Lag0015746 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015746
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr12: 22700595 .. 22701113 (-)
RNA-Seq ExpressionLag0015746
SyntenyLag0015746
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTCTATTCATTAAAGAACAAAGAGTACTGAACGTGAATCTCCAAACGACAGTAAATAACCACGACGCAGCTCTAAAGAACATGGAAGTGCAAATAAGACAGATCGCTACAGCAGTAAACGCCCTTCAAAAGGGAAAATTTCCAAGTGATACTGAGCCTAACAAGAAAGAGCAGTGTAAGATGGTGGCTCTGAGAAGTGGCAGAAGACTGGAGAACAATTCAGAGAAGAAGAAGGAAGAAGAAAAGAGAAGGGATGAAGATGAAGGGACTGGGGCACAAAAAGCCTCCTCTGAAAGGTTCCAACATCCTCCCAACTCTATTGATTTGAATTGTGATTTTTCTAACAATTTTGCAGGTGGAAAAAAAGATGAAAGGCAGGATGACAGAAAGAAACTAACTGAGGAAGAAGTGGTTCCATGCAACCACCATGACAGAGGTTCGCATATTAGCCCGCCCAAGCGGAGGGGCGAATGTTCAACCTTTGATTTCAGGGAGTTACCTTTTCCTCAATGA

mRNA sequence

ATGGTGGCTCTATTCATTAAAGAACAAAGAGTACTGAACGTGAATCTCCAAACGACAGTAAATAACCACGACGCAGCTCTAAAGAACATGGAAGTGCAAATAAGACAGATCGCTACAGCAGTAAACGCCCTTCAAAAGGGAAAATTTCCAAGTGATACTGAGCCTAACAAGAAAGAGCAGTGTAAGATGGTGGCTCTGAGAAGTGGCAGAAGACTGGAGAACAATTCAGAGAAGAAGAAGGAAGAAGAAAAGAGAAGGGATGAAGATGAAGGGACTGGGGCACAAAAAGCCTCCTCTGAAAGGTTCCAACATCCTCCCAACTCTATTGATTTGAATTGTGATTTTTCTAACAATTTTGCAGGTGGAAAAAAAGATGAAAGGCAGGATGACAGAAAGAAACTAACTGAGGAAGAAGTGGTTCCATGCAACCACCATGACAGAGGTTCGCATATTAGCCCGCCCAAGCGGAGGGGCGAATGTTCAACCTTTGATTTCAGGGAGTTACCTTTTCCTCAATGA

Coding sequence (CDS)

ATGGTGGCTCTATTCATTAAAGAACAAAGAGTACTGAACGTGAATCTCCAAACGACAGTAAATAACCACGACGCAGCTCTAAAGAACATGGAAGTGCAAATAAGACAGATCGCTACAGCAGTAAACGCCCTTCAAAAGGGAAAATTTCCAAGTGATACTGAGCCTAACAAGAAAGAGCAGTGTAAGATGGTGGCTCTGAGAAGTGGCAGAAGACTGGAGAACAATTCAGAGAAGAAGAAGGAAGAAGAAAAGAGAAGGGATGAAGATGAAGGGACTGGGGCACAAAAAGCCTCCTCTGAAAGGTTCCAACATCCTCCCAACTCTATTGATTTGAATTGTGATTTTTCTAACAATTTTGCAGGTGGAAAAAAAGATGAAAGGCAGGATGACAGAAAGAAACTAACTGAGGAAGAAGTGGTTCCATGCAACCACCATGACAGAGGTTCGCATATTAGCCCGCCCAAGCGGAGGGGCGAATGTTCAACCTTTGATTTCAGGGAGTTACCTTTTCCTCAATGA

Protein sequence

MVALFIKEQRVLNVNLQTTVNNHDAALKNMEVQIRQIATAVNALQKGKFPSDTEPNKKEQCKMVALRSGRRLENNSEKKKEEEKRRDEDEGTGAQKASSERFQHPPNSIDLNCDFSNNFAGGKKDERQDDRKKLTEEEVVPCNHHDRGSHISPPKRRGECSTFDFRELPFPQ
Homology
BLAST of Lag0015746 vs. NCBI nr
Match: XP_022868848.1 (uncharacterized protein LOC111388394 [Olea europaea var. sylvestris])

