Lag0015680 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015680
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 19916714 .. 19917190 (+)
RNA-Seq ExpressionLag0015680
SyntenyLag0015680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATAGACGAGCCAACGATCGACCAGTTGGTAAAGGCCCTATCTTCAGTGGGCCATGTGGGAGTCAAGTGGCAGAAGTCCAGGACAGGGATATGGACTCTTTTATCTGGAGATTTGAAGCCAGGAGCAACAATCTGGCTTTACGTAATTAAGAATCGAATAATGCCAACAATGCATGTCACGATCATCTCTCAAGAGCGGGTCATGCTGTTATACGACATGTATAAAGGCCTGAATCTCAACCCTAGTCGAATCATCTGGACCGAGATCCTAGCCTGTGGGCACAAAAACGAGGGAAGGGTATTCTTCCCAAGTCTGATCACGAAGTTATGTAGGCTTGTAGGTGTCGAGCTCGAGGAGAAAGTGGGCCATGTGGGAGTCAAGTGGCAGAAGTCCAGGACAGGGATCTGGACTCTCTTATCTGGAGATTTGAAGCCAGAAGCAACAATATGGCTTTACGTAATTAAGAATTGA

mRNA sequence

ATGGCCATAGACGAGCCAACGATCGACCAGTTGGTAAAGGCCCTATCTTCAGTGGGCCATGTGGGAGTCAAGTGGCAGAAGTCCAGGACAGGGATATGGACTCTTTTATCTGGAGATTTGAAGCCAGGAGCAACAATCTGGCTTTACGTAATTAAGAATCGAATAATGCCAACAATGCATGTCACGATCATCTCTCAAGAGCGGGTCATGCTGTTATACGACATGTATAAAGGCCTGAATCTCAACCCTAGTCGAATCATCTGGACCGAGATCCTAGCCTGTGGGCACAAAAACGAGGGAAGGGTATTCTTCCCAAGTCTGATCACGAAGTTATGTAGGCTTGTAGGTGTCGAGCTCGAGGAGAAAGTGGGCCATGTGGGAGTCAAGTGGCAGAAGTCCAGGACAGGGATCTGGACTCTCTTATCTGGAGATTTGAAGCCAGAAGCAACAATATGGCTTTACGTAATTAAGAATTGA

Coding sequence (CDS)

ATGGCCATAGACGAGCCAACGATCGACCAGTTGGTAAAGGCCCTATCTTCAGTGGGCCATGTGGGAGTCAAGTGGCAGAAGTCCAGGACAGGGATATGGACTCTTTTATCTGGAGATTTGAAGCCAGGAGCAACAATCTGGCTTTACGTAATTAAGAATCGAATAATGCCAACAATGCATGTCACGATCATCTCTCAAGAGCGGGTCATGCTGTTATACGACATGTATAAAGGCCTGAATCTCAACCCTAGTCGAATCATCTGGACCGAGATCCTAGCCTGTGGGCACAAAAACGAGGGAAGGGTATTCTTCCCAAGTCTGATCACGAAGTTATGTAGGCTTGTAGGTGTCGAGCTCGAGGAGAAAGTGGGCCATGTGGGAGTCAAGTGGCAGAAGTCCAGGACAGGGATCTGGACTCTCTTATCTGGAGATTTGAAGCCAGAAGCAACAATATGGCTTTACGTAATTAAGAATTGA

Protein sequence

MAIDEPTIDQLVKALSSVGHVGVKWQKSRTGIWTLLSGDLKPGATIWLYVIKNRIMPTMHVTIISQERVMLLYDMYKGLNLNPSRIIWTEILACGHKNEGRVFFPSLITKLCRLVGVELEEKVGHVGVKWQKSRTGIWTLLSGDLKPEATIWLYVIKN
Homology
BLAST of Lag0015680 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-19
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 3   IDEPTIDQLVKALSSVGHVGVKWQKSRTGIWTLLSGDLKPGATIWLYVIKNRIMPTMHVT 62
           +++ T  +L   L +V   G +W  S  G++T L   L P A IW + +K+R++PT H  
Sbjct: 50  VEDITEPELAMVLETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGK 109

