Lag0015618 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015618
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome-c oxidases;electron carriers
Location	chr12: 17769501 .. 17771737 (+)
RNA-Seq Expression	Lag0015618
Synteny	Lag0015618

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGGTTGAAGCTTTCATTGTCGTTTCATCTTTAAAAGTTGACAGTTGGAAACCTCGCTTCATCTTCAAAGGTTGGTGGTGGAAGGACTCTCTCTTGCTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGTTGACAGTTGAATGCTTTGTTTTCGCTTCATCTTCAAAAGTTGGCGGCTTCACTTCATCTTCAAAAGTTGACAGTTGGCAGCTTCACTTCGTCTTCAAAAGTTGATAGTTGGCGGCTTCACTTCGTCTTCAAAAGTTTACAGTTGGCGGCCTTGCTTCTTTTTCAAAAGTTGACGGTTGACGACTTCATTTCATCTTCAAAAGTTGGCAGTTGGTGACTTTCGCTTCATCTTCAAAAGTTGACGGTTGGCGACCCGCTCCTTCTTCAAAGTTGACGGTTGACAACTTCACTTCATCTTCAAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAGTTAACAGTTGGCAGTCCCGCTTCTTCTTCGAAAGTTGACGGTTGACAACTTCACTTCATATTTAAAAGTTGACGGTTGAAGTCTTCGCTTTAGAACATCTGCAAAGATGAACGACTTTAATGTTGACTTTATCTTGAAAGTATCTAGACTGGAATATGCATCTTAGCTGCAAGCTAAAAAAAATGTTTGATATCAAACCACAAAAAAAAAAAAAGAAGAAAGACAATAAGGGTGTTGTTAAAAAAATGGTGACCACCCATGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGAGGTGAAGTCACTGCAAATGAAGTTCATGACGACTGTTGTAGGCGAGTCTGGTGACCACCCCTACAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAAGAGGTGAAGTCACCGCAAATGAAGTTGACGACGACCGTTGTAGGCGAGACGGGTGACCACCCCTGCAAACTACTCAAATCACCCAATAAAATGAGGACTGGTCTAGCAGAAGTGCATCACTGTGGACAAATCTGGTGACCACTCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACCGGTCTAGTAGGAGTGCATCACTGAAGGCAAGTTTGGTGACTTCCCCTGCAGGCTACTCAGATCACCCAATAAAATAGGGACTAGTCTAGCAGGAGTGCATCACTGTAGGAAAATCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATAGGGACGGGTCTAGCAGGAGTGCATCACTGTAAGAAAATCTGGTGGCTACCTCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGGTGACTACCCCTGCAGGCTACTTAGATCACCCGATAAAATAGGGGATTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGAAAAGATTGCTGCAAGATGCTTACACATGCAAGTAAGAAATAAACAAATTGCAATAATATATGTGAAAAAAAAAGTAGGAGACAAAATCTATAAGCACAATCAAATTAGCAATATGTGCACATGCAATATAAACATCAATGGAATATATGCATATTAAAAAAACAAAAAAGAAAAAAAGAGTTTGAATATGTATATACCTTCCAAGTGGTGGACAAAGATGGATCCAAGGAGATTGGCAACCAAATTTGTTAATTTCGAATCCTACACAGAAAGGAGGGTAATCAAAACAAATCATTGGCAAAGTGAGTAACAAAATATATATAAACTGCATGATGGACGTGTCTCCATCTTAAAAAAAAAATTAGCAAAGCAAGTGTAGTGCGAGAAAACAAGTTTAAAAAAAAGGAATTGACATGAAGCAGCAGCAAAAAAAAAAAAAAAAAAAAATGAAGCGGCGACAGAAGAAAAAAAAGCGTCTATCATTCGCCTCCATCAGCGACAACTTTCAGATCAACGATTTATTACTCTCCACCGTCAGTTGGATCTGAAACATCCAAATTCACGATGACTAAACAACCATTTAGGCCTCGTGAGAAACTTATTGAAAGGCAAAAATATTTGCAGAGCATCCACAAGCACACATGTCTTAAAAGGGCAATGGATAAAGTCATCTTTGTGGCCATTCCAATTGCTGCTTCATCATTGTATCTTATAGGATGGAGAATTTATAACATGTCACATGGGATTGGGAAGAAAGAATGA

