Lag0015661 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015661
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 19092423 .. 19092854 (-)
RNA-Seq ExpressionLag0015661
SyntenyLag0015661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACTACCCATGACAACACTATTTATGTGGAGAGTGTCATGATTCTCTACAGTATGATGAATGGTTTGGAGCTAAACTTCGGTAGCATAATCCGTTTGGAGATTCTCTCTGGTGGGAGAAAGAAAGCAGGGAAATTATTCTTTGGGTCGTTGATCACCCAACTGTGTCGGAGAGCTAAGAGCGCTCCAGGAATTAAGGCATCTACTTCGCAACTTACTCCTTCACCAGCGCCGACACCTGCTTCACCGCCGCCATCCACTCTTATTACAGGGCCTACTCCATCGTCAGAGGTTCTTAGGTTTGCTCTTAAGCAGTTGGGTGGAATTAAGGATCGATTGAAGACATATTGGGTCTATGCCAAAGAGCGAGATGAAGCCATTAGAGAATTTAACCTCTATTGCCCCAAGCATCACCCTCGTATTTCCTGA

mRNA sequence

ATGTCGACTACCCATGACAACACTATTTATGTGGAGAGTGTCATGATTCTCTACAGTATGATGAATGGTTTGGAGCTAAACTTCGGTAGCATAATCCGTTTGGAGATTCTCTCTGGTGGGAGAAAGAAAGCAGGGAAATTATTCTTTGGGTCGTTGATCACCCAACTGTGTCGGAGAGCTAAGAGCGCTCCAGGAATTAAGGCATCTACTTCGCAACTTACTCCTTCACCAGCGCCGACACCTGCTTCACCGCCGCCATCCACTCTTATTACAGGGCCTACTCCATCGTCAGAGGTTCTTAGGTTTGCTCTTAAGCAGTTGGGTGGAATTAAGGATCGATTGAAGACATATTGGGTCTATGCCAAAGAGCGAGATGAAGCCATTAGAGAATTTAACCTCTATTGCCCCAAGCATCACCCTCGTATTTCCTGA

Coding sequence (CDS)

ATGTCGACTACCCATGACAACACTATTTATGTGGAGAGTGTCATGATTCTCTACAGTATGATGAATGGTTTGGAGCTAAACTTCGGTAGCATAATCCGTTTGGAGATTCTCTCTGGTGGGAGAAAGAAAGCAGGGAAATTATTCTTTGGGTCGTTGATCACCCAACTGTGTCGGAGAGCTAAGAGCGCTCCAGGAATTAAGGCATCTACTTCGCAACTTACTCCTTCACCAGCGCCGACACCTGCTTCACCGCCGCCATCCACTCTTATTACAGGGCCTACTCCATCGTCAGAGGTTCTTAGGTTTGCTCTTAAGCAGTTGGGTGGAATTAAGGATCGATTGAAGACATATTGGGTCTATGCCAAAGAGCGAGATGAAGCCATTAGAGAATTTAACCTCTATTGCCCCAAGCATCACCCTCGTATTTCCTGA

Protein sequence

MSTTHDNTIYVESVMILYSMMNGLELNFGSIIRLEILSGGRKKAGKLFFGSLITQLCRRAKSAPGIKASTSQLTPSPAPTPASPPPSTLITGPTPSSEVLRFALKQLGGIKDRLKTYWVYAKERDEAIREFNLYCPKHHPRIS
Homology
BLAST of Lag0015661 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-06
Identity = 46/149 (30.87%), Postives = 72/149 (48.32%), Query Frame = 0

Query: 1   MSTTHDNTIYVESVMILYSMMNGLELNFGSIIRLEILSGGRKKAGKLFFGSLITQLCRRA 60
           + TTH   +  + +++L+SM+NG  +N G +I  EI +   +K G LFF SLIT+LCR A
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  ---------KSAPGIKASTSQLTPSPAPTPASPPPSTLITGPTPSSEVLRFALKQLGGIK 120
                     +   I A          PT ++  PS+       SS      L+QL  ++
Sbjct: 176 PFLVNEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALE 235

Query: 121 DRL----------KTYWVYAKERDEAIRE 131
            RL          + +W Y+KERD A+++
Sbjct: 236 QRLSQQEHTHKQQQQFWAYSKERDTALKK 264

BLAST of Lag0015661 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 0

Query: 1    MSTTHDNTIYVESVMILYSMMNGLELNFGSIIRLEILSGGRKKAGKLFFGSLITQLCRRA 60
            + T+HD+T+  E + +LY ++ G ++N G +I  EI     +  GKLFF  LIT+ CR A
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   K------SAPGIKASTSQLTPSPAPTPASPPPSTLITGPTPSSEVL--RFALKQLGGIKD 120
                     P  +       P  AP   +P  +T  T   P  E L    AL+Q   + +
Sbjct: 946  NVPMLNDEDPVPRKGVVSFEPDRAPKRTTPSTTTASTSRDPMDERLSKHEALQQ--QMCE 1005

Query: 121  RLKTYWVYAKERD 126
            RL+T+W Y +ERD
Sbjct: 1006 RLQTHWNYERERD 1016

BLAST of Lag0015661 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 0

Query: 1   MSTTHDNTIYVESVMILYSMMNGLELNFGSIIRLEILSGGRKKAGKLFFGSLITQLCRRA 60
           + TTH  T+  + +++LYSM+ G  +N G +I  EI +   +K+G LFF SLITQLCR A
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KSAPGIKASTSQLT-----------PSPAPTPASPPPSTLITGPTPSSEVLRFALKQLGG 120
           ++   +      +T                T  +  PST       SS      L+QL  
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 IKDRL---------------------KTYWVYAKERDEAIRE 131
           ++ RL                     + +W Y+KERD A+++
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKK 218

BLAST of Lag0015661 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0

Query: 1   MSTTHDNTIYVESVMILYSMMNGLELNFGSIIRLEILSGGRKKAGKLFFGSLITQLCRRA 60
           + TTH  T+  E V++LYSM+ G  +N G II  EI +   +K+G LFF SLIT++C  A
Sbjct: 93  LPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGALFFPSLITRMCCNA 152

Query: 61  KS 63
           ++
Sbjct: 153 RA 154

BLAST of Lag0015661 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 1  MSTTHDNTIYVESVMILYSMMNGLELNFGSIIRLEILSGGRKKAGKLFFGSLITQLCRRA 60
          + TTH   +  E V++LYSM+ G  +N G II  EI +   +K G LFF SLIT++CR A
Sbjct: 24 LPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNA 83

Query: 61 KS 63
          ++
Sbjct: 84 RA 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON78020.14.8e-0630.87hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
KAF4375842.11.8e-0533.83hypothetical protein G4B88_026421 [Cannabis sativa][more]
PON59596.13.1e-0529.01hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON62892.11.2e-0445.16hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
PON65869.11.5e-0445.16hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015661.1Lag0015661.1mRNA