Lag0015714 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015714
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionserine/arginine repetitive matrix protein 1
Locationchr12: 21429951 .. 21430460 (+)
RNA-Seq ExpressionLag0015714
SyntenyLag0015714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTTCCGAATACCCAATTTCGTGCTAGCCACAAATTCCAAACCATGTGGACTGCCTCCCCAAACCCACCGAACCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGCCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGCAGGAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGGCCCGAGAAGTGAAAGAGAAGCAGAAGGAAGGGCCTTCCACCGAAGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCATTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA

mRNA sequence

ATGAACCTTCCGAATACCCAATTTCGTGCTAGCCACAAATTCCAAACCATGTGGACTGCCTCCCCAAACCCACCGAACCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGCCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGCAGGAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGGCCCGAGAAGTGAAAGAGAAGCAGAAGGAAGGGCCTTCCACCGAAGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCATTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA

Coding sequence (CDS)

ATGAACCTTCCGAATACCCAATTTCGTGCTAGCCACAAATTCCAAACCATGTGGACTGCCTCCCCAAACCCACCGAACCCGTTCAGCCGCCGCCTCCCGATCCCAACCAGGCCGGTCTCCGCCATCTACGCCAAGTCTCAGCCACCCAAAAGCGACGCCGACAACACCACACCAAGCGACAGCAGGAGCAGCATCAAAAGCTTTGGCCACAAAATTCTGTCAGCCGTGAACTCCCCAAACCCCAATCGGAAACAAACGACCCCAAAACAGGAATCGCAAATTAGTGGGTCCGATGTTCTGAGGGCACTGCAGAAGGCCGCTGCTGTGAAGGAGAAGAACAGGGCCCGAGAAGTGAAAGAGAAGCAGAAGGAAGGGCCTTCCACCGAAGGGATCGACTCTCAGAACTCTGACATGAACCGTAGAGTGAGGCCATTGAGAATCAACAGCGATTGGGGCTTGAGGCTCACCGAGTTGGAAAAACGCCTTCAGGACATTTCTGACATGGTTTGA

Protein sequence

MNLPNTQFRASHKFQTMWTASPNPPNPFSRRLPIPTRPVSAIYAKSQPPKSDADNTTPSDSRSSIKSFGHKILSAVNSPNPNRKQTTPKQESQISGSDVLRALQKAAAVKEKNRAREVKEKQKEGPSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV
Homology
BLAST of Lag0015714 vs. NCBI nr
Match: XP_038906928.1 (uncharacterized protein LOC120092795 [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 9.0e-44
Identity = 112/168 (66.67%), Postives = 128/168 (76.19%), Query Frame = 0

Query: 17  MWTASPNPPNPFSRRLPI-----PTRPVSAIYAKSQPPKSDADNTTPSDSRSSIKSFGHK 76
           MW AS   P P   RLPI     PT PVSAIYA+SQPPK+DA NTTP+DS SSIKSFGHK
Sbjct: 1   MWAASSTLPTPSCHRLPIITRPLPTPPVSAIYAESQPPKTDAGNTTPNDS-SSIKSFGHK 60

Query: 77  ILSAVNSPNPNR-----KQTTPKQE-----SQISGSDVLRALQKAAAVKEKNRAREVKEK 136
           ILSAVNSPNP        +TTPKQE     +QISGSD+LRALQKAAAVKEKNR R+VK K
Sbjct: 61  ILSAVNSPNPKSLNPKPNKTTPKQEAQPEAAQISGSDILRALQKAAAVKEKNRTRQVKGK 120

Query: 137 QKEGPSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           +KEGP+TEG    +S+MN RVRPL+I  DWGLRL++LEKRLQ+ S+ V
Sbjct: 121 KKEGPTTEG---SHSEMNHRVRPLKIKGDWGLRLSQLEKRLQEFSEPV 164

BLAST of Lag0015714 vs. NCBI nr
Match: XP_022959476.1 (uncharacterized protein LOC111460438 [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-43
Identity = 110/164 (67.07%), Postives = 127/164 (77.44%), Query Frame = 0

Query: 17  MWTASPNPPNPFSRRLPIPTR-----PVSAIYAKSQPPKSDADNTTPSDSRSSIKSFGHK 76
           MWTA    P+P   RLP+PTR     PVSAIYAK+QPP++DADN TP++S +SIKSFGHK
Sbjct: 1   MWTAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNS-TSIKSFGHK 60

Query: 77  ILSAVNSPNPNRKQTTPKQES-----QISGSDVLRALQKAAAVKEKNRAREVKEKQKEG- 136
           ILSA NS NP  +    KQES     QISG DVLRALQKAAAVKEKNR R+ KE++K+G 
Sbjct: 61  ILSAANSTNPKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163

BLAST of Lag0015714 vs. NCBI nr
Match: XP_023006674.1 (uncharacterized protein LOC111499329 [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 4.5e-43
Identity = 110/164 (67.07%), Postives = 125/164 (76.22%), Query Frame = 0

Query: 17  MWTASPNPPNPFSRRLPIPTR-----PVSAIYAKSQPPKSDADNTTPSDSRSSIKSFGHK 76
           MW A    P+P   RLP+PTR     PVSAIYAK+QPP +DADN TP++S SSIKSFGHK
Sbjct: 1   MWAAFSTSPSPSCCRLPLPTRPLPTPPVSAIYAKAQPPDTDADNATPNNS-SSIKSFGHK 60

Query: 77  ILSAVNSPNPNRKQTTPKQESQ-----ISGSDVLRALQKAAAVKEKNRAREVKEKQKEG- 136
           ILSA  S NP  +    KQESQ     ISG DVLRALQKAAAVKEKNR R+VKE++K+G 
Sbjct: 61  ILSAAKSTNPKSRSPIRKQESQLETAKISGLDVLRALQKAAAVKEKNRTRQVKEQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLTELEKRLQEISETV 163

BLAST of Lag0015714 vs. NCBI nr
Match: XP_023547620.1 (uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 107/164 (65.24%), Postives = 126/164 (76.83%), Query Frame = 0

Query: 17  MWTASPNPPNPFSRRLPIPTR-----PVSAIYAKSQPPKSDADNTTPSDSRSSIKSFGHK 76
           MW A    P+P   RLP+PTR     PVSAIYAK+QPP++DADN TP++S SSIKSFGHK
Sbjct: 1   MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNS-SSIKSFGHK 60

Query: 77  ILSAVNSPN-----PNRKQTTPKQESQISGSDVLRALQKAAAVKEKNRAREVKEKQKEG- 136
           ILSA NS N     P RKQ +  + +QISG DVLRALQKAAAVKEKNR R+ +E++K+G 
Sbjct: 61  ILSAANSTNSKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120

Query: 137 PSTEGIDSQNSDMNRRVRPLRINSDWGLRLTELEKRLQDISDMV 170
           P TEG  S NS+MNRRVRPLRI +DWGLRL ELEKRLQ+IS+ V
Sbjct: 121 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV 163

BLAST of Lag0015714 vs. NCBI nr
Match: KAG6575245.1 (hypothetical protein SDJN03_25884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-38
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 0

Query: 32  LPIPTRPVSAIYAKSQPPKSDADNTTPSDSRSSIKSFGHKILSAVNSPNPNRKQTTPKQE 91
           +P PT PVSAIYAK+QPP++DADN TP++S +SIKSFGHKILSA NS NP  +    KQE
Sbjct: 5   VPPPTPPVSAIYAKAQPPETDADNATPNNS-TSIKSFGHKILSAANSTNPKSRSPIRKQE 64

Query: 92  S-----QISGSDVLRALQKAAAVKEKNRAREVKEKQKEG-PSTEGIDSQNSDMNRRVRPL 151
           S     QISG DVLRALQKAAAVKEKNR R+ KE++K+G P TEG  S NS++ RRVRPL
Sbjct: 65  SQLETAQISGLDVLRALQKAAAVKEKNRTRQGKEQKKDGPPPTEGSGSDNSEVIRRVRPL 124

Query: 152 RINSDWGLRLTELEKRLQDISDMV 170
           RI +DWGLRLTELEKRLQ+IS+ V
Sbjct: 125 RIKNDWGLRLTELEKRLQEISETV 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906928.19.0e-4466.67uncharacterized protein LOC120092795 [Benincasa hispida][more]
XP_022959476.12.0e-4367.07uncharacterized protein LOC111460438 [Cucurbita moschata][more]
XP_023006674.14.5e-4367.07uncharacterized protein LOC111499329 [Cucurbita maxima][more]
XP_023547620.11.4e-4165.24uncharacterized protein LOC111806506 [Cucurbita pepo subsp. pepo][more]
KAG6575245.12.5e-3868.75hypothetical protein SDJN03_25884, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..99
NoneNo IPR availablePANTHERPTHR37728BNAA04G26730D PROTEINcoord: 17..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015714.1Lag0015714.1mRNA