Lag0015645 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015645
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr12: 18496063 .. 18496661 (-)
RNA-Seq ExpressionLag0015645
SyntenyLag0015645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACGGGAAAGAAGAACGCAAGAGATGAAATAACTTGGTTCCCAAACAAGAAAGGCACCTTCACGGTGAAAAGTGCCTATCACCTAGCCAAATATCACATTTTCGGGCTAGAGGCGTCTCAATCAGACAGAAGGAGATCTTCTTTGTTTTGGAAATCCATATGGTCCTTAAAGGTTCTTCCTAGATCAAAAGTATGTGTTTAGAAGATTGTGAACGATATTATCCCCACAAAGGCTAATACCCAGGCCAAAGGGATCGCTATTCAGGCTTCGTGTGCGATCTGTGGAAAAGGGAATGAAACCACATCCCACCTAATGTGGGATTGCAAAATTCCTAGATCAGTGTGGCCCATTTTTATCCCCAAATTGACTTTTTCCCCCTATTCTGCAGGAAAGATCGGGATCCAAAAGAGATTTGGGCGTGGATGATCGACAATCTATCGAAGGAAGAAATTGAAAGGGGAGCGACAATTTTATGGAGCATATGGAATTTCAAAAACAAGATAATTCACAACAATTCTATCCCAACAACAGAATCCTTGCAAATTTACATTGAAGCGAATATTACGGAGCGAACTCTTACCTTTGAAAATTAG

mRNA sequence

ATGCCCACGGGAAAGAAGAACGCAAGAGATGAAATAACTTGGTTCCCAAACAAGAAAGGCACCTTCACGGTGAAAAGTGCCTATCACCTAGCCAAATATCACATTTTCGGGCTAGAGGCGTCTCAATCAGACAGAAGGAGATCTTCTTTGTTTTGGAAATCCATATGGAAAGATCGGGATCCAAAAGAGATTTGGGCGTGGATGATCGACAATCTATCGAAGGAAGAAATTGAAAGGGGAGCGACAATTTTATGGAGCATATGGAATTTCAAAAACAAGATAATTCACAACAATTCTATCCCAACAACAGAATCCTTGCAAATTTACATTGAAGCGAATATTACGGAGCGAACTCTTACCTTTGAAAATTAG

Coding sequence (CDS)

ATGCCCACGGGAAAGAAGAACGCAAGAGATGAAATAACTTGGTTCCCAAACAAGAAAGGCACCTTCACGGTGAAAAGTGCCTATCACCTAGCCAAATATCACATTTTCGGGCTAGAGGCGTCTCAATCAGACAGAAGGAGATCTTCTTTGTTTTGGAAATCCATATGGAAAGATCGGGATCCAAAAGAGATTTGGGCGTGGATGATCGACAATCTATCGAAGGAAGAAATTGAAAGGGGAGCGACAATTTTATGGAGCATATGGAATTTCAAAAACAAGATAATTCACAACAATTCTATCCCAACAACAGAATCCTTGCAAATTTACATTGAAGCGAATATTACGGAGCGAACTCTTACCTTTGAAAATTAG

Protein sequence

MPTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTTESLQIYIEANITERTLTFEN
Homology
BLAST of Lag0015645 vs. NCBI nr
Match: EEC68887.1 (hypothetical protein OsI_37529 [Oryza sativa Indica Group])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 0

Query: 6    KNARDEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWKDRDPK--E 65
            ++  D I W P+K G F+V+SAY LA   +   E+S S     +  W+ IWK + P+  +
Sbjct: 1452 RSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVK 1511

Query: 66   IWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTTESLQIYIEANI 115
            I+AW + +     +      LW  W  +N++IH  S P TE+ Q +I++ +
Sbjct: 1512 IFAWRVASNCLATMAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYV 1562

BLAST of Lag0015645 vs. NCBI nr
Match: KAE8774248.1 (putative calcium-binding protein CML8 [Hordeum vulgare])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = 0

Query: 3   TGKKNARDEITWFPNKKGTFTVKSAYHLAKYH---IFGLEASQSDRRRSSLFWKSIWKDR 62
           T  +   D ++WFP K G F+V+SAY LA Y     FG  AS S        W ++WK  
Sbjct: 11  TSPRQRCDFVSWFPEKNGQFSVRSAYRLATYDHNIAFGGGASCSAPSGVRSIWNAVWKSS 70

Query: 63  DPK--EIWAW-MIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTT 104
            P+  +I AW ++ N + E  +    ++W IW  +    H   IP T
Sbjct: 71  VPQKMKITAWKLLVNCTDEVRDMVIMVVWRIWQLRTDQSHGKEIPPT 117

BLAST of Lag0015645 vs. NCBI nr
Match: XP_030964218.1 (uncharacterized protein LOC115985418 [Quercus lobata])

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 36/118 (30.51%), Postives = 55/118 (46.61%), Query Frame = 0

Query: 1   MPTGKKNARDEITWFPNKKGTFTVKSAYHLAKYHI-FGLEASQSDRRRSSLFWKSIWKDR 60
           +P  +++  D ITW  NK G FT+KSAY +A   +  G  A  S+   S     ++W+  
Sbjct: 82  IPLSRRSVADSITWLHNKNGKFTIKSAYRVAPQVLKVGRGAKSSNGGCSESTIHALWECA 141

Query: 61  DPKEIWA---------------------WMIDNLSKEEIERGATILWSIWNFKNKIIH 97
             K++WA                     +++D LS EE+E      W IWN +N +IH
Sbjct: 142 VAKDVWASSVKILQKGYTGQTDLLHLLEYLLDRLSLEEVEVFLIQAWFIWNRRNSVIH 199

BLAST of Lag0015645 vs. NCBI nr
Match: XP_009346162.1 (PREDICTED: uncharacterized protein LOC103937909 [Pyrus x bretschneideri])

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 0

Query: 9   RDEITWFPNKKGTFTVKSAYHLAKYHIFG---LEASQSDRRRSSLFWKSIWKDRDPKEI- 68
           RD++ W  +KKG FTVK+AYH+A+  +     L +S S     ++ W +IWK   P ++ 
Sbjct: 101 RDQLVWHFDKKGRFTVKNAYHVARNWLLRPSLLASSSSPTNPFTVLWNTIWKACVPTKVK 160

Query: 69  -----------------WA-WMIDNLSKEEIERGATILWSIWNFKN 93
                            WA  M+ NL K + E    +LW+IW  KN
Sbjct: 161 MAEDPIKYRPYGCFLKEWALLMVQNLGKLDFECFLMLLWAIWMAKN 206

BLAST of Lag0015645 vs. NCBI nr
Match: ABB46931.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-05
Identity = 36/119 (30.25%), Postives = 56/119 (47.06%), Query Frame = 0

Query: 10   DEITWFPNKKGTFTVKSAYHLAKYHIFGLEASQSDRRRSSLFWKSIWK------------ 69
            D I W P+K G F+V+SAYHLA       E S S    +S  W ++WK            
Sbjct: 1534 DFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLSN 1593

Query: 70   --DRDPKEIWAWMIDNLSKEEIERGATILWSIWNFKNKIIHNNSIPTTESLQIYIEANI 115
              + DPK I   +++    E+      +LW IW+ +N+I+H    P     + +IE+ +
Sbjct: 1594 IRNGDPKVILD-LLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYV 1651

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EEC68887.11.5e-0832.43hypothetical protein OsI_37529 [Oryza sativa Indica Group][more]
KAE8774248.13.2e-0633.64putative calcium-binding protein CML8 [Hordeum vulgare][more]
XP_030964218.15.4e-0630.51uncharacterized protein LOC115985418 [Quercus lobata][more]
XP_009346162.14.6e-0533.02PREDICTED: uncharacterized protein LOC103937909 [Pyrus x bretschneideri][more]
ABB46931.26.0e-0530.25retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015645.1Lag0015645.1mRNA