Lag0015669 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015669
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 19449901 .. 19450576 (+)
RNA-Seq ExpressionLag0015669
SyntenyLag0015669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAAATAAGGCAAAAGCCTCCTCTTCAAAGGGCAAAAGCCCAGCTTCCTCTTCTTCAGCACCTCCACCTATGAGTGTTGATCAATATGCTATGGATTTAGGGTTTACTCCTGTAACCCGATCTAGAGCAAGAACGGACGGCATACGTCCAATGTCTCCAATGGAGTCATCCACTCCACCAAGGCCTTCGGTCAACCTAGTCCGTCCTTCTGGCGGTGTTGTTCAATTGAGACCTCCAGTCTCACTAGATTCTAGGATAGGGTCATCACCCCCGTCACCTTCTTCCTATTCTCAGGTTGTTACTCCAGAAAAGAGGTTTGTACCTCGACCTGAGATCAAATCACATTTTCAAAAATCTCTGGATATCACTAAACCCATCATTGAACCAGAATTTCAAGGTCTCAACCTTGAAGAGACCATTTCAAATATGTATCCATCAGGCTTTAACTTTATGCTTGAAGACCTTCAAAAAACAAGAACCTTTTATGAGTTTATATAATTGGAACTCTTTGGGACTCTGAACCTTCAAGTGCACTCGATCACGGGGGATAGTGGAGGCGTACGTTCTAGGCAATAACCACTGCTTGACAAAGTTGAGCCAAGTGTTAGCCTCACACTTCAGGTATGCTGACTGGAATGTTCTTGCCCTCATCCTAGACAACCTCCACTAG

mRNA sequence

ATGAGTGGAAATAAGGCAAAAGCCTCCTCTTCAAAGGGCAAAAGCCCAGCTTCCTCTTCTTCAGCACCTCCACCTATGAGTGTTGATCAATATGCTATGGATTTAGGGTTTACTCCTGTAACCCGATCTAGAGCAAGAACGGACGGCATACGTCCAATGTCTCCAATGGAGTCATCCACTCCACCAAGGCCTTCGGTCAACCTAGTCCGTCCTTCTGGCGGTGTTGTTCAATTGAGACCTCCAGTCTCACTAGATTCTAGGATAGGGTCATCACCCCCGTCACCTTCTTCCTATTCTCAGGTTGTTACTCCAGAAAAGAGGTTTGTACCTCGACCTGAGATCAAATCACATTTTCAAAAATCTCTGGATATCACTAAACCCATCATTGAACCAGAATTTCAAGTGGAGGCGTACGTTCTAGGCAATAACCACTGCTTGACAAAGTTGAGCCAAGTGTTAGCCTCACACTTCAGGTATGCTGACTGGAATGTTCTTGCCCTCATCCTAGACAACCTCCACTAG

Coding sequence (CDS)

ATGAGTGGAAATAAGGCAAAAGCCTCCTCTTCAAAGGGCAAAAGCCCAGCTTCCTCTTCTTCAGCACCTCCACCTATGAGTGTTGATCAATATGCTATGGATTTAGGGTTTACTCCTGTAACCCGATCTAGAGCAAGAACGGACGGCATACGTCCAATGTCTCCAATGGAGTCATCCACTCCACCAAGGCCTTCGGTCAACCTAGTCCGTCCTTCTGGCGGTGTTGTTCAATTGAGACCTCCAGTCTCACTAGATTCTAGGATAGGGTCATCACCCCCGTCACCTTCTTCCTATTCTCAGGTTGTTACTCCAGAAAAGAGGTTTGTACCTCGACCTGAGATCAAATCACATTTTCAAAAATCTCTGGATATCACTAAACCCATCATTGAACCAGAATTTCAAGTGGAGGCGTACGTTCTAGGCAATAACCACTGCTTGACAAAGTTGAGCCAAGTGTTAGCCTCACACTTCAGGTATGCTGACTGGAATGTTCTTGCCCTCATCCTAGACAACCTCCACTAG

Protein sequence

MSGNKAKASSSKGKSPASSSSAPPPMSVDQYAMDLGFTPVTRSRARTDGIRPMSPMESSTPPRPSVNLVRPSGGVVQLRPPVSLDSRIGSSPPSPSSYSQVVTPEKRFVPRPEIKSHFQKSLDITKPIIEPEFQVEAYVLGNNHCLTKLSQVLASHFRYADWNVLALILDNLH
Homology
BLAST of Lag0015669 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 148.3 bits (373), Expect = 6.2e-32
Identity = 85/131 (64.89%), Postives = 100/131 (76.34%), Query Frame = 0

Query: 5   KAKASSSKGKSPASSS-SAPPPMSVDQYAMDLGFTPVTRSRARTDGIRPMSPMESSTPPR 64
           +  ++SSKG  P+SSS S P PMS  QY MDLGFT VTRSR+R   I   SP ESSTPPR
Sbjct: 11  RTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPR 70

