Lag0015729 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015729
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr12: 21806786 .. 21807088 (+)
RNA-Seq ExpressionLag0015729
SyntenyLag0015729
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAAATAGTTAGTTTAACATCTACTGCTGATATATGGTCTTCTCTTAATCTTTCTTATGACTCTAATACTACTGCTCGTATAATGGGGCTGAAAACTCAAATTCAAAAGATAAAGAAAGATGGTTTGCCCGTTAGTAAGTATCTAGCGAAAATTAAGGAAATAGCTGATAAATTTGCAGCCATTGAGGAATCTATCTCTTATAGGGATCATTTGGCTCACATCCTTGATGGTTTAGGGATAGAGTACAATGCTTTCATTACAACAATCCAAAACAGGTCAGATGATGGGTTAATATGA

mRNA sequence

ATGAGTGAAATAGTTAGTTTAACATCTACTGCTGATATATGGTCTTCTCTTAATCTTTCTTATGACTCTAATACTACTGCTCGTATAATGGGGCTGAAAACTCAAATTCAAAAGATAAAGAAAGATGGTTTGCCCGTTAGTAAGTATCTAGCGAAAATTAAGGAAATAGCTGATAAATTTGCAGCCATTGAGGAATCTATCTCTTATAGGGATCATTTGGCTCACATCCTTGATGGTTTAGGGATAGAGTACAATGCTTTCATTACAACAATCCAAAACAGGTCAGATGATGGGTTAATATGA

Coding sequence (CDS)

ATGAGTGAAATAGTTAGTTTAACATCTACTGCTGATATATGGTCTTCTCTTAATCTTTCTTATGACTCTAATACTACTGCTCGTATAATGGGGCTGAAAACTCAAATTCAAAAGATAAAGAAAGATGGTTTGCCCGTTAGTAAGTATCTAGCGAAAATTAAGGAAATAGCTGATAAATTTGCAGCCATTGAGGAATCTATCTCTTATAGGGATCATTTGGCTCACATCCTTGATGGTTTAGGGATAGAGTACAATGCTTTCATTACAACAATCCAAAACAGGTCAGATGATGGGTTAATATGA

Protein sequence

MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSDDGLI
Homology
BLAST of Lag0015729 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 0

Query: 1   MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKF 60
           M E+VSL +T DIWSSL   YDS TTARIMGLKT++Q ++KDG  VS+YLAKIKEIADKF
Sbjct: 104 MGEVVSLETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKF 163

Query: 61  AAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD 97
           AA+ E +SYRDHLAH+LDGLG EYNAF+T+I NR+D
Sbjct: 164 AAVGEPLSYRDHLAHVLDGLGSEYNAFVTSIHNRAD 199

BLAST of Lag0015729 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 1  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKF 60
          M EIV   S  DIW +L   Y+S++ A IMG  +Q+QKIKKDGL VS+YLA+IK++ D F
Sbjct: 1  MGEIVGYESAFDIWEALRTVYESSSIAPIMGFCSQLQKIKKDGLTVSQYLAQIKDVLDNF 60

Query: 61 AAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD 97
          AAI E +SYRDHL++IL+GLG EYN F+++I NR++
Sbjct: 61 AAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNRTN 96

BLAST of Lag0015729 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-17
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 30 MGLKTQIQKIKKDGLPVSKYLAKIKEIADKFAAIEESISYRDHLAHILDGLGIEYNAFIT 89
          M LK ++QKI+KD L +S+YL++IK++ADKF+ + ESISYRDHL HILDGLG EYNAF+T
Sbjct: 1  MSLKARLQKIRKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVT 60

Query: 90 TIQNRSDD 98
          +IQN  D+
Sbjct: 61 SIQNHVDN 68

BLAST of Lag0015729 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 46/96 (47.92%), Postives = 70/96 (72.92%), Query Frame = 0

Query: 1   MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKF 60
           + +IV  ++  DIW+SLN  Y+S + A +M L +Q+Q+IKK  +P+S+YL+++K + D+F
Sbjct: 114 VGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEF 173

Query: 61  AAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD 97
           A I E +SYRD L  IL+GL  EY+ F+T+I NRSD
Sbjct: 174 ATIGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSD 209

BLAST of Lag0015729 vs. NCBI nr
Match: RVW15416.1 (hypothetical protein CK203_082664 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 44/96 (45.83%), Postives = 71/96 (73.96%), Query Frame = 0

Query: 1  MSEIVSLTSTADIWSSLNLSYDSNTTARIMGLKTQIQKIKKDGLPVSKYLAKIKEIADKF 60
          +  I+   +T +IW +LN  Y S + A ++GL +Q+Q+IKK+G+ +S+YLA+IKE+ DK+
Sbjct: 2  VGRIIEYKTTREIWGALNKVYQSPSIATMLGLNSQLQRIKKEGITISEYLARIKEVFDKY 61

Query: 61 AAIEESISYRDHLAHILDGLGIEYNAFITTIQNRSD 97
          +A+ E +SYRD L + L+GL  EY+ F+T+I NRS+
Sbjct: 62 SAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNRSN 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.12.6e-3071.88uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_038887133.11.7e-2157.29uncharacterized protein LOC120077323 [Benincasa hispida][more]
XP_038891713.14.2e-1764.71uncharacterized protein LOC120081111 [Benincasa hispida][more]
RVW69807.12.1e-1647.92Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVW15416.12.1e-1645.83hypothetical protein CK203_082664 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..97
e-value: 1.6E-14
score: 53.9
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015729.1Lag0015729.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding