Lag0015593 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015593
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr12: 17156581 .. 17157413 (-)
RNA-Seq Expression	Lag0015593
Synteny	Lag0015593

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGAGACAATTCTTTTAAGGGACACCCCTCGGAGGATCCACATTCCCATCTTCGATCATTCTTGGAGATATGCAGGACGATAAAGATGAATGGAGTTCCAGCCGACGCGATAAGATTAAGGTTATTCCCATTTTCTCTTCAGGATAAGGCGAAATATTGGCTTGAATCAGTCGAGACGGGTAGTATCAGCACATGGGACGAGCTTGCCCAGGCATTCCTGACAAAATTTTTCCCGCCTGGAAAGACCACGAAGCTCCGGACTGAGATCAGAACATTCAGACAATTGGACGATGAGCAACTTTACGAGGCATGGGAGAGATATAAAGAAATGCTTAGGAGGTGCCCGCAGCATGGCTATCTAGATTGGCTCCAGGTGCAGTTATTTTACAATGGATTGTATCCTTCCACCAAGACGGTTCTAGACACATCAGCAGGTGGGACTTTTCTTTCCAAGACAGTGACAGAAGCCAATGATCTTTTAGAGGAAATGGTAGCGACTAGTTACCAGTGGCTGACTGAAAGGGGGACAGTTTCCAAAAAGGCTAGCATTTATGAAATTGATGAGTCAAGCTCTCTGAAACGCAGATGGCATCATTGACTAATGCTCTGAATAAGCTTACTTCATCTGAGGTGGTCAAATCTATCTCCACCTTGGCTGAAGGATATTCAAAGAAGGAAAATCAAGATGTCGAAGAAGTTCAGTATGTGGGAAACAAAGCATTCAATCAAGGAGTACCAAACTTCTACCATTCCAGTCTGCGCAATCATGAGAACTTTTTGTACTCCAACACCAAGAACGTATTGCAGCCACCGCCAGGATTTGCGTGA

mRNA sequence

ATGGCACGAGACAATTCTTTTAAGGGACACCCCTCGGAGGATCCACATTCCCATCTTCGATCATTCTTGGAGATATGCAGGACGATAAAGATGAATGGAGTTCCAGCCGACGCGATAAGATTAAGGTTATTCCCATTTTCTCTTCAGGATAAGGCGAAATATTGGCTTGAATCAGTCGAGACGGGTAGTATCAGCACATGGGACGAGCTTGCCCAGGCATTCCTGACAAAATTTTTCCCGCCTGGAAAGACCACGAAGCTCCGGACTGAGATCAGAACATTCAGACAATTGGACGATGAGCAACTTTACGAGGCATGGGAGAGATATAAAGAAATGCTTAGGAGGTGCCCGCAGCATGGCTATCTAGATTGGCTCCAGGTGCAGTTATTTTACAATGGATTGTATCCTTCCACCAAGACGGTTCTAGACACATCAGCAGGTGGGACTTTTCTTTCCAAGACAGTGACAGAAGCCAATGATCTTTTAGAGGAAATGATGGCATCATTGACTAATGCTCTGAATAAGCTTACTTCATCTGAGGTGGTCAAATCTATCTCCACCTTGGCTGAAGGATATTCAAAGAAGGAAAATCAAGATGTCGAAGAAGTTCAGTATGTGGGAAACAAAGCATTCAATCAAGGAGTACCAAACTTCTACCATTCCAGTCTGCGCAATCATGAGAACTTTTTGTACTCCAACACCAAGAACGTATTGCAGCCACCGCCAGGATTTGCGTGA

Coding sequence (CDS)

ATGGCACGAGACAATTCTTTTAAGGGACACCCCTCGGAGGATCCACATTCCCATCTTCGATCATTCTTGGAGATATGCAGGACGATAAAGATGAATGGAGTTCCAGCCGACGCGATAAGATTAAGGTTATTCCCATTTTCTCTTCAGGATAAGGCGAAATATTGGCTTGAATCAGTCGAGACGGGTAGTATCAGCACATGGGACGAGCTTGCCCAGGCATTCCTGACAAAATTTTTCCCGCCTGGAAAGACCACGAAGCTCCGGACTGAGATCAGAACATTCAGACAATTGGACGATGAGCAACTTTACGAGGCATGGGAGAGATATAAAGAAATGCTTAGGAGGTGCCCGCAGCATGGCTATCTAGATTGGCTCCAGGTGCAGTTATTTTACAATGGATTGTATCCTTCCACCAAGACGGTTCTAGACACATCAGCAGGTGGGACTTTTCTTTCCAAGACAGTGACAGAAGCCAATGATCTTTTAGAGGAAATGATGGCATCATTGACTAATGCTCTGAATAAGCTTACTTCATCTGAGGTGGTCAAATCTATCTCCACCTTGGCTGAAGGATATTCAAAGAAGGAAAATCAAGATGTCGAAGAAGTTCAGTATGTGGGAAACAAAGCATTCAATCAAGGAGTACCAAACTTCTACCATTCCAGTCTGCGCAATCATGAGAACTTTTTGTACTCCAACACCAAGAACGTATTGCAGCCACCGCCAGGATTTGCGTGA

Protein sequence

MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVETGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHGYLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEMMASLTNALNKLTSSEVVKSISTLAEGYSKKENQDVEEVQYVGNKAFNQGVPNFYHSSLRNHENFLYSNTKNVLQPPPGFA

Homology

[Close]

BLAST of Lag0015593 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 284.3 bits (726), Expect = 1.0e-72
Identity = 154/287 (53.66%), Postives = 191/287 (66.55%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           MAR+ +F+G  +EDPH HLRSFLEIC T+KMNGV  DAI+LRLFPFSLQD+AK WLE++ 
Sbjct: 91  MARELAFRGRTNEDPHKHLRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKDWLETIP 150

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
             SI+TW+ LAQAFL K+FPP K+ +LRTEI TFRQL+DEQLYEAWERYK++LRRCPQHG
Sbjct: 151 PDSITTWEILAQAFLNKYFPPAKSQRLRTEIGTFRQLEDEQLYEAWERYKDLLRRCPQHG 210

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEM--------------- 180
           Y DWLQ+QLFYNGL  STK++LD +AGG+  SK   EA  +LE++               
Sbjct: 211 YPDWLQIQLFYNGLASSTKSILDATAGGSIFSKNAQEAYTILEDLATTSYNWPCERASPN 270

Query: 181 -------------------MASLTNALNKLTSSEVVK----SISTLAEGYSKK-ENQDVE 240
                              MASLTNAL+KLT+    +    SI++LA   S+   + D E
Sbjct: 271 IPKAAGLYEVDEVNSLKAQMASLTNALSKLTAGGQAQTNPPSIASLAALASEMGVHGDNE 330

Query: 241 EVQYVGNKAF----NQGVPNFYHSSLRNHENFLYSNTKNVLQPPPGF 245
              YV    +    +Q +P  YH +LRNHENF Y+N KNVLQ P GF
Sbjct: 331 TANYVDRGHYRNYQHQQLPTHYHPNLRNHENFSYANNKNVLQAPQGF 377

[Close]

BLAST of Lag0015593 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 268.9 bits (686), Expect = 4.4e-68
Identity = 137/281 (48.75%), Postives = 179/281 (63.70%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M +   F G P +DP+ HL  FLEIC  +KMNGV  D IRLRLFPFSL+DKA+ WL+S++
Sbjct: 47  MVQQAQFSGSPLDDPNIHLAMFLEICDIVKMNGVTEDTIRLRLFPFSLRDKARGWLQSLQ 106

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
            GSI++W ++A+ FL KFFPP KT +LR+EI  FRQ D E LYEAWERYK+++R CPQHG
Sbjct: 107 PGSITSWQDMAEKFLAKFFPPAKTAQLRSEIGQFRQNDFESLYEAWERYKDLIRCCPQHG 166

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEM--------------- 180
            LDWLQVQ+FYNGL   T+T++D ++GGT +SKT   A  LLEEM               
Sbjct: 167 LLDWLQVQMFYNGLNGQTRTIVDAASGGTLMSKTAEGATSLLEEMASNKYQWPTERTMAK 226

Query: 181 -----------------MASLTNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQYV 240
                            +ASL++ ++ LT+  + +S+  +A         +   E VQY+
Sbjct: 227 KVAGIHELESFAALAAQVASLSHQVSALTTQRIPQSVEYVAASSMTVPMNEASQEHVQYI 286

Query: 241 GNKAFN---QGVPNFYHSSLRNHENFLYSNTKNVLQPPPGF 245
            N+ +N     +PN+YH  LRNHENF Y NTKNVLQPPPGF
Sbjct: 287 NNRNYNYHGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF 327

[Close]

BLAST of Lag0015593 vs. NCBI nr
Match: XP_030970157.1 (uncharacterized protein LOC115990464 [Quercus lobata])

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-67
Identity = 136/281 (48.40%), Postives = 179/281 (63.70%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M     F G P  DP+ HL  FLEIC T+KMNGV  D IRLRLFPFSL+DKA+ WL+S++
Sbjct: 47  MVPQAQFGGSPLNDPNIHLAMFLEICNTVKMNGVTEDTIRLRLFPFSLRDKARGWLQSLQ 106

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
            GSI++W ++A+ FL KFFPP KT +LR+EI  FRQ D E LYEAWERYK+++RRCPQHG
Sbjct: 107 LGSITSWQDMAEKFLAKFFPPAKTAQLRSEIGQFRQNDFESLYEAWERYKDLIRRCPQHG 166

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEM--------------- 180
           + +WLQ+Q+FYNGL   T+T++D ++ GT +SKTV     LLEEM               
Sbjct: 167 FSNWLQIQMFYNGLNGQTQTIVDAASSGTLMSKTVKGVTSLLEEMVLNNYQWPIERTMAK 226

Query: 181 -----------------MASLTNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQYV 240
                            +ASL++ ++ LT+  + +S   +A         +V  E+VQY+
Sbjct: 227 KVAGIHELDPFAALSAQVASLSHQVSTLTTQRIPQSAEYVAVSSMTVPMNEVSQEQVQYI 286

Query: 241 GNKAFN---QGVPNFYHSSLRNHENFLYSNTKNVLQPPPGF 245
            N+ +N     +PN+YH  LRNHENF Y NTKNVLQPPPGF
Sbjct: 287 NNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF 327

[Close]

BLAST of Lag0015593 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-67
Identity = 137/281 (48.75%), Postives = 178/281 (63.35%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M +   F G P +DP+ HL  FLEIC TIKMNGV  D IRLRLFPFSL+DKA+ WL+S++
Sbjct: 47  MVQQAQFSGSPLDDPNIHLAMFLEICDTIKMNGVTEDTIRLRLFPFSLRDKARGWLQSLQ 106

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
            GSI++W ++A+ FL KFFPP KT +LR+EI  FRQ D E LYEAWERYK+++R CPQHG
Sbjct: 107 PGSITSWQDMAEKFLAKFFPPAKTAQLRSEIGQFRQNDFESLYEAWERYKDLIRCCPQHG 166

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEM--------------- 180
             DWLQVQ+FYNGL   T+T++D ++GGT +SKT   A  LLEEM               
Sbjct: 167 LPDWLQVQMFYNGLNGQTRTIVDAASGGTLMSKTAEGATSLLEEMASNNYQWPTERTMAK 226

Query: 181 -----------------MASLTNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQYV 240
                            +ASL++ ++ LT+  + +    +A         +   E+VQY+
Sbjct: 227 KVAGIHELEPFAALSAQVASLSHQVSALTTQRIPQGAEYVAASSMTVPMNEASQEQVQYI 286

Query: 241 GNKAFN---QGVPNFYHSSLRNHENFLYSNTKNVLQPPPGF 245
            N+ +N     +PN+YH  LRNHENF Y NTKNVLQPPPGF
Sbjct: 287 NNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF 327