mRNA sequence

ATGTTGGTGGTTGAAGCTTTCATTGTCGTTTCATCTTTAAAAGTTGACAGTTGGAAACCTCGCTTCATCTTCAAAGGTTGGTGGTGGAAGGACTCTCTCTTGCTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGCGAGTCTGGTGACCACCCCTACAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAAGAGGTGAAGTCACCGCAAATGAAGTTGACGACGACCGTTGTAGGCGAGACGGGTGACCACCCCTGCAAACTACTCAAATCACCCAATAAAATGAGGACTGGTCTAGCAGAAGTGCATCACTGTGGACAAATCTGGCTACTCAGATCACCCAATAAAATAGGGACGGGTCTAGCAGGAGTGCATCACTGCAAATCTGGTGACTACCCCTGCAGGCTACTTAGATCACCCGATAAAATAGGGGATTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGAAAAGATTGCTGCAAGATGCTTACACATGCAATTGGATCTGAAACATCCAAATTCACGATGACTAAACAACCATTTAGGCCTCGTGAGAAACTTATTGAAAGGCAAAAATATTTGCAGAGCATCCACAAGCACACATGTCTTAAAAGGGCAATGGATAAAGTCATCTTTGTGGCCATTCCAATTGCTGCTTCATCATTGTATCTTATAGGATGGAGAATTTATAACATGTCACATGGGATTGGGAAGAAAGAATGA

Coding sequence (CDS)

ATGTTGGTGGTTGAAGCTTTCATTGTCGTTTCATCTTTAAAAGTTGACAGTTGGAAACCTCGCTTCATCTTCAAAGGTTGGTGGTGGAAGGACTCTCTCTTGCTCCATCTTCAAAGATTGACAGTCAACAGCTTTGTTTCATCTTCAAAGGCGAGTCTGGTGACCACCCCTACAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAAGAGGTGAAGTCACCGCAAATGAAGTTGACGACGACCGTTGTAGGCGAGACGGGTGACCACCCCTGCAAACTACTCAAATCACCCAATAAAATGAGGACTGGTCTAGCAGAAGTGCATCACTGTGGACAAATCTGGCTACTCAGATCACCCAATAAAATAGGGACGGGTCTAGCAGGAGTGCATCACTGCAAATCTGGTGACTACCCCTGCAGGCTACTTAGATCACCCGATAAAATAGGGGATTGGTCTAGCAGGAGTGAAATCACTGCAAGTGAATTTGGAAAAGATTGCTGCAAGATGCTTACACATGCAATTGGATCTGAAACATCCAAATTCACGATGACTAAACAACCATTTAGGCCTCGTGAGAAACTTATTGAAAGGCAAAAATATTTGCAGAGCATCCACAAGCACACATGTCTTAAAAGGGCAATGGATAAAGTCATCTTTGTGGCCATTCCAATTGCTGCTTCATCATTGTATCTTATAGGATGGAGAATTTATAACATGTCACATGGGATTGGGAAGAAAGAATGA

Protein sequence

MLVVEAFIVVSSLKVDSWKPRFIFKGWWWKDSLLLHLQRLTVNSFVSSSKASLVTTPTGYYSHQSDWSRQEVKSPQMKLTTTVVGETGDHPCKLLKSPNKMRTGLAEVHHCGQIWLLRSPNKIGTGLAGVHHCKSGDYPCRLLRSPDKIGDWSSRSEITASEFGKDCCKMLTHAIGSETSKFTMTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPIAASSLYLIGWRIYNMSHGIGKKE

Homology

[Close]

BLAST of Lag0015618 vs. NCBI nr
Match: XP_022140780.1 (uncharacterized protein LOC111011360 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-19
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 178 ETSKFTMTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGW 237
           +T   TMT++PFRPREKLIERQKY QSIHKHT LK  +DKV  VAIPI  AASSLYLIG 
Sbjct: 3   DTPNSTMTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGR 62

Query: 238 RIYNMSHGIGKKE 249
            IYNMSHGIGKKE
Sbjct: 63  GIYNMSHGIGKKE 75

[Close]

BLAST of Lag0015618 vs. NCBI nr
Match: KAG6606001.1 (hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-19
Identity = 56/71 (78.87%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 180 SKFTMTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRI 239
           S   MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  I
Sbjct: 51  SNLNMTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGI 110

Query: 240 YNMSHGIGKKE 249
           YNMSHGIGKKE
Sbjct: 111 YNMSHGIGKKE 121

[Close]

BLAST of Lag0015618 vs. NCBI nr
Match: KAG7035952.1 (hypothetical protein SDJN02_02752, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-19
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 179 TSKFTMTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIP--IAASSLYLIGWR 238
           +SKF M+++PFRPREKLIE+QKY QSIHKHT LK  MDKV  VAIP  +AASSLYLIG  
Sbjct: 35  SSKFKMSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRG 94

Query: 239 IYNMSHGIGKKE 249
           IYNMSHGIGKKE
Sbjct: 95  IYNMSHGIGKKE 106

[Close]

BLAST of Lag0015618 vs. NCBI nr
Match: XP_022957674.1 (uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_022996284.1 uncharacterized protein LOC111491558 isoform X1 [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  IYNMS
Sbjct: 3   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 244 HGIGKKE 249
           HGIGKKE
Sbjct: 63  HGIGKKE 69

[Close]

BLAST of Lag0015618 vs. NCBI nr
Match: XP_022957675.1 (uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_022996285.1 uncharacterized protein LOC111491558 isoform X2 [Cucurbita maxima] >KAG7035951.1 hypothetical protein SDJN02_02751, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  IYNMS
Sbjct: 1   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 244 HGIGKKE 249
           HGIGKKE
Sbjct: 61  HGIGKKE 67

[Close]

BLAST of Lag0015618 vs. ExPASy TrEMBL
Match: A0A6J1CG46 (uncharacterized protein LOC111011360 OS=Momordica charantia OX=3673 GN=LOC111011360 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 178 ETSKFTMTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGW 237
           +T   TMT++PFRPREKLIERQKY QSIHKHT LK  +DKV  VAIPI  AASSLYLIG 
Sbjct: 3   DTPNSTMTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGR 62

Query: 238 RIYNMSHGIGKKE 249
            IYNMSHGIGKKE
Sbjct: 63  GIYNMSHGIGKKE 75

[Close]

BLAST of Lag0015618 vs. ExPASy TrEMBL
Match: A0A6J1K6C6 (uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-19
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  IYNMS
Sbjct: 1   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 244 HGIGKKE 249
           HGIGKKE
Sbjct: 61  HGIGKKE 67

[Close]

BLAST of Lag0015618 vs. ExPASy TrEMBL
Match: A0A6J1K8A8 (uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-19
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  IYNMS
Sbjct: 3   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 244 HGIGKKE 249
           HGIGKKE
Sbjct: 63  HGIGKKE 69

[Close]

BLAST of Lag0015618 vs. ExPASy TrEMBL
Match: A0A6J1H2N1 (uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-19
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  IYNMS
Sbjct: 3   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 244 HGIGKKE 249
           HGIGKKE
Sbjct: 63  HGIGKKE 69

[Close]

BLAST of Lag0015618 vs. ExPASy TrEMBL
Match: A0A6J1H176 (uncharacterized protein LOC111459140 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-19
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           MT+QPFRPREKLIERQKY QSIHKHT LK  MDK+  VAIPI  AASSLYLIG  IYNMS
Sbjct: 1   MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 244 HGIGKKE 249
           HGIGKKE
Sbjct: 61  HGIGKKE 67

[Close]

BLAST of Lag0015618 vs. TAIR 10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-17
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIPI--AASSLYLIGWRIYNMS 243
           +T+ PFRPREKL+E+Q+  QSI +HT LK  MDK+  VAIPI  AASSLY+IG  IYNMS
Sbjct: 2   LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 244 HGIGKKE 249
           +GIGKKE
Sbjct: 62  NGIGKKE 68

[Close]

BLAST of Lag0015618 vs. TAIR 10
Match: AT4G21105.2 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 184 MTKQPFRPREKLIERQKYLQSIHKHTCLKRAMDKVIFVAIP 225
           +T+ PFRPREKL+E+Q+  QSI +HT LK  MDK+  + IP
Sbjct: 2   LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42

The following BLAST results are available for this feature:

BLAST of Lag0015618 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140780.1	6.6e-19	76.71	uncharacterized protein LOC111011360 [Momordica charantia]	[more]
KAG6606001.1	6.6e-19	78.87	hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035952.1	6.6e-19	76.39	hypothetical protein SDJN02_02752, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022957674.1	1.5e-18	82.09	uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_0229962...	[more]
XP_022957675.1	1.5e-18	82.09	uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_0229962...	[more]

BLAST of Lag0015618 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0015618 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG46	3.2e-19	76.71	uncharacterized protein LOC111011360 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1K6C6	7.1e-19	82.09	uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K8A8	7.1e-19	82.09	uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H2N1	7.1e-19	82.09	uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H176	7.1e-19	82.09	uncharacterized protein LOC111459140 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lag0015618 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21105.1	1.7e-17	67.16	cytochrome-c oxidases;electron carriers	[more]
AT4G21105.2	1.8e-06	56.10	cytochrome-c oxidases;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 193..243 e-value: 5.6E-6 score: 26.6
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 173..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015618.1	Lag0015618.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane