Lag0015652 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015652
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr12: 18671390 .. 18677625 (+)
RNA-Seq ExpressionLag0015652
SyntenyLag0015652
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAATGCATTTACAGATGCTAAGAAAGTGACCAAGTCACATATACCAGCTGCAAATACACCATCGAAAATTGATATCCCAACGCAACAAGTTATCATAACTAATGAGTCTGCGACACGCCAGAAGCGTGGTAGACCAATGGGTTCCAAAGATAAAAATCCTCGAAAAAGAAAAGTAGTCAATAATCAAAACGACGTAATTGATAATGTGGATATTCCAGAAGAAATCCTGAATGTGACTACTCATAATAATATCGAAGAAGGTCAAATACCTGAGGATAATAATGAAATTTCGGTAAATTATGTAATGAATGAAAAAAGATGAAACCGAAACAATATAGTTGATAACTTTTTTGCTTATAATGTTGCTTACGACATCATTTCTAAAAATGATGATTATGAACAAAAATTTTTCGAAGAATGTAGACATAGAAAGGATTGGCTTAAGTGGAAAGAAGCAATCCATACAGAATTAAACTCACTCTCAAAATGTGAGGTTTTCGAACCAGTAGTGCAGACACTAGAAGATGCCAAGCCTGTGGGATACAAATGGGTATTTATAAGAAAAAGAAATGAAAAGAATGAGGTCACAAGATATAAAGCGAGACTTTTTGCACATGGATTCTCGCAAAGGGCTGGTATTGATTATGAGGAGACATATTCTCCTTTGGTGGATGCAATAACATTGAGATATTTAACTGACCTGACTGTAAAAAGCTTGACATGCATCTCATGGATGTAGTTACAACATATTTATATGGATCTCTTAATAATGATGTTTATATGAAAATCTCTTAAGGATTAAAAATACCAGAGTCATATAATTCAAATCCTAGAAAATTATATTCGATCAAATTATAGAGTTCTTTATATGGATTAAAACAATAAGGACAAATGTGGTATAATTGCCCGAGTGAATATTTATTGAAAAAAGGGTATCAAAATATCCCAATTTGTCCATGTGTTTTTATAAAGAAATCACAGTCAGGATTTGTTATCATTACTGTATATGTTGATGATTTAAATATAATGGGATCTCTTGAAGAGCTTCCAAAGGCAATAGAATATCTTAAGAAAGAATTTGAGATGAAAGATCTCGGGAAAACAAAGTTTTGCCTTGGCTTACAAATTGAGCATCTAGTAGATGGAATATTTATTCATCAATCAACTTATACATAAAAGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTAACATTTGACTTGCTTCCATGAAGTATTGTTTTTATATATTTGTTTTGCCTAAATATAACCATAAATCCAATAAACTAAGAACCCGTGATTATATTAGGTATACTTGAAGTTTATGTGTAACATAAGTATAGATCAAGTTCAAGTAAATAGTCTAAATGATCTATAGTATATGGATAAGGTTGGGTACCTTAATCTTGGGGACACTATTGGTGTGGCTTGCTTTGTTCTTTCAAAGACAGATGATGTGATCCTAATCGTTCATGTATAAGACATATGAGTGAGGGCGTCATATGCAAAGAGTTTGCATAGAGATCAGACCAGGAGATAAGTCACATTCACTTTACAACACCGTTTACTGTTGAAACTGAACATCTCATATATATAACCTAGGTAACTCGATCTTAATCCTGAGCTAACTATGAAGTCCTGTTTATTTAGGATTATCCTTTGATTTGCATGGGTGAGAGTGGCCAAACATCGCCGACTCAATAAGCCTACCATTTTTGGGATAAGACTAAATGGATAGCTGAGGACATAACTTTGCAAGATGGAATTCACTGATACTCATTTTATGGTTAGTAAAGGTTGTTCTCTTAAGTGCTGACTCTGAGTCTTGAACAAAGGGGCCTCGCCCTCTCATAACCTTGAGAGGGACTTGGTTCAGTGATTGTATCGCGAACTAGTTGTTCATCAGAGGATCAGTGGAACTTAAGGAACAAGATGTAACTATAGGGGTAACACGGACATTTGACCTAGCTCTAGTTACGAACAACTGGTGAAGGGTCAACTTATTAATCATGGTTATTTAAAGTGGACAAGAAATATATCTACAGTGAGGGGAGTGCAGCTACGGGCTATAGTGGAGTGTCCTGGAAGCTAACGAACGATGAATGACTAGGTTGGTGCAAGCAAAAGCACCTCTGGTGGATTCAAAGAAAAGAAGCCACCTTGATGCATCACGTTCAACACGTCGAGCTAATGACGTTAAACAAGTGCTTATGGGAGGCAACCCAAGTAAGTTAAGTTGTGTTTTTCTTTTTGCTTTTGAATTATTTTTTGTTTTTGTTTTGTAGGTCTTGGTTCCAGTTTCTCCTTTGCTTGCAATCATCCATAAAAGAGGACATCGTCATTCCAGGACAGTATTGTTCACTCCTCCTACTCTTTTATTGTTCTCATGTTTGATTATGCTTTATTTTCTTCATACATTAAGGACAATGCATGCTTTAAGTTTGGGGGTGGAATAGCATGTTTGTGGAGCCCTTGAGCATCTGAGTTCGGGCTATACTTTTAAGCTTTCTTTGAATTGAGTATATGGTTGTTTTCTGGATGATATTTTTGCATGACTATGATTTCATAGGATAGACTTTCTTGTCAATTTTCAAGCTTTCGATGAGTTGTAATCATGAGTGCCCAAAAAGGGAGACTTTTTAAACTTTTTCTAGGAGATGTCTTGCATGAGTAGAGTATTTGTCTTGGCTAGATTTAGATTTGAATGCTTAGGAGCAAATTATTAGCTTCATATATGGTTGTTGGCACCTCGATAGGTGTAGGGAAGAGCTAAAGAGTTATTATTTTTTTTTTTTACAAATTAACATGTTTGATCTTGCTTAGGAGGAAAGAAAAGAACATATGCTTATCATGCTCATAAAGAAAAATCATTCTTGTTGTTACAATTTGAAAGAAAAAAAAAAGAAAGTCACAAGGGTTTTCCTAGTAAGGTTTTAACGAGGCATATATTTTATATACAATGGATATCTAAGGGGGGTATTGTAAATATACATTTGTATATATTAGATATCCATATTACTCCATTAGTTTTAGTCAACCTATAATTGTAGTTATTCTCACTACAAGAATTAAAACATTTCCTGACGGTTTTTCTCCCGACGCTTACGTAAGCGTGGGCAGATATAGGTATTCCCAACGATTTTTAAAACGTTGGGATATATATAGGTAATGCCAACGCTTTCATCAAACCGTTGGGGCATATATAGGTAATGCCAACGACATAATAAAATCGTTGGCATATGTATAGAAACTGCCAACGGATACAATTACCGTTGGCATATGTTTAGAAAATCCCGAAGGGTTGAATTCTTGATTTATTTTGTTCATTGGTATCGCCAACGGTTTATTTTAACCGTTGGGATATATATAGGTAATGCAAACGCTTGAATCAAACCGTTGGGGTAAATATAGGTAATGCCAACGGTCTAATATAACCGTTGGCAAATGTATAGGAACTGCCAACGGATACAATTACCGTTGGCATATGTTTAGAAAATCCCAAAGGGTTGAATTCTTGATTTATTTTGTTCGTTGGTATCGCCAACGGTTTATTGGAACCGTTGGCATATGTTGAGGATAACCCAACGGTTTTGTAATTCGTTGGGATATACCCAACGGTTTATTTCCCAAATGGTTGATTTATTTGGTTCACTGGTATGGCCAACGGTTTATTTAAACCGACGACATATGTATACTAAAGCCCAACGGTTTTATAATTCGTTGGGTTATATAGTATTAATCCCAACGGTTCAAAATAACCATAGGAATATATTTAGGACCGCTAACGGTTTATTTTCTATGGCAACGGTTTGGTATGACCGTCGGCGGTTCCTTTATTGTCTACGATTCGATTAAGCCGTCGGGAGTTAAACCATGGGCAACGGTTTGGTTGAACCTTCTGTGAAAATACCTTATAACCCAACGGTTGAGATAAACCGTGGGTATATTTCATTAAAATAATTTCCCTTTTCACGATTTCCCTCCCTCCCTCTCCCCCATTTTCACGATTTCTTTCCCTCCATTTCTCCCATTTTCGCTCCATTCTCCATTTTCGCCCAAATCCTCCCCATTCGAGTTTCAGTCTTCGATTTCCTCGTTTGAGTTCAGTGTTCGTTGCCACCCATTTGAGTTTCAGTCTTCGTCGTTGCCGTTTGAGTTTCAGTCTTCGTTCGTCTTCCCAATTTCTGGCTTCGTTTGAGTTTCAGGTATGTTTCATTCATTCGTTCTTCATGTTCTTCGCGATTTGAATGCCTTTTCTCCATTCTCCAAACCCTAGCCACCATTTTTCACCTTGATAATTCTAATCTTCGTGACTTTTTCTTATTTCTATAGTGTGTGCACTTCTCTGGGATGGAAATCTTCGAGCTTCTTAGTCCACTCGAGGCAAAATCCACCAATTCCTTTAAATTTCTTGTTTCCAGGAGATGGGTATGCAATAAGCATTTCTCTGTTGCTTGTTCGTCTTCGTTATCTGGTATGCTTTATTTTGGCGACTGAGCTTTTTTTTTTTGTTTCATTATTATTAATTTGAATTGGGTTACTCTCAATTTTGGCATTGAGAGATGTGATAGTCTTGAGAGCTCCTCGATTGCGTTTTGTATGTCGAATTTTATCATTTGTATGAAATGTTTAAGTCTTGAACATGGAGTTTGATGTTTTAGTGGAAGGCTCGATTTGTGTTGACCCAAGTGAAGGGAAATTTGATGTTTTATTGGACTTGTTTACTACTGTTTTCTGAGTGATAAATGTTTCCTGCAAACAACAAATTGTTAACATTTTGCTTATACGCAATCTCAATGTTGGAGGGTATTACATTCAAGCAGAAGTTTGGAGTGAATTGGAAGGATAACTATATTTTTGTGTTGTAACGAAATGGGTCGGCAAGGTTTTAAATCAGTATTTTTCTATGAAGAAATGACAAGCTTTTGGAAATCTCATGTTGCTATAAAAAAAAAGGGTCCGAAAGTTGCAGCAACTTTATTTGGCATTTGTATTGCATTGCCTGACTTTTCCAATAGAAAAGTCAAATTAAGGTATTTTTTTAGTTTATTGAGATTAAAACACAAAAAACATGTTGATCGTGATTCTGAATCTCTGATAGTGTTTTAAAACATCTAACAATTTTTCTTCTTTCATTGTTATTTATATTGTCTTATATATTATCCTTTCTTGATTTTTTAGATTAAAATAGAACAACTATTGATCCGTGAGTCTAATAGTGTTTCAAAGCATCTATCCATTTTTTTGCTTTCTTTGCAATTTACATTGTTAGGTTTCAAAGCATCTATCCATTTTTTTTGCTTTCTTTTTCAATTTACATTGTTAGGTATATTGTCCTTTTTTATTTTTTGGATTAAAATACCAAAAATATGTTAATTTAATTCCCAGAATGGTTCAAAAATCATGTAAGTATATAGTTATGAGATTTAATAAGTTGATTTTACACTACAAGTAACACTATTAGTTTGTAAAAGATATTAATTATTTAATAGGTTCTGTCTTTGCGTGATAGAGATAATTCATTTGATGATTTGTATTCGTTAGCAATGGGACCTAGTTCTCAAGTGCGATCTTCTAGTGGATGCATTGTCAATGGCATACGATTCCACACTATATCGCGTGATAATCGTCGAGTTACACAAAATAGTGGAGTCATGGTGCTTGGAGAAGAGGAAGGTGAAGGAGATGAGATGAATTTCTACAGTGTGTTGGATTAGGTGTTGGACTTAGAATATGTGAAAAGAAGGCGAGTTATTATTTTTAAATGTACATGCTTCGACACAGATAAAAAAAGAATCGATCACACGTAGAATTAGGGTTGACATCGATTAACACATCTCATTATTGGTATGTTGATGATCCGTTCATCCTTGCTATACAAGGAAAACAAGTGTTTTTCCTTAACGACCCGAAACATGGTCGTAATTGGAAGGTAGTGCAAGTTGTACAAAATAAGCGCTTATGGGACGTTCCAGAGGTAGAAAATCATGGTAATGACCAACTTGAGTTGTTGGAAGTTGAGAGAAGACTCAGAGTTGACGAATCCATTGAAGAAAGCACACTATGCAGAGATGATGTTGATCCTATGGTGGTGGAAGAACAAATAAGTCAAACCCATAAGAACGACGATTTCATAAACGACGAGGAAGAGGATGTAGAAACATCTACTGAGACTACCTCTAGCTCGAACGAAAGCTCTGATTCAAATCACGATAGCGATTGA

mRNA sequence

ATGCTAAATGCATTTACAGATGCTAAGAAAGTGACCAAGTCACATATACCAGCTGCAAATACACCATCGAAAATTGATATCCCAACGCAACAAGTTATCATAACTAATGAGTCTGCGACACGCCAGAAGCGTGGTAGACCAATGGGTTCCAAAGATAAAAATCCTCGAAAAAGAAAAGTAGTCAATAATCAAAACGACGTAATTGATAATGTGGATATTCCAGAAGAAATCCTGAATGTGACTACTCATAATAATATCGAAGAAGGTCAAATACCTGAGGATAATAATGAAATTTCGACACTAGAAGATGCCAAGCCTGTGGGATACAAATGGGTATTTATAAGAAAAAGAAATGAAAAGAATGAGGTCACAAGATATAAAGCGAGACTTTTTGCACATGGATTCTCGCAAAGGGCTGGTATTGATTATGAGGAGACATATTCTCCTTTGGTGGATGCAATAACATTGAGATATTTAACTGACCTGACTGTAAAAAGCTTGACATGCATCTCATGGATGTTGGTGCAAGCAAAAGCACCTCTGGTGGATTCAAAGAAAAGAAGCCACCTTGATGCATCACGTTCAACACGTCGAGCTAATGACGTTAAACAAGTGCTTATGGGAGGCAACCCAATGTTCGTTGCCACCCATTTGAGTTTCAGTCTTCGTCGTTGCCGTTTGAGTTTCAGTCTTCGTTCGTCTTCCCAATTTCTGGCTTCGTTTGAGTTTCAGTGTGTGCACTTCTCTGGGATGGAAATCTTCGAGCTTCTTAGTCCACTCGAGGCAAAATCCACCAATTCCTTTAAATTTCTTGTTTCCAGGAGATGGGTATGCAATAAGCATTTCTCTGTTGCTTGTTCGTCTTCGTTATCTGCAATGGGACCTAGTTCTCAAGTGCGATCTTCTAGTGGATGCATTGTCAATGGCATACGATTCCACACTATATCGCGTGATAATCGTCGAGTTACACAAAATAGTGGAGTCATGGTGCTTGGAGAAGAGGAAGGTGAAGGAGATGAGATGAATTTCTACAGAAAACAAGTGTTTTTCCTTAACGACCCGAAACATGGTCGTAATTGGAAGGTAGTGCAAGTTGTACAAAATAAGCGCTTATGGGACGTTCCAGAGGTAGAAAATCATGGTAATGACCAACTTGAGTTGTTGGAAGTTGAGAGAAGACTCAGAGTTGACGAATCCATTGAAGAAAGCACACTATGCAGAGATGATGTTGATCCTATGGTGGTGGAAGAACAAATAAGTCAAACCCATAAGAACGACGATTTCATAAACGACGAGGAAGAGGATGTAGAAACATCTACTGAGACTACCTCTAGCTCGAACGAAAGCTCTGATTCAAATCACGATAGCGATTGA

Coding sequence (CDS)

ATGCTAAATGCATTTACAGATGCTAAGAAAGTGACCAAGTCACATATACCAGCTGCAAATACACCATCGAAAATTGATATCCCAACGCAACAAGTTATCATAACTAATGAGTCTGCGACACGCCAGAAGCGTGGTAGACCAATGGGTTCCAAAGATAAAAATCCTCGAAAAAGAAAAGTAGTCAATAATCAAAACGACGTAATTGATAATGTGGATATTCCAGAAGAAATCCTGAATGTGACTACTCATAATAATATCGAAGAAGGTCAAATACCTGAGGATAATAATGAAATTTCGACACTAGAAGATGCCAAGCCTGTGGGATACAAATGGGTATTTATAAGAAAAAGAAATGAAAAGAATGAGGTCACAAGATATAAAGCGAGACTTTTTGCACATGGATTCTCGCAAAGGGCTGGTATTGATTATGAGGAGACATATTCTCCTTTGGTGGATGCAATAACATTGAGATATTTAACTGACCTGACTGTAAAAAGCTTGACATGCATCTCATGGATGTTGGTGCAAGCAAAAGCACCTCTGGTGGATTCAAAGAAAAGAAGCCACCTTGATGCATCACGTTCAACACGTCGAGCTAATGACGTTAAACAAGTGCTTATGGGAGGCAACCCAATGTTCGTTGCCACCCATTTGAGTTTCAGTCTTCGTCGTTGCCGTTTGAGTTTCAGTCTTCGTTCGTCTTCCCAATTTCTGGCTTCGTTTGAGTTTCAGTGTGTGCACTTCTCTGGGATGGAAATCTTCGAGCTTCTTAGTCCACTCGAGGCAAAATCCACCAATTCCTTTAAATTTCTTGTTTCCAGGAGATGGGTATGCAATAAGCATTTCTCTGTTGCTTGTTCGTCTTCGTTATCTGCAATGGGACCTAGTTCTCAAGTGCGATCTTCTAGTGGATGCATTGTCAATGGCATACGATTCCACACTATATCGCGTGATAATCGTCGAGTTACACAAAATAGTGGAGTCATGGTGCTTGGAGAAGAGGAAGGTGAAGGAGATGAGATGAATTTCTACAGAAAACAAGTGTTTTTCCTTAACGACCCGAAACATGGTCGTAATTGGAAGGTAGTGCAAGTTGTACAAAATAAGCGCTTATGGGACGTTCCAGAGGTAGAAAATCATGGTAATGACCAACTTGAGTTGTTGGAAGTTGAGAGAAGACTCAGAGTTGACGAATCCATTGAAGAAAGCACACTATGCAGAGATGATGTTGATCCTATGGTGGTGGAAGAACAAATAAGTCAAACCCATAAGAACGACGATTTCATAAACGACGAGGAAGAGGATGTAGAAACATCTACTGAGACTACCTCTAGCTCGAACGAAAGCTCTGATTCAAATCACGATAGCGATTGA