Query: 65  PSVNLVRPSGGVVQLRPPVSLDSRIGSSPPSPSSYSQVVTPEKRFVPRPEIKSHFQKSLD 124
           PSVNL+RPSGGV+Q+RPP S  S   SS P P++YSQ VT +KRFVPRPEIKS+FQKS+ 
Sbjct: 71  PSVNLIRPSGGVIQMRPPASPSSNRESSTP-PTTYSQAVTLDKRFVPRPEIKSYFQKSIV 130

Query: 125 ITKPIIEPEFQ 135
           +  PIIEPE+Q
Sbjct: 131 VYDPIIEPEYQ 140

BLAST of Lag0015669 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-31
Identity = 83/131 (63.36%), Postives = 101/131 (77.10%), Query Frame = 0

Query: 5   KAKASSSKG-KSPASSSSAPPPMSVDQYAMDLGFTPVTRSRARTDGIRPMSPMESSTPPR 64
           +  ++SSKG + P+SS+SAP P+S DQYAMDLGFT VTR  +R+ GI   SP ESSTPPR
Sbjct: 11  RTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPR 70

Query: 65  PSVNLVRPSGGVVQLRPPVSLDSRIGSSPPSPSSYSQVVTPEKRFVPRPEIKSHFQKSLD 124
           PS NL+RPS GVVQ+RPP S  S   SS P P++YSQ VTP+KRFVPRPEIKS+FQK + 
Sbjct: 71  PSTNLIRPSSGVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKRFVPRPEIKSYFQKPIV 130

Query: 125 ITKPIIEPEFQ 135
           +  PIIE E+Q
Sbjct: 131 VYDPIIELEYQ 140

BLAST of Lag0015669 vs. NCBI nr
Match: KAA0066384.1 (hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK00900.1 hypothetical protein E5676_scaffold602G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 7.5e-30
Identity = 81/134 (60.45%), Postives = 100/134 (74.63%), Query Frame = 0

Query: 5   KAKASSSKGKSPASSS-SAPPPMSVDQYAMDLGFTPVTRSRARTDGIRPMSPMESSTPPR 64
           +  ++SSKG   +SSS SAP P   DQYAM++GFT VTRSR+R+  IR  S  ES+TPPR
Sbjct: 11  RTNSTSSKGNHASSSSNSAPSPTGADQYAMEVGFTTVTRSRSRSSNIRIGSLTESTTPPR 70

Query: 65  PSVNLVRPSGGVVQLRPPVSLDSRIGSSPPSPSSYSQVVTPEKRFVPRPEIKSHFQKSLD 124
           PSVNL+ PS GVVQ+RPP S  S   SS PS ++YSQ VTP+KRFVPRPEIKS+FQK + 
Sbjct: 71  PSVNLIHPSSGVVQMRPPASPSSNRESSTPS-TTYSQAVTPDKRFVPRPEIKSYFQKLIV 130

Query: 125 ITKPIIEPEFQVEA 138
           +  PIIE E+Q+ A
Sbjct: 131 VYDPIIELEYQINA 143

BLAST of Lag0015669 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 7.5e-30
Identity = 80/126 (63.49%), Postives = 95/126 (75.40%), Query Frame = 0

Query: 5   KAKASSSKGKSPASSS-SAPPPMSVDQYAMDLGFTPVTRSRARTDGIRPMSPMESSTPPR 64
           +  ++SSKG  P+SSS SAP PMS DQY MDLGFT V RSR+R+  IR  SP ESSTPPR
Sbjct: 11  RTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTPPR 70

Query: 65  PSVNLVRPSGGVVQLRPPVSLDSRIGSSPPSPSSYSQVVTPEKRFVPRPEIKSHFQKSLD 124
           P  NL+RPSG VVQ+RPP S  S   SS P P++YSQ VTP+KRFVPRP+IKS+FQK + 
Sbjct: 71  PLANLIRPSGRVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKRFVPRPKIKSYFQKPIV 130

Query: 125 ITKPII 130
           +  PII
Sbjct: 131 VYDPII 135

BLAST of Lag0015669 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-29
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 0

Query: 5   KAKASSSKGKSPASSS-SAPPPMSVDQYAMDLGFTPVTRSRARTDGIRPMSPMESSTPPR 64
           +  ++SSKG  P+SSS SA  PM+ DQYAMDL FT VTRSR+R+  IR  SP ESSTPPR
Sbjct: 11  RTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESSTPPR 70

Query: 65  PSVNLVRPSGGVVQLRPPVSLDSRIGSSPPSPSSYSQVVTPEKRFVPRPEIKSHFQKSLD 124
           P  NL+RPSGGVVQ+RPP S  S   SS P P++YSQ VTP+KRFVPRP+IKS+FQK + 
Sbjct: 71  PLANLIRPSGGVVQMRPPTSPSSNRESSTP-PTTYSQAVTPDKRFVPRPKIKSYFQKPIV 130

Query: 125 ITKPII 130
           +  PII
Sbjct: 131 VYDPII 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34145.16.2e-3264.89hypothetical protein [Cucumis melo subsp. melo][more]
KAA0043136.13.1e-3163.36putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative... [more]
KAA0066384.17.5e-3060.45hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK0090... [more]
TYK11076.17.5e-3063.49hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa][more]
KAA0056175.11.7e-2963.49hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015669.1Lag0015669.1mRNA