[Close]

BLAST of Lag0015593 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 266.2 bits (679), Expect = 2.9e-67
Identity = 136/281 (48.40%), Postives = 179/281 (63.70%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M +   F G P +DP+ HL  FLEIC T+KMNGV  D IRLRLFPFSL+DKA+ WL+S++
Sbjct: 47  MVQQAQFSGSPLDDPNIHLAMFLEICDTVKMNGVTEDTIRLRLFPFSLRDKARGWLQSLQ 106

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
            GSI++W ++A+ FL KFFPP KT +LR+EI  FRQ D E LYEAWERYK+++R CPQHG
Sbjct: 107 PGSITSWQDMAEKFLAKFFPPAKTAQLRSEIGQFRQNDFESLYEAWERYKDLIRCCPQHG 166

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEM--------------- 180
             DWLQVQ+FYNGL   T+T++D ++GGT +SKT   A  LLEEM               
Sbjct: 167 LPDWLQVQMFYNGLNGQTRTIVDAASGGTLMSKTAEGATSLLEEMASNNYQWPTERTMAK 226

Query: 181 -----------------MASLTNALNKLTSSEVVKSISTLAEGYSKKENQDV--EEVQYV 240
                            +ASL++ ++ L++  + +S   +A         +   E+VQY+
Sbjct: 227 KVAGIHELEPFAALSAQVASLSHQVSALSTQRIPQSAEYVAASSMTVPMNEASQEQVQYI 286

Query: 241 GNKAFN---QGVPNFYHSSLRNHENFLYSNTKNVLQPPPGF 245
            N+ +N     +PN+YH  LRNHENF Y NTKNVLQPPPGF
Sbjct: 287 NNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVLQPPPGF 327

[Close]

BLAST of Lag0015593 vs. ExPASy TrEMBL
Match: A0A2I4G4Q3 (uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 130/285 (45.61%), Postives = 180/285 (63.16%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M +   F G P +DP+ HL  FLEIC T+K+NGV  D IRLRLFPFSL+D+A+ WL+S++
Sbjct: 1   MVQQAQFNGSPLDDPNIHLTMFLEICDTVKINGVTEDTIRLRLFPFSLRDRARGWLQSLQ 60

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
             SI++W ++A+ F  KFFPP KTT+LR+EI  F+Q D E LYEAWE YK+++RRCPQHG
Sbjct: 61  PRSITSWQDMAEKFHAKFFPPAKTTQLRSEIGQFKQNDFESLYEAWEIYKDLIRRCPQHG 120

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEM--------------- 180
             DWLQVQ+FYNGL   T+T++D ++GGT + KT+  A  LLEEM               
Sbjct: 121 LPDWLQVQMFYNGLNGHTRTIVDDTSGGTLMLKTIEGATYLLEEMASNNYQWPIERTMAK 180

Query: 181 -----------------MASLTNALNKLTSSEVVKS----ISTLAEGYSKKENQDVEEVQ 240
                            +A+L++ ++ LT+  + +S    ++T     S + +Q  E+VQ
Sbjct: 181 KVARIHELEPLAALSAQVATLSHQISALTTQRIPQSAEYVVATSMTVLSNEVSQ--EQVQ 240

Query: 241 YVGNKAFN---QGVPNFYHSSLRNHENFLYSNTKNVL--QPPPGF 245
           Y+ N+ +N     +PN+YH   +NHEN  Y NTKNVL  QPPPGF
Sbjct: 241 YINNRNYNYCGNPMPNYYHPGFQNHENLSYENTKNVLQPQPPPGF 283

[Close]

BLAST of Lag0015593 vs. ExPASy TrEMBL
Match: A0A803PT47 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.2e-60
Identity = 129/282 (45.74%), Postives = 167/282 (59.22%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M + N F    +EDP+ HL  FLE+C  +KMNGV  DAIRLRLFP SL+D+ + WL+S++
Sbjct: 39  MVQHNQFGRLATEDPNIHLAIFLEVCAIVKMNGVTDDAIRLRLFPSSLRDRVRKWLQSMQ 98

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
             SISTWDE+A+ F+ KFFPP K+ +LR+EI  FR LD E  YEAWER K++LR  PQHG
Sbjct: 99  PCSISTWDEMARKFMVKFFPPSKSAQLRSEIGQFRHLDSEPFYEAWERSKDLLRHYPQHG 158

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEMMASLTNALN------ 180
           Y  W+QV +FYNGL   T+T++D + GG  LSK +TEA +LLEEM  +  N  N      
Sbjct: 159 YESWMQVSIFYNGLNGPTRTLIDAAVGGALLSKHITEAINLLEEMATNSYNWPNERNTHK 218

Query: 181 KLTSSEVVKSISTLAEGYSKKENQD---------------------------VEEVQYVG 240
           KL     V  ++ +A   S   NQ+                           +E+ QY+ 
Sbjct: 219 KLAGLHEVDPMTNIAAQISALSNQEAALVNHKNTSTVENVVAASTSQGPEMSIEQAQYMA 278

Query: 241 NKAFNQG-----VPNFYHSSLRNHENFLYSNTKNVLQPPPGF 245
            K +N       +PN+YH  LRNHEN  Y NTKNVLQ P GF
Sbjct: 279 YKTYNNNYRGNPMPNYYHPGLRNHENLSYGNTKNVLQLPSGF 320

[Close]

BLAST of Lag0015593 vs. ExPASy TrEMBL
Match: A0A6J0ZYV0 (uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC110413413 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 137/280 (48.93%), Postives = 166/280 (59.29%), Query Frame = 0


Query: 7   FKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVETGSIST 66
           F G PS+DP+SHL +FLEIC T K NGV  DAIRLRLFPFSL+DKAK WL S+  GSI+T
Sbjct: 100 FSGLPSDDPNSHLVNFLEICDTFKYNGVTDDAIRLRLFPFSLRDKAKSWLNSLPNGSITT 159

Query: 67  WDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHGYLDWLQ 126
           W++LAQ FL KFFPP KT K+R +I +F Q D E LYEAWER+KE+LRRCP HG  DWLQ
Sbjct: 160 WEDLAQKFLAKFFPPAKTAKMRNDITSFIQFDGESLYEAWERFKELLRRCPHHGIPDWLQ 219

Query: 127 VQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEMM------------------AS 186
           VQ FYNGL  S KT++D +AGG  +SK   +A +LLEEM                   A 
Sbjct: 220 VQTFYNGLVGSIKTIIDAAAGGALMSKNAVDAYNLLEEMASNNYQWPSERSGSRKAVGAY 279

Query: 187 LTNALNKLTS--SEVVKSISTLAE-------------GYSKKENQ---DVEEVQYVGNKA 245
             +AL  LT+  + + K + TL               G S   +Q   + E VQ+VGN  
Sbjct: 280 EIDALGTLTTQVAALSKKLDTLGVHAVQNSLVVCEMCGDSHSYDQCPYNSESVQFVGNFN 339

[Close]

BLAST of Lag0015593 vs. ExPASy TrEMBL
Match: A0A6J0ZX64 (LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 137/280 (48.93%), Postives = 166/280 (59.29%), Query Frame = 0


Query: 7   FKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVETGSIST 66
           F G PS+DP+SHL +FLEIC T K NGV  DAIRLRLFPFSL+DKAK WL S+  GSI+T
Sbjct: 100 FSGLPSDDPNSHLVNFLEICDTFKYNGVTDDAIRLRLFPFSLRDKAKSWLNSLPNGSITT 159

Query: 67  WDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHGYLDWLQ 126
           W++LAQ FL KFFPP KT K+R +I +F Q D E LYEAWER+KE+LRRCP HG  DWLQ
Sbjct: 160 WEDLAQKFLAKFFPPAKTAKMRNDITSFIQFDGESLYEAWERFKELLRRCPHHGIPDWLQ 219

Query: 127 VQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEMM------------------AS 186
           VQ FYNGL  S KT++D +AGG  +SK   +A +LLEEM                   A 
Sbjct: 220 VQTFYNGLVGSIKTIIDAAAGGALMSKNAVDAYNLLEEMASNNYQWPSERSGSRKAVGAY 279

Query: 187 LTNALNKLTS--SEVVKSISTLAE-------------GYSKKENQ---DVEEVQYVGNKA 245
             +AL  LT+  + + K + TL               G S   +Q   + E VQ+VGN  
Sbjct: 280 EIDALGTLTTQVAALSKKLDTLGVHAVQNSLVVCEMCGDSHSYDQCPYNSESVQFVGNFN 339

[Close]

BLAST of Lag0015593 vs. ExPASy TrEMBL
Match: A0A6P6XAQ1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 127/286 (44.41%), Postives = 162/286 (56.64%), Query Frame = 0


Query: 1   MARDNSFKGHPSEDPHSHLRSFLEICRTIKMNGVPADAIRLRLFPFSLQDKAKYWLESVE 60
           M + + + G+ +EDP+SHL +FLEIC TIK NGV  DAI+LRLFPFSL+DKAK WL+S  
Sbjct: 45  MVQQSQYGGNATEDPNSHLSTFLEICDTIKFNGVSEDAIKLRLFPFSLRDKAKVWLQSHP 104

Query: 61  TGSISTWDELAQAFLTKFFPPGKTTKLRTEIRTFRQLDDEQLYEAWERYKEMLRRCPQHG 120
             + +TWDELA+AFL KFFPPGKT KLR +I +F Q + E LYEAWERY+E+ RRCP HG
Sbjct: 105 PNTFTTWDELAKAFLNKFFPPGKTAKLRMDITSFSQQEGETLYEAWERYRELQRRCPHHG 164

Query: 121 YLDWLQVQLFYNGLYPSTKTVLDTSAGGTFLSKTVTEANDLLEEMMASLTNALNK----- 180
             DWL VQ FYNGL   TKT +D +AGG  + KT  EA  L+EEM A+     N+     
Sbjct: 165 LPDWLVVQTFYNGLTYPTKTHVDAAAGGALMGKTAEEAQQLIEEMAANNYQWANERGNSR 224

Query: 181 ------------LTSSEVVKSISTLAEGYSKKENQDV--------------------EEV 240
                       + S+++   +  L        NQ V                    E+V
Sbjct: 225 RTAGMLEVDTLNMLSAKMDNVVKMLNRQVGSSSNQGVVVASCTICGGDHDDFMCSSSEQV 284

Query: 241 QYVGN---KAFNQGVPNFYHSSLRNHENFLYSNTKNVLQP--PPGF 245
           QY+ N      N    N Y+   RNH NF + +  N  +P  PPGF
Sbjct: 285 QYLNNYNRPPQNNPYSNTYNPGWRNHPNFGWKDQGNQQRPVNPPGF 330

The following BLAST results are available for this feature:

BLAST of Lag0015593 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833153.1	1.0e-72	53.66	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
XP_023929660.1	4.4e-68	48.75	uncharacterized protein LOC112040975 [Quercus suber]	[more]
XP_030970157.1	1.7e-67	48.40	uncharacterized protein LOC115990464 [Quercus lobata]	[more]
XP_023874613.1	2.2e-67	48.75	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_023903214.1	2.9e-67	48.40	uncharacterized protein LOC112015077 [Quercus suber]	[more]

BLAST of Lag0015593 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0015593 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4G4Q3	1.5e-61	45.61	uncharacterized protein LOC109004712 OS=Juglans regia OX=51240 GN=LOC109004712 P...	[more]
A0A803PT47	8.2e-60	45.74	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J0ZYV0	1.0e-57	48.93	uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A6J0ZX64	1.0e-57	48.93	LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica ...	[more]
A0A6P6XAQ1	1.4e-54	44.41	Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1	[more]

BLAST of Lag0015593 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 159..179
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 25..168
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 25..168
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 43..135 e-value: 2.9E-18 score: 65.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015593.1	Lag0015593.1	mRNA