Query: 63  IISQERVMLLYDMYKGLNLNPSRIIWTEILACGHKNEGRVFFPSLITKLCR 114
           I+S+ERV+LLY M  G ++N  R+I  EI AC  +  G +FFPSLI ++CR
Sbjct: 110 IVSKERVLLLYSMLTGKSINMGRMIHREICACAARKSGALFFPSLIIRMCR 160

BLAST of Lag0015680 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-18
Identity = 48/126 (38.10%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 3   IDEPTIDQLVKALSSVGHVGVKWQKSRTGIWTLLSGDLKPGATIWLYVIKNRIMPTMHVT 62
           I+  T  +L+  L +V   G +W  S  G +T +   L P A +W + +K+R++PT H  
Sbjct: 63  IENITEPELITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGK 122

Query: 63  IISQERVMLLYDMYKGLNLNPSRIIWTEILACGHKNEGRVFFPSLITKLCRLVGVEL-EE 122
           I+S++R++LL+ M  G ++N  R+I +EI AC  +  G +FFPSLIT+LCR     + EE
Sbjct: 123 IVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEE 182

Query: 123 KVGHVG 128
           K+ + G
Sbjct: 183 KLHNTG 188

BLAST of Lag0015680 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 101.3 bits (251), Expect = 7.9e-18
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 3   IDEPTIDQLVKALSSVGHVGVKWQKSRTGIWTLLSGDLKPGATIWLYVIKNRIMPTMHVT 62
           +++ T  +LV  L +V  VG +W  S  G +T L   L P A +W + +K+R++PT H  
Sbjct: 154 VEDITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGK 213

Query: 63  IISQERVMLLYDMYKGLNLNPSRIIWTEILACGHKNEGRVFFPSLITKLCR 114
            +S+E V LLY M  G ++N  R+I  EI AC  +  G +FFPSLIT +CR
Sbjct: 214 TVSKEHVSLLYSMLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCR 264

BLAST of Lag0015680 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-17
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 0

Query: 3   IDEPTIDQLVKALSSVGHVGVKWQKSRTGIWTLLSGDLKPGATIWLYVIKNRIMPTMHVT 62
           +++ T  +L   L +V   GV+W  S  G +  L   L P A +W + +K+ ++PT H  
Sbjct: 81  VEDITEPELAMVLETVAIAGVEWNVSFQGAYIYLRSSLNPHAKVWYHFLKSHLLPTTHGK 140

Query: 63  IISQERVMLLYDMYKGLNLNPSRIIWTEILACGHKNEGRVFFPSLITKLCRLVGVE--LE 122
           I+S+ERV+LLY M  G ++N  R+I  EI AC  +    +FFPSLIT++CR        E
Sbjct: 141 IVSKERVLLLYSMLTGKSINVGRMIHREICACAARKSRALFFPSLITRMCRNARAPYLYE 200

Query: 123 EKVGHVG 128
           EK+ + G
Sbjct: 201 EKLHNTG 207

BLAST of Lag0015680 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-17
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 0

Query: 3   IDEPTIDQLVKALSSVGHVGVKWQKSRTGIWTLLSGDLKPGATIWLYVIKNRIMPTMHVT 62
           I   T   L+  L +V   G +W  S  G +T +   L P A +W + +K+R++PT H  
Sbjct: 133 IQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGK 192

Query: 63  IISQERVMLLYDMYKGLNLNPSRIIWTEILACGHKNEGRVFFPSLITKLCRLVGVEL--- 122
            +S++R++LL+ M  G ++N  R+I +EI AC  +  G +FFPSLIT+LCR         
Sbjct: 193 TVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVN 252

Query: 123 EEKVGHVG 128
           EEK+ + G
Sbjct: 253 EEKLHNTG 260

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON50458.19.3e-1941.44hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
PON78020.12.7e-1838.10hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
PON70375.17.9e-1841.44hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
PON44141.12.3e-1737.80hypothetical protein PanWU01x14_268850 [Parasponia andersonii][more]
PON46472.13.9e-1736.72hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015680.1Lag0015680.1mRNA