Lag0015615 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015615
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RING-type domain-containing protein
Location	chr12: 17712837 .. 17715437 (-)
RNA-Seq Expression	Lag0015615
Synteny	Lag0015615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTGGAAAAAAATTGAAATCGAATGGGTCAAAGATCGTAGGAATTAGAACTTCATTGAAGGAAAACGAACCAGCAATTCTCAAATCGAGGTATATATGACCTTTAGTATAAATTTTACTGTGTGGAAAACTACTGCTGAGTTATTTTGCCTACAATTCTATCAAAACGGTGTTTCTTACATCTAGAGTGCTTCATCTCTTTGTTGAAGATTACAGTCTTTGACGTTTAATGTTGTTCTATTTGGTGAATGAACATCGCACGATATTGATGTATTAAAAGGAAAGTGAACATCATATAAGAGAGTTACTAAGATTGAAGTCTTTAGCCTATGAAGTGAGTTTGTGGTTTAACAATACCCTAGTAGCATTCCATATGCTTCCTTTCTTAAAATAAATACATTACTTAACAACCTATTTTATTTAATCCAGCAAAAACTTATCCTAGCAAATAGTTATAAATCTACACAAATGAAATTGTGGAAACTATGTTTCAAAACCTGGGGCAATGTTAGTTGCCAATACTGAAGTATTAGATAAATTGTTTGTAGGACAAGGTAAAGGCATCTGGATTAAAAAAAAAAGTGGGTTAGATTGGTAAATGCCGTTTTTACCTCATTAAGTTAAACCATAAAATTGTAAGACTACTTTTTGGTGTTACGGAGATTTGTTTCCTTGGATATATCATCAATGTCACTTAATTAGTGCATAGTGAGAGTGTTTTAATCCCAAGTTCTCCATCTATGTTTATTGGAAGTGTCTAGTCTCGAGGCCTCTATTTTCTTTTTGCAATCTATGTACTACTAAAAATTTGTGTTCCCTTTTGTGTGTTCGCATACCAATAGTGTTGCCATTTGTATTGCAGGGTATCTGAATTGGATCTTGATGAAGAAGAGGTTCTAAAGTTTTCTTCATTGGGGAGTGGAGCAAATAATGACATTCTAAGGAAATCCTTGGTTCTGTGTAATAGGTCAGTTATTTCAATGATACCTATGGAAATTTGAAATAATCTTAGAATGTAACTTTTGGAATTTGGTTGTGTGATTTGACCTTATATTGAAACTTTGAGCAACTTTACAAATCAAAAGATGCGTTGTTCAAGTATGTACAAATAATTCTTGAAGATTACACCAATTATGATAATATGTATGTATTTCCTTTGACTAATTCTTCGTTTTAAGTGTTCTTTTAAAAAGTCTCAACTTTTCCATAGGAGTTATAAAGAACTGATGACAAAGTGCAATCTTCTTAGAAGGGGAGAGACTCGCTCTTGTAAGAAACTTGAGAAGGCAAAAGAGAAAAGAAATAATCTGAAGGTGAGCTCATAACAAATAAAATCTCATTTGATGCATTTCATCCAATTTAATGTCTAATGATCATTATCAGGTAAGAGTCTAAGAACTAGAAAAAGCCATTGAAGATAAAGATAATGAACTTTTGCGAGGCTTGACAGTTTCAAGCATTCAAGGGGTTCAGGGTAATGTGTGTTGTAAATGTAACATGACAACTTTGCAGCTTTCTATTTATTTTGCAACATAGGTCATGTTTAGTATCTTCTTGATTAGGGTTGGGGTTTTACTTATTTAGATGACCATCTTTAACACAGGAAATTAGGACTACGAGAGTTTAGATTCACAAAAAATTTAGAGAAGTCCCTAAATAGTTTTAACAAAGCACTGAGTACTTCTTTATTTTCATCCTTACTCTGCATTTTTTACTGCGCATTTTGCTATTGAGGGTTTTATTTGTGTCTGAACTTATATTTTCTTGGGTATGAATAGGTGTATAAGTGTGCTGCTGATCGACGGTTGCTTTTTAGGACGATATTGTTATTGGAGCGTAAGAGATTGCTATTGAGGGAAACAAACCATGTTAGTTAATTGTGTAATATGTTGACTGGTTTAATCAAATAAGATTTTGCCTCACTTTAAGTTGCAAAAAAAAAAAAAAAAGTAAGTATTGTTATGTTGAATAAGATTTTGCCTCACTCTAAGTTGCGAAAAAAAGTATTGTTTTATTTTTATTGAGCATCACTTTGAATTATTAATTGTTCAAATGATTTATATTGGAATTGAAGGTCTTTGGCATAAGAAATCATAGGCTCTAAGTGACATTTGTTATACCATATTGATTCTCTCTCTCTTTGTAGAGTGAATCATTGGGTTGATATAATTTTTGTAGTAGGCTAATTGAGTATTCCTTCATTGATCTTTAAGTGGCAAAAAGAAGTTTTCAGTAGAATGTTTGAGCTAGGAATGACTATATATTTTTTGAGTTCTACCAACATGATATTAATTGGGGCGTGTCTTTAGTTGTTTGTCCTTCAAACTTTATTGCGAGATCCTTGCAGGTCCATTCACTTGCTTTATGAACCTTTCTAGAGGAAGAACGTTTTGTGAAGAAGTGAAAAGACACTACAAGTCTTCTCCCTACATTTTTACTTCCCTCCACACCCACTGACACACTCGAGAATGTTATATATGCTCCCTTTTGCCTTTTGGAATCAAACCAGAAAGGACTTGAAGAATCGGGTTCATTTCATTGGATTGGTTTAATTACTTATTTATCAGGTGCAGTAGTGGCAATATGGATATACTAG

mRNA sequence

ATGGGTATTGGAAAAAAATTGAAATCGAATGGGTCAAAGATCGTAGGAATTAGAACTTCATTGAAGGAAAACGAACCAGCAATTCTCAAATCGAGGGTATCTGAATTGGATCTTGATGAAGAAGAGGTTCTAAAGTTTTCTTCATTGGGGAGTGGAGCAAATAATGACATTCTAAGGAAATCCTTGGTTCTGTGTAATAGGAGTTATAAAGAACTGATGACAAAGTGCAATCTTCTTAGAAGGGGAGAGACTCGCTCTTGTAAGAAACTTGAGAAGGCAAAAGAGAAAAGAAATAATCTGAAGGTGTATAAGTGTGCTGCTGATCGACGGTTGCTTTTTAGGACGATATTGTTATTGGAGCGTGCAGTAGTGGCAATATGGATATACTAG

Coding sequence (CDS)

ATGGGTATTGGAAAAAAATTGAAATCGAATGGGTCAAAGATCGTAGGAATTAGAACTTCATTGAAGGAAAACGAACCAGCAATTCTCAAATCGAGGGTATCTGAATTGGATCTTGATGAAGAAGAGGTTCTAAAGTTTTCTTCATTGGGGAGTGGAGCAAATAATGACATTCTAAGGAAATCCTTGGTTCTGTGTAATAGGAGTTATAAAGAACTGATGACAAAGTGCAATCTTCTTAGAAGGGGAGAGACTCGCTCTTGTAAGAAACTTGAGAAGGCAAAAGAGAAAAGAAATAATCTGAAGGTGTATAAGTGTGCTGCTGATCGACGGTTGCTTTTTAGGACGATATTGTTATTGGAGCGTGCAGTAGTGGCAATATGGATATACTAG

Protein sequence

MGIGKKLKSNGSKIVGIRTSLKENEPAILKSRVSELDLDEEEVLKFSSLGSGANNDILRKSLVLCNRSYKELMTKCNLLRRGETRSCKKLEKAKEKRNNLKVYKCAADRRLLFRTILLLERAVVAIWIY

Homology

[Close]

BLAST of Lag0015615 vs. NCBI nr
Match: XP_004138487.2 (E3 ubiquitin-protein ligase TRAIP isoform X1 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-19
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 33  VSELDLDEEEVLKFSSLGSGANN----DILRKSLVLCNRSYKELMTKCNLLRRGETRSCK 92
           +SE+DLDEEEVLK SSLGSGA+N    DILRKSLVL NRSYKELM KCNLL RGE RSCK
Sbjct: 194 ISEVDLDEEEVLKLSSLGSGADNKDTIDILRKSLVLRNRSYKELMAKCNLLGRGEARSCK 253

Query: 93  KLEKAKEKRNNLKV 103
           KLEKA EK N LKV
Sbjct: 254 KLEKANEKINKLKV 267

[Close]

BLAST of Lag0015615 vs. NCBI nr
Match: XP_031744064.1 (uncharacterized protein LOC101218841 isoform X2 [Cucumis sativus] >KGN45695.1 hypothetical protein Csa_005486 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-19
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 33  VSELDLDEEEVLKFSSLGSGANN----DILRKSLVLCNRSYKELMTKCNLLRRGETRSCK 92
           +SE+DLDEEEVLK SSLGSGA+N    DILRKSLVL NRSYKELM KCNLL RGE RSCK
Sbjct: 111 ISEVDLDEEEVLKLSSLGSGADNKDTIDILRKSLVLRNRSYKELMAKCNLLGRGEARSCK 170

Query: 93  KLEKAKEKRNNLKV 103
           KLEKA EK N LKV
Sbjct: 171 KLEKANEKINKLKV 184

[Close]

BLAST of Lag0015615 vs. NCBI nr
Match: XP_038906710.1 (uncharacterized protein LOC120092637 [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 59/74 (79.73%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 33  VSELDLDEEEVLKFSSLGSGANN----DILRKSLVLCNRSYKELMTKCNLLRRGETRSCK 92
           VSE+DLDEEEVLK SSLG GA+N    DILRKSLVL NRSYKELM KCNLL RGE RSCK
Sbjct: 194 VSEVDLDEEEVLKLSSLGGGADNKDAIDILRKSLVLRNRSYKELMAKCNLLGRGEARSCK 253

Query: 93  KLEKAKEKRNNLKV 103
           KLEKA EK N LKV
Sbjct: 254 KLEKANEKINKLKV 267

[Close]

BLAST of Lag0015615 vs. NCBI nr
Match: XP_022958832.1 (uncharacterized protein LOC111459984 isoform X2 [Cucurbita moschata] >XP_022958833.1 uncharacterized protein LOC111459984 isoform X2 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 59/74 (79.73%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 33  VSELDLDEEEVLKFSSLGSGANN----DILRKSLVLCNRSYKELMTKCNLLRRGETRSCK 92
           VSE+DLDEEEV K SSLGSGA+N    DILRKSLVL NRSYKELM KCNLL RGE R CK
Sbjct: 136 VSEVDLDEEEVRKLSSLGSGADNKDTIDILRKSLVLRNRSYKELMAKCNLLGRGEARYCK 195

Query: 93  KLEKAKEKRNNLKV 103
           KLEKAKEK N LKV
Sbjct: 196 KLEKAKEKINKLKV 209

[Close]

BLAST of Lag0015615 vs. NCBI nr
Match: KAG7013762.1 (hypothetical protein SDJN02_23929 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 59/74 (79.73%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 33  VSELDLDEEEVLKFSSLGSGANN----DILRKSLVLCNRSYKELMTKCNLLRRGETRSCK 92
           VSE+DLDEEEV K SSLGSGA+N    DILRKSLVL NRSYKELM KCNLL RGE R CK
Sbjct: 194 VSEVDLDEEEVRKLSSLGSGADNKDTIDILRKSLVLRNRSYKELMAKCNLLGRGEARYCK 253

Query: 93  KLEKAKEKRNNLKV 103
           KLEKAKEK N LKV
Sbjct: 254 KLEKAKEKINKLKV 267

The following BLAST results are available for this feature:

BLAST of Lag0015615 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138487.2	5.8e-19	79.73	E3 ubiquitin-protein ligase TRAIP isoform X1 [Cucumis sativus]	[more]
XP_031744064.1	5.8e-19	79.73	uncharacterized protein LOC101218841 isoform X2 [Cucumis sativus] >KGN45695.1 hy...	[more]
XP_038906710.1	1.3e-18	79.73	uncharacterized protein LOC120092637 [Benincasa hispida]	[more]
XP_022958832.1	2.9e-18	79.73	uncharacterized protein LOC111459984 isoform X2 [Cucurbita moschata] >XP_0229588...	[more]
KAG7013762.1	2.9e-18	79.73	hypothetical protein SDJN02_23929 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0015615 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47344	RING ZINC FINGER PROTEIN-RELATED	coord: 32..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015615.1	Lag0015615.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding