Lag0015693 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015693
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr12: 20382902 .. 20387613 (+)
RNA-Seq ExpressionLag0015693
SyntenyLag0015693
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATGCTGCCAAATTTCCATCTCAAACTCATTAACTCAAAACTCTCTTAAGCTTGTGTTTCAAGCTCTTTCCCTCTCAAATTTCATCACTAGAGGATCCCACAACCCGTTCCAAAGGCCTGAGAATAGCAAGGAAGATCAAGTAGTGGTTCGTGACAAGTTGGTGAGGAAAAACAACCAAATTCACTTCTTTCTAGCAAATCCCCAATTAGGGTAAATAATTGCAAATTTAGCCATTTTTTAAAATATTTACAAATATGGCAAAATTTTTTAATTAATTTTTTATATCCCTATTTTGCCCTTAATTGCACGCGCACATCTGGTGGATTTCTCTCCTCTCTTTTTGTTTTGGTAGGTTTCTATCAGATAGAAAATTTTTCTATCACGGATAGATTCTATCAGTGATAGGAAAACTTTCTATCTGATAGAAAATTTTTCAACTTTCTATCTGATAGAAAATTTTTCTATCACTGATAGATTCTATCACCTATCAGTGATAGAAGATTTCTATCACTGATAGAATTAACTTTCTATCAGTGATAGAAATTTTCTATCATTGATAGAATCTATCAGAGATAGAAAAACGTTCTATCAACTTTCTATCACTGATAGAAATCTTCTATTATTGATATAATTAACTTTCTATCAGTGATAGAAGTTTTGTATCACTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACGTTCTATCATCTTCTATCACTGATGGAAAGTTTTTCTATCACTGATAGAAATCTTCTATCAGTGATAGAAAAACTTTCTATCAGTGATAGAAAGTTTTTCTATCACTGATAGAAGATTTCTATCAGTGATAGAAAAACGTTCTATCAGTGATACAAATCTTCTATCACTGATAGAACATTCCATCAATGATAGAAGATTTCTATCAGTGATAGAAAACTTTCTATCACTGATAGAAATCTTCTATCATTGATAGAATTAACTTTTTATCACTGATAGAAGATTTCTATCACTGATAGAACGTTTTTCAAGCTCTCTCTCTTTCTTCTCTCAATTCTGTTTCACCCTCTCTCTCTTTCTCTCCATTTCTCACACTCCAACCAAATTCACTTCTTTCTAGCAAATCCCCAATGGCTTCCTTGCTCGCTTCAGCTTCAGCAGCCTCGACAGTGGCCAAACCCCCCTACAGTACTCTGCCTCGCGGCAGCGTCAACCACAGTGGCCAAACCTAAAGCTCTCATTGCGCGCTATCTTTTCGGCTCCCCGACAAGTCCAAACTCTGAATCTTCATCAGGGTATGCACCAATTCATCTCCTTTAGCGATAGAAAGCGACAAATACAAAACAAAAACCAAACAACAACCATAGAAAAACACCAGTAAATCGAAAACAACAACATTTATAGAAACTTTCTATCACTGATAGAAAGTCTTTCTATCACTGATAGATTCTACCAGTGGTAGAAAAATTTTCTATCAGTGATAGAATAAAGTTTCTATCATGATAGAAACTTTATTCTATCAGTGATAGAAACTTTCTATCACTGATAGAATAAAGTTTCTATCACTGATATGAACTTTTTCTATCACGGATAGAATCTATAAGTGATGGAAAAACTGATTGGCGTGCACATCTTCTTATTCCTCGTCAATTATATATATATATATATATATATATATTGATAGAAATCTTCTATGATAGAAAGTCTTTCTATCACTGATAGATTCTATCAGTGGTAGAAAAATTTTCTACAGTGATAGAAAGTTTCTATCACTGATAGAAAATATCAGTGATAGAAACTTCTATCACTGATAGATTGTTTTTCTATCACTGATAGAATCTATCAGTAATAGAAAAATTTTCTATCAGTGATAGAAAGTTTTCTATCAATGATTGACATTTTAGTAATTTTACTTTTCAGATGGTGAGATTTTGCCTTTTTTGCAAATATTTCTGCGGGCTGCTACTTTTGCAACCGGCCCCAACTATAATTGGTTTTCCAAACTAATTAAATTCACTTTCAATGACTTAAAATTGCTTGTCTGATGACCATTTATCATGTTATTCAAAGTTGGAGGTCTATAATTCAATTCTTATAGATTCTATCACTGATAGGAAAACTTTCTATCAGTGATAGAAAGTTTTCTATGATAGAAAATTTTTAGTGATATAAAGTCTTTCTATCACTGATAGAAAGTGATAGAAAGTTTTCTCTATCACTGATAGAAGCTTTCTATCACATATAGAAAAACTTTCTATCAGATAGAAATAGGATATAACGACCAAACACTGATAGAAATAGGATAGAAGGATAGAATCTATCTCTATTAGTGATAGAAAGACTTTCTATCACTGATAGAAAGAGATTCTATCTGATAGAAATACTTTATATCATTGATAGAAAACTTCTATTAGTGATAGAAAGTCTTTCTATCATAATAGAAAGTGATAGAATATTTTTTCTATAAATGATAGAAGTTTTCTATCAGTGATAGAAAGACTTTTTATTTGTGATAGAAAGTTTTTTCTATCTCACAGATAGATTCTATCAGTGAAGAAAGTCTTTTTATCATTGATAGATGTTTTATATCACAAGATAGAAAAACTGATAGAATTTTATCGGATAGAATTTTATCGGATAGAATTTTATCGGATAGAATTTTGTTACTCTAGTGATAGAATCTATCTATTAGTGAAAAAGTTCTATCAGGGATAGAATTCTATCAGATAGAATTCTGTCACTAATAGATTCTATCAATGATAGAAAATATGAGAAACGAAACAACACCAACCAAACACCTACCAAACACCTCATAAAAAAAAACACATTGATAGAAAGCCTTTCTATCAGTGATAGAAAGCTTCTATCAGTGATAGAAAGAAAGAATTTCTATCACTAATAGAGATAGATTCTATTAGATAGAAAGACTTTCTATCACTGATAGATTCTATCAGTGATAGAAAAATTTCTATTAGATAGAAAGGGCATTTTAGTAAATACACATTCCAGAACTTAAAATTTTGCCATTTTTGCAAATTTTTCTACCGGCTGCTAAATCTGTATATATTTTGGGCCGGTTTGCTATATTTGCAACCGGCCCTAAATATAAAGTTTTTTTTTTTGAAAAAATTGATAAATATAAAGTTTGATCTAATAAAATAGAATCACAATTAAATAAAGACGTATGCAGGAAATAAAAAATATATGTATTTAAAATTAATTATGTCAATAAGAAAAATGATTCAAAATTTTGGAGTTCTTAGTAAAGTATCTTTGTTTAGTAAGGAGAAGAAAAGAAAAGAAAAATATCTCAAAGACATATACCTGTGCACATTGGATTAAGATTTCCTTAATTAAAATATGTAATCTGGCCTCCAAGTCTACCATATTACTAGACAAAACATTTCTTTCACATGGCATAAAACAAGGTGAGATGATGCTCACTAATTTCAGCAAAACCTTCCAAAGTTGTCATGACAAACATCTCTTTGTTAGATTTTTGGCAAAATATTAGAAGTGAGTTTGTCCCACATCAAAAAAATTCAAAGAAGTGATGGGCTCCAAGAGGAGCCTATGACTTTGGTTTCAAAGCATCTCATTTAGAATCACTTTAAGCTTGGTAGGTATACTAACTCTAGTTGTGTGGGTGGTATAAAACTTTGAGAGAGTGTTTCTGGTAATTGGAGTCGGGGAGAGAAATCTTTGTGATTGTAAAAAAAAAATTCACATAGTGGATTTCTTTCTGTGGACCGTGGTTTTTTCTCTACTTCGGAGTTTCCACGTAAATTCTTGTGTTGAGGTAGAATTTGGAGTTTTTGATCCCAACAAGTGGTATCAGAGCTTTAGGTTTGTAGTTTCTTGATTTTTTAGTATGCTCTATGGTTGCAGCATTGTCTGACCTTCCATATCAGAAAAGATTTCTAGAAATAAGCTTAGGTGTTGTGAATAGTGTGAGTTGTTCATTATTTGCAGATTAGCTAGGAGTGAAGTAGATATGTCAAGCTTCACGAGTTCAATGAAGATTGACATGGAGAAATTTGATGGAATGATGAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGGCTTTGAAGGAAAGACCAAACGATGGTGCTTATGAAAGATTATGCACTGATGGTGGTCCAAGTAGAATCTAGTGTGGTTCAAGCAGAGGTTTGAAGAAGTCCATTATGAGTGATAAAGATTGGGAGGAAATGGATTTGAGAGTTGTAACTGCAATCATGCTAAATTTGGCTAAGAACATTCTTGCAAATGTGCATGAAATTTCGACAACCAAAGAGCTTTGCGAGAAGCTTGAAGTAATGTATTAGGCAAGGAGCATCTCGAATCGGTTGTACCTGAAGGAGCAATTTTACACGCTTCGAATGAAGGAAGGTACAAAATCTCAGATCATTTGAGTGTTCTCTATAGCATCATTTCAGAGTTGGAGGTGATCGATGTTAAGATAGAGGATGAGGATAAGGCACTCAGGCTTATCTTGTCACTTACAACTTCCTATGAACACATGAACCCAATCTTGATGTACGGAAAGAAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATCAGAGGAAAGAAGGTTGAAGAGTGAAGGACATTCTTCACAAGGGGATTCAGCACCAGGAGCTAGCAATTGGAAGAAGAAGAAAGATTCTGTGTAG

mRNA sequence

ATGTTATGCTGCCAAATTTCCATCTCAAACTCATTAACTCAAAACTCTCTTAAGCTTGTGTTTCAAGCTCTTTCCCTCTCAAATTTCATCACTAGAGGATCCCACAACCCGTTCCAAAGGCCTGAGAATAGCAAGGAAGATCAAGTAGTGGTTCGTGACAAGTTGCTTCAGCAGCCTCGACAGTGGCCAAACCCCCCTACAGTACTCTGCCTCGCGGCAGCGTCAACCACAGTGGCCAAACCTAAAGCTCTCATTGCGCGCTATCTTTTCGGCTCCCCGACAAGTCCAAACTCTGAATCTTCATCAGGATTAGCTAGGAGTGAAGTAGATATGTCAAGCTTCACGAGTTCAATGAAGATTGACATGGAGAAATTTGATGGAATGATGAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGGCTTTGAAGGAAAGACCAAACGATGGTGCTTATGAAAGATTATGCACTGATGGTGGTCCAAGCAAGGAGCATCTCGAATCGGTTGTACCTGAAGGAGCAATTTTACACGCTTCGAATGAAGGAAGGTACAAAATCTCAGATCATTTGAGTGTTCTCTATAGCATCATTTCAGAGTTGGAGGTGATCGATGTTAAGATAGAGGATGAGGATAAGGCACTCAGGCTTATCTTGTCACTTACAACTTCCTATGAACACATGAACCCAATCTTGATGTACGGAAAGAAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATCAGAGGAAAGAAGGTTGAAGAGTGAAGGACATTCTTCACAAGGGGATTCAGCACCAGGAGCTAGCAATTGGAAGAAGAAGAAAGATTCTGTGTAG

Coding sequence (CDS)

ATGTTATGCTGCCAAATTTCCATCTCAAACTCATTAACTCAAAACTCTCTTAAGCTTGTGTTTCAAGCTCTTTCCCTCTCAAATTTCATCACTAGAGGATCCCACAACCCGTTCCAAAGGCCTGAGAATAGCAAGGAAGATCAAGTAGTGGTTCGTGACAAGTTGCTTCAGCAGCCTCGACAGTGGCCAAACCCCCCTACAGTACTCTGCCTCGCGGCAGCGTCAACCACAGTGGCCAAACCTAAAGCTCTCATTGCGCGCTATCTTTTCGGCTCCCCGACAAGTCCAAACTCTGAATCTTCATCAGGATTAGCTAGGAGTGAAGTAGATATGTCAAGCTTCACGAGTTCAATGAAGATTGACATGGAGAAATTTGATGGAATGATGAACTTCGACTTGTGGCAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGGCTTTGAAGGAAAGACCAAACGATGGTGCTTATGAAAGATTATGCACTGATGGTGGTCCAAGCAAGGAGCATCTCGAATCGGTTGTACCTGAAGGAGCAATTTTACACGCTTCGAATGAAGGAAGGTACAAAATCTCAGATCATTTGAGTGTTCTCTATAGCATCATTTCAGAGTTGGAGGTGATCGATGTTAAGATAGAGGATGAGGATAAGGCACTCAGGCTTATCTTGTCACTTACAACTTCCTATGAACACATGAACCCAATCTTGATGTACGGAAAGAAAACTTTAAGTTTTGCTGATGTTACTAGTAAATTGTTATCAGAGGAAAGAAGGTTGAAGAGTGAAGGACATTCTTCACAAGGGGATTCAGCACCAGGAGCTAGCAATTGGAAGAAGAAGAAAGATTCTGTGTAG

Protein sequence

MLCCQISISNSLTQNSLKLVFQALSLSNFITRGSHNPFQRPENSKEDQVVVRDKLLQQPRQWPNPPTVLCLAAASTTVAKPKALIARYLFGSPTSPNSESSSGLARSEVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEHLESVVPEGAILHASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSAPGASNWKKKKDSV
Homology
BLAST of Lag0015693 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-47
Identity = 127/242 (52.48%), Postives = 142/242 (58.68%), Query Frame = 0

Query: 108 EVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDG 167
           E DMS F S +KID+EKFDGM+NF LWQVQVKDVLIQS LHKALK RP++GA E+L  DG
Sbjct: 292 EADMSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDG 351

Query: 168 GPSK----------------------------------------------------EHLE 227
           GP +                                                    E LE
Sbjct: 352 GPMESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLE 411

Query: 228 SVVPEGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLI 287
           ++     I +             E   KISDHLS L SII ELE I+VKI+DEDKALRLI
Sbjct: 412 ALYQAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLI 471

BLAST of Lag0015693 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-34
Identity = 104/214 (48.60%), Postives = 125/214 (58.41%), Query Frame = 0

Query: 116 SSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP--------------NDGAYE 175
           S M+ D+EK+DG +NF LWQVQVKDVLIQS LHKAL+ +P              +D  +E
Sbjct: 5   SPMRFDVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSGTSKDDDEEWE 64

Query: 176 ----------RLC------------TDGGPSKEHLESV-----VPEGAILHAS-----NE 235
                     RLC            +      E LE +     +P    L         +
Sbjct: 65  DLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGIPNRLYLKEQFHTLRMD 124

Query: 236 GRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFA 284
           G  KISDHLSVL +I+SELE I VK+EDEDKALRLILSLT+SYEHM PILMYGK+TL +A
Sbjct: 125 GDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYA 184

BLAST of Lag0015693 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 153.3 bits (386), Expect = 3.2e-33
Identity = 102/214 (47.66%), Postives = 123/214 (57.48%), Query Frame = 0

Query: 116 SSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP--------------NDGAYE 175
           S M+  +EK+DG +NF LWQVQVKDVLIQS LHKAL+ +P              +D  +E
Sbjct: 5   SPMRFVVEKYDGRINFGLWQVQVKDVLIQSGLHKALRGKPTPVSSKDSSGTSKDDDEEWE 64

Query: 176 ----------RLC------------TDGGPSKEHLESVVPEGAILH----------ASNE 235
                     RLC            +      E LE +     I +             +
Sbjct: 65  DLDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGISNRLYLKEQFHTLRMD 124

Query: 236 GRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFA 284
           G  KISDHLSVL +I+SELE I VK+EDEDKALRLILSLT+SYEHM PILMYGK+TL +A
Sbjct: 125 GDTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYA 184

BLAST of Lag0015693 vs. NCBI nr
Match: QHN81458.1 (Retrovirus-related Pol polyprotein [Arachis hypogaea])

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-32
Identity = 95/198 (47.98%), Postives = 123/198 (62.12%), Query Frame = 0

Query: 111 MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKER---PNDGAYE------ 170
           MS ++S++K+++EKFDG +NF LWQ+QVKDVLIQS LHKALKER     D  +E      
Sbjct: 1   MSGYSSAVKLEIEKFDGRINFGLWQIQVKDVLIQSGLHKALKERISGMKDEEWEELDLRA 60

Query: 171 ----RLCTDGGPSKEHLESV--VPEGAILHASNEGRY----------------------- 230
               RLC     +K  L +V  +     L    EG Y                       
Sbjct: 61  ASAIRLCL----AKNVLANVQGIKTAKELWDKLEGLYQSKGISNRLLLKEQFHNLRMDHN 120

Query: 231 -KISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADV 270
            KISDHLS +  I+SELE I VKI+DEDKALRLILSL +SYE++ P+LMYGK+TL+F +V
Sbjct: 121 VKISDHLSAINGIVSELEAIGVKIDDEDKALRLILSLPSSYEYIKPVLMYGKETLNFEEV 180

BLAST of Lag0015693 vs. NCBI nr
Match: QHO24915.1 (Retrovirus-related Pol polyprotein [Arachis hypogaea])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-31
Identity = 93/208 (44.71%), Postives = 131/208 (62.98%), Query Frame = 0

Query: 111 MSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKER---PNDGAYE------ 170
           MS ++S +K+++EKFDG +NF LWQ+QVKDVLI+S LHKALKE+     D  +E      
Sbjct: 1   MSGYSSVVKLEIEKFDGRINFGLWQIQVKDVLIKSGLHKALKEKISGMKDEEWEELDLRA 60

Query: 171 ----RLCTDGG---------PSKE---HLESVVPEGAIL----------HASNEGRYKIS 230
               RLC              +KE    LE +    +I           + S +   KIS
Sbjct: 61  ASAIRLCLAKNVLANVQGMKTAKELWGKLEGLYQAKSISNRLLLKEQFHNLSMDHNVKIS 120

Query: 231 DHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKL 284
           DHLS +  I+SELE I VKI+DEDKALRLILSL +SYE++ P+LMYGK+TL+F +V SKL
Sbjct: 121 DHLSAINGIVSELEAIGVKIDDEDKALRLILSLPSSYEYVKPVLMYGKETLNFEEVASKL 180

BLAST of Lag0015693 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-07
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 184 LHASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILMYGK 243
           LH S EG   +S HL+V   +I++L  + VKIE+EDKA+ L+ SL +SY+++   +++GK
Sbjct: 110 LHMS-EGTNFLS-HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK 169

Query: 244 KTLSFADVTSKLLSEERRLKSEGHSSQ 271
            T+   DVTS LL  E+  K   +  Q
Sbjct: 170 TTIELKDVTSALLLNEKMRKKPENQGQ 194

BLAST of Lag0015693 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.4e-48
Identity = 127/242 (52.48%), Postives = 142/242 (58.68%), Query Frame = 0

Query: 108 EVDMSSFTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDG 167
           E DMS F S +KID+EKFDGM+NF LWQVQVKDVLIQS LHKALK RP++GA E+L  DG
Sbjct: 292 EADMSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDG 351

Query: 168 GPSK----------------------------------------------------EHLE 227
           GP +                                                    E LE
Sbjct: 352 GPMESSGGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLE 411

Query: 228 SVVPEGAILH----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLI 287
           ++     I +             E   KISDHLS L SII ELE I+VKI+DEDKALRLI
Sbjct: 412 ALYQAKGISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLI 471

BLAST of Lag0015693 vs. ExPASy TrEMBL
Match: A0A6A3B141 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110332pilonHSYRG00834 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-29
Identity = 92/197 (46.70%), Postives = 119/197 (60.41%), Query Frame = 0

Query: 117 SMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERP---NDGAYERLCTD--GGPSK 176
           S + D+EKFDG +NF LWQVQVKD+LIQS L+KALK +P   ++G      +D  G   K
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGK 61

Query: 177 EHLESVVPEGAILHASNEGRY---------------------KISDHLSVLYSIISELEV 236
             +     E   + A+++ R                      KISDHLS L  I+SELE 
Sbjct: 62  SKMSEEEWEELDMRAASQIRLCLAKNVLANEKFHKLQMEEGTKISDHLSALNGIVSELES 121

Query: 237 IDVKIEDEDKALRLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKS-EGHSS 287
           I VKI+DEDKALRLI SL +SYEHM  +LMY K+ ++F++VTSKL+SEERRLK+ E  SS
Sbjct: 122 IGVKIDDEDKALRLIWSLPSSYEHMQTVLMYEKENVNFSEVTSKLISEERRLKNGENKSS 181

BLAST of Lag0015693 vs. ExPASy TrEMBL
Match: V4T6T3 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-29
Identity = 86/172 (50.00%), Postives = 107/172 (62.21%), Query Frame = 0

Query: 114 FTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEH 173
           F+S +K ++EKFDG +NF LWQVQVKDVLIQS LHKALK +P+  +            E 
Sbjct: 6   FSSPVKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKGKPSPASNSGSGKTTKELWEK 65

Query: 174 LESVVPEGAILH-----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKAL 233
           LE +    +I +              EG  KI DHLSVL  I+ ELE I VKIED DKAL
Sbjct: 66  LEKLYRTKSISNRLYLKERFHTLRMTEGT-KIFDHLSVLNGIVLELEAIGVKIEDGDKAL 125

Query: 234 RLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSA 275
           RL+ SL TSY+H+ P LMYGK+T++  +VT+ LLSEERRL  E   +   SA
Sbjct: 126 RLLWSLPTSYKHLLPTLMYGKETVNLEEVTNTLLSEERRLSGESTETTDVSA 176

BLAST of Lag0015693 vs. ExPASy TrEMBL
Match: A0A2H5QXN2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.1e-29
Identity = 86/172 (50.00%), Postives = 107/172 (62.21%), Query Frame = 0

Query: 114 FTSSMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALKERPNDGAYERLCTDGGPSKEH 173
           F+S +K ++EKFDG +NF LWQVQVKDVLIQS LHKALK +P+  +            E 
Sbjct: 6   FSSPVKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKGKPSPASNSGSGKTTKELWEK 65

Query: 174 LESVVPEGAILH-----------ASNEGRYKISDHLSVLYSIISELEVIDVKIEDEDKAL 233
           LE +    +I +              EG  KI DHLSVL  I+ ELE I VKIED DKAL
Sbjct: 66  LEKLYRTKSISNRLYLKERFHTLRMTEGT-KIFDHLSVLNGIVLELEAIGVKIEDGDKAL 125

Query: 234 RLILSLTTSYEHMNPILMYGKKTLSFADVTSKLLSEERRLKSEGHSSQGDSA 275
           RL+ SL TSY+H+ P LMYGK+T++  +VT+ LLSEERRL  E   +   SA
Sbjct: 126 RLLWSLPTSYKHLLPTLMYGKETVNLEEVTNTLLSEERRLSGESTETTDVSA 176

BLAST of Lag0015693 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.3e-27
Identity = 95/227 (41.85%), Postives = 121/227 (53.30%), Query Frame = 0

Query: 117 SMKIDMEKFDGMMNFDLWQVQVKDVLIQSRLHKALK------------ERPNDGAYE--- 176
           S + D+EKFDG +NF LWQVQVKD+LIQS L+KALK            ++P+D + +   
Sbjct: 2   SFRFDIEKFDGRINFGLWQVQVKDILIQSGLYKALKGKPASLSEGKEPDKPSDSSGDKGK 61

Query: 177 -------------------RLC---------TDGGPSKEHLESVVPEGAILHASN----- 236
                              RLC              +KE  E +         SN     
Sbjct: 62  SKMSEEEWEELDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLK 121

Query: 237 --------EGRYKISDHLSVLYSIISELEVIDVKIEDEDKALRLILSLTTSYEHMNPILM 287
                   E   KISDHLS L  I+SELE I V+I+DEDKALRLI SL +SYEHM  +LM
Sbjct: 122 EKFHKLQMEEGTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQTVLM 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139673.11.7e-4752.48uncharacterized protein LOC111010521 [Momordica charantia][more]
KAF5765959.11.7e-3448.60putative RNA-directed DNA polymerase [Helianthus annuus][more]
KAF5758504.13.2e-3347.66putative RNA-directed DNA polymerase [Helianthus annuus][more]
QHN81458.11.6e-3247.98Retrovirus-related Pol polyprotein [Arachis hypogaea][more]
QHO24915.11.3e-3144.71Retrovirus-related Pol polyprotein [Arachis hypogaea][more]
Match NameE-valueIdentityDescription
P109781.1e-0741.38Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A6J1CG828.4e-4852.48uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6A3B1411.8e-2946.70CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0... [more]
V4T6T35.1e-2950.00Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 ... [more]
A0A2H5QXN25.1e-2950.00Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1[more]
A0A6A3BK596.3e-2741.85CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 193..264
e-value: 8.2E-13
score: 48.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..287
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 113..155
NoneNo IPR availablePANTHERPTHR34676:SF6SUBFAMILY NOT NAMEDcoord: 194..273
NoneNo IPR availablePANTHERPTHR34676:SF6SUBFAMILY NOT NAMEDcoord: 113..155
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 194..273

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015693.1Lag0015693.1mRNA