAGKSLRKIDLGPVPSPIEVDAAVTQ 60
          M FKSP VVSS  NC   TCNSL  GREI+AIDRKAG  L KIDLGPVPSP+EVDAAV  
Sbjct: 1  MDFKSPSVVSSTSNCSDDTCNSLLYGREIEAIDRKAGTRLPKIDLGPVPSPVEVDAAVAA 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]
BLAST of Lag0015750 vs. NCBI nr
Match: KAG7013797.1 (hypothetical protein SDJN02_23964 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MAFKSPCVVSSAC-NCGGGTCNSLRCGREIQAIDRKAGKSLRKIDLGPVPSPIEVDAAVT 60
          MAFKS  VVSS C NCG  TC S  CGREIQ++D KAGKSL K DLGPVPS  EVDAAVT
Sbjct: 1  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61 QLQ 63
           LQ
Sbjct: 61 ALQ 63

[Close]
BLAST of Lag0015750 vs. NCBI nr
Match: KAG6575228.1 (hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575233.1 hypothetical protein SDJN03_25872, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MAFKSPCVVSSAC-NCGGGTCNSLRCGREIQAIDRKAGKSLRKIDLGPVPSPIEVDAAVT 60
          MAFKS  VVSS C NCG  TC S  CGREIQ++D KAGKSL K DLGPVPS  EVDAAVT
Sbjct: 1  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61 QLQ 63
           LQ
Sbjct: 61 ALQ 63

[Close]
BLAST of Lag0015750 vs. NCBI nr
Match: XP_022959467.1 (uncharacterized protein LOC111460433 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-13
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 1  MAFKSPCVVSSAC-NCGGGTCNSLRCGREIQAIDRKAGKSLRKIDLGPVPSPIEVDAAVT 60
          MAFKS  VVSS C NCG  TC S  CGREIQ++D KAGKSL K DLGPVPS  EVDAAVT
Sbjct: 1  MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61 QLQ 63
           LQ
Sbjct: 61 ALQ 63

[Close]
BLAST of Lag0015750 vs. NCBI nr
Match: XP_023006653.1 (uncharacterized protein LOC111499314 [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 46/64 (71.88%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MAFKSPCVVSSAC--NCGGGTCNSLRCGREIQAIDRKAGKSLRKIDLGPVPSPIEVDAAV 60
          MAFKSP VVSS+   NCG  TC SL CGREIQ++D KAGKSL K DLGPVPS  EVDAAV
Sbjct: 1  MAFKSPPVVSSSTCDNCGCDTCKSLFCGREIQSLDTKAGKSLHKFDLGPVPSRSEVDAAV 60

Query: 61 TQLQ 63
            LQ
Sbjct: 61 IALQ 64

The following BLAST results are available for this feature:
BLAST of Lag0015750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875839.12.1e-1474.19uncharacterized protein LOC120068201 [Benincasa hispida][more]
KAG7013797.13.0e-1373.02hypothetical protein SDJN02_23964 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6575228.13.0e-1373.02hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022959467.13.0e-1373.02uncharacterized protein LOC111460433 [Cucurbita moschata][more]
XP_023006653.18.8e-1371.88uncharacterized protein LOC111499314 [Cucurbita maxima][more]
BLAST of Lag0015750 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015750.1Lag0015750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane