Lag0015648 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015648
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 18586281 .. 18587262 (-)
RNA-Seq ExpressionLag0015648
SyntenyLag0015648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCTCTCCTGCATTTCCTCCAACCACCTCACCCGCCAAGCCAAAGGGCAAATCACCCAAGGCCGCATCTCCCAAAAATCCAGTCCCTGAGGTATTTAAAGATGTTAATTTTCAGGAAATGATGGAGATCATGAAGAAAAGAGATTTCCTCAATGAAAAGGGATTCTCTAACCAAGCAAGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTTCCAGTACAAGTGGCAGGAGTTCTGTGCTCACCCTCAGGAGGTTGTTCTACCTCTAGTTCGTGAATTCTATGCCAACCTGAGGGAGGAGAGCATTACCATGGCGGTGGTGAGGGAAAGATGGTCAGTTTCTTCTCAGTCACATCAACAGGGTGTACAAGATCAAGGCACCCTTGAACCCAAGAGGGAATGACGTGATCAGGAACCCTTCGTCCAAACAAATGAAGGAAGCTTTGAAGCTTGTGGCCAACAAAGGTGTCCAATAGAAAGAATCACAAACGAAAGTGAAGTTTTAGTGCCAAGCGACTTAAAGCCAGAATCGGCAGTGTCGCTTCACTTCATGAAGGTTTAGGGTCGCTTCACTTGATGCCAACCACCCATGACCGCACGATTTCAGTGATAGAGTGATGCTACTCTATTGCCTTATGAAGGGGTTGAAGACCAACGTAGGGAGCATCATCAGGGATGAGATCTTAGCCTGTGGACAGAAAAGGGCATGCAAGCTTTTCTTTGGCTCACTCATCACCCAACTCTGTTAAAGGGTGAAGATTGTGCCAGGCAAGGACGAGGAGTGCCATTTCTTTAAACCAGCATTTGACTTGTCCTTGATAGGGAAGCTTCAGCAGAACAACATCCAGAGGAATGATAAAGCCTCCACATCACAGGCCACACCTCAATCAAGGCTGAATGTAGCCTCTCCATCCCAGCACACTCCTTTTACAGGGCCTTCACAAGCATCAGAAGCCCTAGGCATGGTCCACCACTAG

mRNA sequence

ATGGACTCCTCTCCTGCATTTCCTCCAACCACCTCACCCGCCAAGCCAAAGGGCAAATCACCCAAGGCCGCATCTCCCAAAAATCCAGTCCCTGAGGTATTTAAAGATGTTAATTTTCAGGAAATGATGGAGATCATGAAGAAAAGAGATTTCCTCAATGAAAAGGGATTCTCTAACCAAGCAAGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTTCCAGTACAAGTGGCAGGAGTTCTGTGCTCACCCTCAGGAGGTTGTTCTACCTCTAGTTCGTGAATTCTATGCCAACCTGAGGGAGGAGAGCATTACCATGGCGGTGGTGAGGGAAAGATGGGTGAAGATTGTGCCAGGCAAGGACGAGGAGTGCCATTTCTTTAAACCAGCATTTGACTTGTCCTTGATAGGGAAGCTTCAGCAGAACAACATCCAGAGGAATGATAAAGCCTCCACATCACAGGCCACACCTCAATCAAGGCTGAATGTAGCCTCTCCATCCCAGCACACTCCTTTTACAGGGCCTTCACAAGCATCAGAAGCCCTAGGCATGGTCCACCACTAG

Coding sequence (CDS)

ATGGACTCCTCTCCTGCATTTCCTCCAACCACCTCACCCGCCAAGCCAAAGGGCAAATCACCCAAGGCCGCATCTCCCAAAAATCCAGTCCCTGAGGTATTTAAAGATGTTAATTTTCAGGAAATGATGGAGATCATGAAGAAAAGAGATTTCCTCAATGAAAAGGGATTCTCTAACCAAGCAAGAGCACTGCCAGAGTTCGTAAGCAGAGTTATCTTCCAGTACAAGTGGCAGGAGTTCTGTGCTCACCCTCAGGAGGTTGTTCTACCTCTAGTTCGTGAATTCTATGCCAACCTGAGGGAGGAGAGCATTACCATGGCGGTGGTGAGGGAAAGATGGGTGAAGATTGTGCCAGGCAAGGACGAGGAGTGCCATTTCTTTAAACCAGCATTTGACTTGTCCTTGATAGGGAAGCTTCAGCAGAACAACATCCAGAGGAATGATAAAGCCTCCACATCACAGGCCACACCTCAATCAAGGCTGAATGTAGCCTCTCCATCCCAGCACACTCCTTTTACAGGGCCTTCACAAGCATCAGAAGCCCTAGGCATGGTCCACCACTAG

Protein sequence

MDSSPAFPPTTSPAKPKGKSPKAASPKNPVPEVFKDVNFQEMMEIMKKRDFLNEKGFSNQARALPEFVSRVIFQYKWQEFCAHPQEVVLPLVREFYANLREESITMAVVRERWVKIVPGKDEECHFFKPAFDLSLIGKLQQNNIQRNDKASTSQATPQSRLNVASPSQHTPFTGPSQASEALGMVHH
Homology
[Close]
BLAST of Lag0015648 vs. NCBI nr
Match: PON85987.1 (hypothetical protein TorRG33x02_181920, partial [Trema orientale])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 44  EIMKKRDFLNEKGF---SNQARALPEFVSRVIFQYKWQEFCAHPQEVVLPLVREFYANL- 103
           E ++K+    EKGF   +++      F+++VI Q+ W++FCAHP++ ++PLVREFYANL 
Sbjct: 59  ENIQKQPLNAEKGFLLNNSETMGQQPFIAQVINQHNWRQFCAHPEDPIVPLVREFYANLT 118

Query: 104 --REESITMAVVRERWVK 116
              E+++ +  V+  W +
Sbjct: 119 DPEEDTVYVRGVQVPWTE 136

[Close]
BLAST of Lag0015648 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-05
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 44  EIMKKRDFLNEKGF---SNQARALPEFVSRVIFQYKWQEFCAHPQEVVLPLVREFYANL- 103
           E +K +    EKGF   +N+    P F++ VI Q+ WQ FCAH ++ ++PLVREFYANL 
Sbjct: 27  EHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPIVPLVREFYANLT 86

Query: 104 --REESITMAVVRERW 114
              E+++ +  V+  W
Sbjct: 87  DPEEDTVYVKGVQVPW 102

[Close]
BLAST of Lag0015648 vs. NCBI nr
Match: PON66208.1 (hypothetical protein PanWU01x14_110740, partial [Parasponia andersonii])

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-05
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 44  EIMKKRDFLNEKGF---SNQARALPEFVSRVIFQYKWQEFCAHPQEVVLPLVREFYANL 100
           E ++ R    EKGF   SN     P F+  VI Q+ WQ FC HP++ ++PLVREFYANL
Sbjct: 6   ENIQNRPLSAEKGFIWDSNVPPGQPPFIVDVIIQHNWQLFCTHPKDPIVPLVREFYANL 64

[Close]
BLAST of Lag0015648 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-05
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 0 

Query: 46  MKKRDFLNEKGF---SNQARALPEFVSRVIFQYKWQEFCAHPQEVVLPLVREFYANLREE 105
           ++ R    EKGF   +++      F+++VI Q+ W++FCAHP++ ++PLVREFYANL + 
Sbjct: 38  IQNRPLNAEKGFVLDNSETMGQLPFIAQVITQHNWKQFCAHPEDPIVPLVREFYANLTDP 97

Query: 106 SITMAVVR 111
                 VR
Sbjct: 98  EENTVYVR 105

[Close]
BLAST of Lag0015648 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 58.2 bits (139), Expect = 9.1e-05
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 0 

Query: 19  KSPKAASPKNPVPEVFKDVNFQEMMEIMKKRDFLNEKGF---SNQARALPEFVSRVIFQY 78
           K+ KA   K+   E   + N Q        R    EKGF   +++    P F+  VI Q+
Sbjct: 9   KASKAVKLKSEAAETRYEENIQ-------NRPLSAEKGFVGDNSKPLEKPPFIEDVITQH 68

Query: 79  KWQEFCAHPQEVVLPLVREFYANLREESITMAVVR 111
            WQ FCAHP++++ PLVREFYAN+         VR
Sbjct: 69  NWQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVR 96

The following BLAST results are available for this feature:
BLAST of Lag0015648 vs. NCBI nr
Match NameE-valueIdentityDescription
PON85987.11.4e-0537.18hypothetical protein TorRG33x02_181920, partial [Trema orientale][more]
PON90635.13.1e-0540.79hypothetical protein TorRG33x02_134920 [Trema orientale][more]
PON66208.15.3e-0549.15hypothetical protein PanWU01x14_110740, partial [Parasponia andersonii][more]
PON46472.17.0e-0539.71hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON42276.19.1e-0536.84hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
BLAST of Lag0015648 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015648.1Lag0015648.1mRNA