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-10
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 0

Query: 15  NLQTTVNNHDAALKNMEVQIRQIATAVNALQKGKFPSDTEPNKKEQCKMVALRSGRRLEN 74
           N++T V+N  A +KN+EVQI Q+AT++ + QKGKFPSDTE N +E C  + LRSG+ +E 
Sbjct: 176 NIETHVSNMGATMKNLEVQIGQLATSIKSQQKGKFPSDTEVNPREHCNAITLRSGKMVEE 235

Query: 75  NSEKK---------KEEEKRRDEDEGTGAQKASSERFQHPPNSIDLNCDFSNNFAGGKKD 128
           +  KK           +E+++ E EGT   K  S  F   P  +     FS  F   K D
Sbjct: 236 SKPKKIVVPTSDVIVTDERQKTEPEGTKIYKPYSISFPDNPPILKPPLPFSQRFMKKKFD 295

BLAST of Lag0015746 vs. NCBI nr
Match: XP_041011488.1 (uncharacterized protein LOC121255284 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 15  NLQTTVNNHDAALKNMEVQIRQIATAVNALQKGKFPSDTEPNKKEQCKMVALRSGRRLEN 74
           N++T  +N  AA+KN+EVQIRQ+AT +NA Q+G FPS+TE N KEQCK + LRSG+ +E 
Sbjct: 247 NIETHCSNMGAAIKNIEVQIRQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGKEIER 306

Query: 75  NSEKK 80
              K+
Sbjct: 307 PPSKE 311

BLAST of Lag0015746 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 3   ALFIKEQRVLNVNLQTTVNNHDAALKNMEVQIRQIATAVNALQKGKFPSDTEPNKKEQCK 62
           A F K    L+ N++T  +N  A +KN+EVQI Q+AT +NA Q+G FPS+TE N KEQCK
Sbjct: 351 ATFKKSDSQLD-NIETHCSNMGATMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCK 410

Query: 63  MVALRSGRRLENNSEKKKE 82
            + LRSGR +E +  K+ E
Sbjct: 411 AITLRSGREIERSPSKETE 428

BLAST of Lag0015746 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 15  NLQTTVNNHDAALKNMEVQIRQIATAVNALQKGKFPSDTEPNKKEQCKMVALRSGRRLEN 74
           N++T  +N  A +KN+EVQI Q+AT +NA Q+G FPS+TE N KEQCK + LRSGR +E 
Sbjct: 362 NIETHCSNMGATMKNLEVQIGQLATTINAQQRGTFPSNTEVNPKEQCKAITLRSGREIET 421

Query: 75  NSEKKKE 82
           +  K+ E
Sbjct: 422 SPSKETE 428

BLAST of Lag0015746 vs. NCBI nr
Match: XP_023913136.1 (uncharacterized protein LOC112024733 [Quercus suber])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 15  NLQTTVNNHDAALKNMEVQIRQIATAVNALQKGKFPSDTEPNKKEQCKMVALRSGRRLEN 74
           N++T  +N +A +KN+EVQI Q+AT +NA Q+G FPS+TE N KEQCK + LRSGR +E 
Sbjct: 234 NIETHCSNIEAIMKNLEVQIGQLATTINAQQRGTFPSNTEVNLKEQCKAITLRSGREIER 293

Query: 75  NSEKKKE 82
           +  K+ E
Sbjct: 294 SPSKETE 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022868848.18.6e-1039.34uncharacterized protein LOC111388394 [Olea europaea var. sylvestris][more]
XP_041011488.11.1e-0955.38uncharacterized protein LOC121255284 [Juglans microcarpa x Juglans regia][more]
XP_023874613.11.9e-0950.63uncharacterized protein LOC111987139 [Quercus suber][more]
XP_023903214.12.5e-0953.73uncharacterized protein LOC112015077 [Quercus suber][more]
XP_023913136.12.5e-0953.73uncharacterized protein LOC112024733 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015746.1Lag0015746.1mRNA