Protein sequence

MLNAFTDAKKVTKSHIPAANTPSKIDIPTQQVIITNESATRQKRGRPMGSKDKNPRKRKVVNNQNDVIDNVDIPEEILNVTTHNNIEEGQIPEDNNEISTLEDAKPVGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAITLRYLTDLTVKSLTCISWMLVQAKAPLVDSKKRSHLDASRSTRRANDVKQVLMGGNPMFVATHLSFSLRRCRLSFSLRSSSQFLASFEFQCVHFSGMEIFELLSPLEAKSTNSFKFLVSRRWVCNKHFSVACSSSLSAMGPSSQVRSSSGCIVNGIRFHTISRDNRRVTQNSGVMVLGEEEGEGDEMNFYRKQVFFLNDPKHGRNWKVVQVVQNKRLWDVPEVENHGNDQLELLEVERRLRVDESIEESTLCRDDVDPMVVEEQISQTHKNDDFINDEEEDVETSTETTSSSNESSDSNHDSD
Homology
BLAST of Lag0015652 vs. NCBI nr
Match: KAF3653611.1 (putative auxin-induced in root cultures protein 12-like [Capsicum annuum])

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-37
Identity = 96/177 (54.24%), Postives = 119/177 (67.23%), Query Frame = 0

Query: 1   MLNAFTDAKKVTKSHIPAANTPSKIDIPTQQVI--ITNESATRQKRGRPMGSKDKNPRKR 60
           M +AFTD K++TKS+IPAAN P +I++P +     I +ES TR KRGRP+ SKDKNPRKR
Sbjct: 1   MSDAFTDLKRITKSNIPAANVPIRIEVPKEPSSNKIASESQTRLKRGRPLDSKDKNPRKR 60

Query: 61  KVVNNQNDVID----------NVDIPEEILNVTTHNNIEEGQIPEDNNE------ISTLE 120
              N+++++I           N DIPEEI    T  N EE  I    NE      + T +
Sbjct: 61  SAKNDKDNIIKDSPEETQNLINPDIPEEISESETQVN-EELSISSTGNEEVFGPVVQTPD 120

Query: 121 DAKPVGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAITLRYL 160
             KPVGYKWVF+RKRN+KNE+ RYKARL A  FSQR G+DYEETYSP++DAIT RYL
Sbjct: 121 GIKPVGYKWVFVRKRNKKNEIVRYKARLVAQRFSQRPGVDYEETYSPIMDAITFRYL 176

BLAST of Lag0015652 vs. NCBI nr
Match: KAG7556635.1 (Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis suecica])

HSP 1 Score: 159.5 bits (402), Expect = 7.1e-35
Identity = 101/214 (47.20%), Postives = 120/214 (56.07%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQ--QVIITNESATRQKRGRPMGSKDKNPRKRKV 62
           +AF D K VTKS+IPAAN P++I+IP +  +   T ES TR KRGRP+G+KDKNPRKRK 
Sbjct: 94  DAFADTKTVTKSYIPAANVPARIEIPQESGRADDTRESKTRLKRGRPVGAKDKNPRKRKE 153

Query: 63  VNNQNDVIDNVDIPEEILNVTTH--NNIEEGQIPEDNNEIS------------------- 122
           V       D   I E IL  T H  N+ +E   PE N+EIS                   
Sbjct: 154 VEKH----DIPKIAESILEETNHESNDNDEHHEPEGNHEISINYIHNGKIWDRNKMDEVN 213

Query: 123 -------------------------------TLEDAKPVGYKWVFIRKRNEKNEVTRYKA 163
                                          T ED +PVGYKWVF+RKRNE+NE+TRYKA
Sbjct: 214 DVFSYLLSKEIDEENEDPEPKSRNVFGPIVLTPEDVRPVGYKWVFVRKRNEENEITRYKA 273

BLAST of Lag0015652 vs. NCBI nr
Match: KAG7552425.1 (Zinc finger SWIM-type [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 159.5 bits (402), Expect = 7.1e-35
Identity = 101/214 (47.20%), Postives = 120/214 (56.07%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQ--QVIITNESATRQKRGRPMGSKDKNPRKRKV 62
           +AF D K VTKS+IPAAN P++I+IP +  +   T ES TR KRGRP+G+KDKNPRKRK 
Sbjct: 493 DAFADTKTVTKSYIPAANVPARIEIPQESGRADDTRESKTRLKRGRPVGAKDKNPRKRKE 552

Query: 63  VNNQNDVIDNVDIPEEILNVTTH--NNIEEGQIPEDNNEIS------------------- 122
           V       D   I E IL  T H  N+ +E   PE N+EIS                   
Sbjct: 553 VEKH----DIPKIAESILEETNHESNDNDEHHEPEGNHEISINYIHNGKIWDRNKMDEVN 612

Query: 123 -------------------------------TLEDAKPVGYKWVFIRKRNEKNEVTRYKA 163
                                          T ED +PVGYKWVF+RKRNE+NE+TRYKA
Sbjct: 613 DAFSYLLSKEIDEENEDPEPKSRNVFGPIVLTPEDVRPVGYKWVFVRKRNEENEITRYKA 672

BLAST of Lag0015652 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-33
Identity = 96/231 (41.56%), Postives = 119/231 (51.52%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQQVIITNESATRQKRGRPMGSKDKNPRKRKVVN 62
           +AF D+K+VTKSHIPA N P KID+P +Q+   NES  R KRGRP+GSKDKNPRK++ + 
Sbjct: 497 DAFNDSKRVTKSHIPAENAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKREI- 556

Query: 63  NQNDVIDNVDIPEEIL--------NVTTHN------------------------NIEEGQ 122
           +++ + D +  PEE+         N T  N                        NI    
Sbjct: 557 DESTISDKIQPPEEVAPKEPILEENETIENSINFITSRKSWNRKEIIIDNIFAYNIALDI 616

Query: 123 IPEDNNE-------------------------------------ISTLEDAKPVGYKWVF 165
           + ED +                                      + T E  KPVGYKWVF
Sbjct: 617 MAEDEDHELRSVDECRGRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYKWVF 676

BLAST of Lag0015652 vs. NCBI nr
Match: KAA0046643.1 (hypothetical protein E6C27_scaffold427G00020 [Cucumis melo var. makuwa] >TYK18180.1 hypothetical protein E5676_scaffold411G001130 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 3.0e-33
Identity = 82/159 (51.57%), Postives = 112/159 (70.44%), Query Frame = 0

Query: 292 AMGPSSQVRSSSGCIVNGIRFHTISRDNRRVTQNSGVMVLGEEEGEG-DEMNFY------ 351
           AMGPS  VR  +GCIV GIRFHTI  D+RR TQNSG+MV+GE +  G  + NFY      
Sbjct: 176 AMGPSFDVRCYNGCIVGGIRFHTIELDSRRTTQNSGIMVIGESDASGTGDNNFYGVLDEV 235

Query: 352 --RKQVFFLNDPKHGRNWKVVQVVQNKRLWDVPEVENHGNDQLELLEVERRLRVDESIEE 411
               + F+++DPK+G NWKVVQV+QNKR+WDVPEVE+  ND + +LEV    +VD+ IE+
Sbjct: 236 LHHIKFFYVDDPKNGSNWKVVQVIQNKRIWDVPEVEDVENDHINILEVVVSHQVDDHIED 295

Query: 412 STLCRDDVDPMVVEEQISQTHKNDDFINDEEEDVETSTE 442
            TLCR+DVDP +VE  + + H  D+FI+D +E +  +++
Sbjct: 296 DTLCRNDVDPTIVERPVVR-HVTDNFIDDVDEHLSHASD 333

BLAST of Lag0015652 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-08
Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 107  VGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAITLRYLTDLTV 165
            VG +W+F +K N    + RYKARL A G++QR G+DY ET+SP++ + ++R +  + V
Sbjct: 998  VGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAV 1055

BLAST of Lag0015652 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-06
Identity = 42/157 (26.75%), Postives = 70/157 (44.59%), Query Frame = 0

Query: 17   PAANTPSKIDIPTQQVIITNESATRQKRGRPMGSKDKNPRKRKVVNNQNDVIDNVDIPEE 76
            P    P  I +  Q  + T+  ATR K G    ++  +       N++         P  
Sbjct: 891  PVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSE---------PRT 950

Query: 77   ILNVTTHNNIEEGQIPEDNNEIS--TLEDAKP-------VGYKWVFIRKRNEKNEVTRYK 136
             +     +   +    E N +I   T +   P       VG +W+F +K N    + RYK
Sbjct: 951  AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYK 1010

Query: 137  ARLFAHGFSQRAGIDYEETYSPLVDAITLRYLTDLTV 165
            ARL A G++QR G+DY ET+SP++ + ++R +  + V
Sbjct: 1011 ARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAV 1038

BLAST of Lag0015652 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-06
Identity = 49/154 (31.82%), Postives = 76/154 (49.35%), Query Frame = 0

Query: 25  IDIPTQQ--VIITNESATRQKRGRPMGSKDKNPRKRKVVNNQNDVIDNVDIP---EEILN 84
           ID PT+   + I N  + R K    +   +++    KVV N + + +  D+P   +EI  
Sbjct: 842 IDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFN--DVPNSFDEIQY 901

Query: 85  VTTHNNIEEGQIPEDN----NEISTL----EDAKPVGYKWVFIRKRNEKNEVTRYKARLF 144
               ++ EE    E N    N   T+    E+   V  +WVF  K NE     RYKARL 
Sbjct: 902 RDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLV 961

Query: 145 AHGFSQRAGIDYEETYSPLVDAITLRYLTDLTVK 166
           A GF+Q+  IDYEET++P+    + R++  L ++
Sbjct: 962 ARGFTQKYQIDYEETFAPVARISSFRFILSLVIQ 993

BLAST of Lag0015652 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-05
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 107 VGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAITLRYLTDLT--V 166
           +G KWVF  K +    + R KARL A GF Q  GI + ETYSP+V   T+R + ++   +
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQL 128

Query: 167 KSLTCISWM 174
           +    I+WM
Sbjct: 129 EVGQSINWM 137

BLAST of Lag0015652 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-04
Identity = 37/125 (29.60%), Postives = 64/125 (51.20%), Query Frame = 0

Query: 51  KDKNPR--KRKVVNNQNDVIDNVDIPEEILNVTTH---NNI-----EEGQIPEDNNEIST 110
           + + PR   R+  + +  +I +   PE +  V +H   N +     EE +  + N     
Sbjct: 786 RSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKL 845

Query: 111 LE---DAKPVGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAITLR 163
           +E     +P+  KWVF  K++   ++ RYKARL   GF Q+ GID++E +SP+V   ++R
Sbjct: 846 VELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIR 905

BLAST of Lag0015652 vs. ExPASy TrEMBL
Match: A0A2N9FK49 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15524 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.2e-37
Identity = 101/201 (50.25%), Postives = 121/201 (60.20%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQQV--IITNESATRQKRGRPMGSKDKNPRKRKV 62
           + FTD+KK+ KSHIPAAN P++I++P  Q+  I  NES TR KRGRP+G+KDK PRKRK+
Sbjct: 96  DVFTDSKKIVKSHIPAANNPARIEVPEGQLINIAANESKTRLKRGRPVGAKDKIPRKRKI 155

Query: 63  VNNQNDVIDNVDIPEEILNVTTHNNI---------------------------EEGQIPE 122
              Q      V  PEE + +    NI                           EE Q+PE
Sbjct: 156 QEKQ------VAAPEEAIPMKQATNIINLSKNCAHKSPENEPPEEGTPEELSPEEEQVPE 215

Query: 123 DNNEIS----------TLEDAKPVGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDY 165
            N+EIS          T E   PVGYKWVF+RKRNEKNE+ RYKARL A GFSQR GIDY
Sbjct: 216 -NDEISIHYYLDLIVQTPEGVMPVGYKWVFVRKRNEKNEIIRYKARLVAQGFSQRPGIDY 275

BLAST of Lag0015652 vs. ExPASy TrEMBL
Match: A0A1U9WYE0 (Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.5e-34
Identity = 96/231 (41.56%), Postives = 119/231 (51.52%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQQVIITNESATRQKRGRPMGSKDKNPRKRKVVN 62
           +AF D+K+VTKSHIPA N P KID+P +Q+   NES  R KRGRP+GSKDKNPRK++ + 
Sbjct: 497 DAFNDSKRVTKSHIPAENAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKREI- 556

Query: 63  NQNDVIDNVDIPEEIL--------NVTTHN------------------------NIEEGQ 122
           +++ + D +  PEE+         N T  N                        NI    
Sbjct: 557 DESTISDKIQPPEEVAPKEPILEENETIENSINFITSRKSWNRKEIIIDNIFAYNIALDI 616

Query: 123 IPEDNNE-------------------------------------ISTLEDAKPVGYKWVF 165
           + ED +                                      + T E  KPVGYKWVF
Sbjct: 617 MAEDEDHELRSVDECRGRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYKWVF 676

BLAST of Lag0015652 vs. ExPASy TrEMBL
Match: A0A5D3D342 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001130 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-33
Identity = 82/159 (51.57%), Postives = 112/159 (70.44%), Query Frame = 0

Query: 292 AMGPSSQVRSSSGCIVNGIRFHTISRDNRRVTQNSGVMVLGEEEGEG-DEMNFY------ 351
           AMGPS  VR  +GCIV GIRFHTI  D+RR TQNSG+MV+GE +  G  + NFY      
Sbjct: 176 AMGPSFDVRCYNGCIVGGIRFHTIELDSRRTTQNSGIMVIGESDASGTGDNNFYGVLDEV 235

Query: 352 --RKQVFFLNDPKHGRNWKVVQVVQNKRLWDVPEVENHGNDQLELLEVERRLRVDESIEE 411
               + F+++DPK+G NWKVVQV+QNKR+WDVPEVE+  ND + +LEV    +VD+ IE+
Sbjct: 236 LHHIKFFYVDDPKNGSNWKVVQVIQNKRIWDVPEVEDVENDHINILEVVVSHQVDDHIED 295

Query: 412 STLCRDDVDPMVVEEQISQTHKNDDFINDEEEDVETSTE 442
            TLCR+DVDP +VE  + + H  D+FI+D +E +  +++
Sbjct: 296 DTLCRNDVDPTIVERPVVR-HVTDNFIDDVDEHLSHASD 333

BLAST of Lag0015652 vs. ExPASy TrEMBL
Match: A0A1U9WYD5 (Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-33
Identity = 95/231 (41.13%), Postives = 119/231 (51.52%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQQVIITNESATRQKRGRPMGSKDKNPRKRKVVN 62
           +AF D+K+VTKSHIPA N P KID+P +Q+   NES  R KRGRP+GSKDKNPRK++ + 
Sbjct: 497 DAFNDSKRVTKSHIPAENAPIKIDVPEEQITSANESKARLKRGRPLGSKDKNPRKKRGI- 556

Query: 63  NQNDVIDNVDIPEEIL--------NVTTHNNI---------------------------- 122
           +++ + D +  PEE+         N T  N+I                            
Sbjct: 557 DESTISDKIQPPEEVAPKEPILEENETIENSINFVTSRKSWNRKEIIIDNIFAYNIALDI 616

Query: 123 ---EEGQIPEDNNE------------------------------ISTLEDAKPVGYKWVF 165
              +E   P   +E                              + T E  KPVGYKWVF
Sbjct: 617 MAEDEDHEPRSVDECRGRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYKWVF 676

BLAST of Lag0015652 vs. ExPASy TrEMBL
Match: A0A438I8W9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1023 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-33
Identity = 94/210 (44.76%), Postives = 118/210 (56.19%), Query Frame = 0

Query: 3   NAFTDAKKVTKSHIPAANTPSKIDIPTQQVIITNESATRQKRGRPMGSKDKNPRKRKVVN 62
           +AF D KKVTKSHIPAANTP++ID+P  Q  +TNES  R KRGRP+GSKD  PRKR+   
Sbjct: 227 DAFIDTKKVTKSHIPAANTPARIDVPIGQ--LTNESKIRLKRGRPVGSKDVTPRKRRTQE 286

Query: 63  NQNDVIDNVDIPEEILNVTTHNNIEEGQI------------------------PEDNN-- 122
             + + + + + ++   +     +EE QI                        PED +  
Sbjct: 287 KLSTLEEAIKMTDQ-FKIDKSIALEEAQIMQKAPEEVHIEQEAPEEAHIEQETPEDPHIE 346

Query: 123 ----------------------EISTLEDAKPVGYKWVFIRKRNEKNEVTRYKARLFAHG 165
                                  + T ED KPVGYKWVF+RKRNE NE+ RYKARL A G
Sbjct: 347 REAPEEAQAELNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQG 406

BLAST of Lag0015652 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-08
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 97  EISTL-EDAKPVGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAIT 156
           EI TL  + KP+G KWV+  K N    + RYKARL A G++Q+ GID+ ET+SP+    +
Sbjct: 116 EICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTS 175

Query: 157 LRYL 160
           ++ +
Sbjct: 176 VKLI 179

BLAST of Lag0015652 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-06
Identity = 28/69 (40.58%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 107 VGYKWVFIRKRNEKNEVTRYKARLFAHGFSQRAGIDYEETYSPLVDAITLRYLTDLT--V 166
           +G KWVF  K +    + R KARL A GF Q  GI + ETYSP+V   T+R + ++   +
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQL 128

Query: 167 KSLTCISWM 174
           +    I+WM
Sbjct: 129 EVGQSINWM 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF3653611.12.0e-3754.24putative auxin-induced in root cultures protein 12-like [Capsicum annuum][more]
KAG7556635.17.1e-3547.20Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis suecica][more]
KAG7552425.17.1e-3547.20Zinc finger SWIM-type [Arabidopsis thaliana x Arabidopsis arenosa][more]
AQY61295.11.3e-3341.56Pol [Coffea arabica][more]
KAA0046643.13.0e-3351.57hypothetical protein E6C27_scaffold427G00020 [Cucumis melo var. makuwa] >TYK1818... [more]
Match NameE-valueIdentityDescription
Q94HW22.0e-0843.10Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.2e-0626.75Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041465.5e-0631.82Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925204.6e-0540.58Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
P109781.8e-0429.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A2N9FK496.2e-3750.25Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A1U9WYE06.5e-3441.56Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1[more]
A0A5D3D3421.4e-3351.57DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1U9WYD52.5e-3341.13Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1[more]
A0A438I8W92.5e-3344.76Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
AT4G23160.12.1e-0843.75cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.13.3e-0640.58Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 102..175
e-value: 3.7E-15
score: 56.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..457
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015652.1Lag0015652.1mRNA