Lag0015576 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015576
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr12: 16795973 .. 16796685 (+)
RNA-Seq ExpressionLag0015576
SyntenyLag0015576
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATTGATTGTGTTGGTTTCAATTTGTTCTTATGCAAATTTCAAAATGCTCAAGTTAAAAGTAAAATCATTGAGAATGGACCATGGTTTTTCGATAAAGCAATGCTCTTAATGGAGGAACCAAAAGCAGATAGCTGTGGCGAGGAAACGGATTTCAGGTATGTTTCCTTCTGGATTCATTTTCATAAACTCCATTTGCTTGTTTTTCTAGGAACACAACAAAGGAAATTGGCAGCTTATTAGGAAAAGTGGAACAAATTGACTTAGAGGATGAAAAAGAGCAACACTGGAGTCGATCGTTAATAATGAAGATACAAGTTGAAGTTTATTCGCCGTTAAAGCGAGGTATTTTCCTGAAATCAGAGAAAAGGGGGGTTGATAAATGGATCAAACTTACTTATGAAAAACTATCGGATTTCAGTTATGGATGTGGCTTGTTGGGGCATACGATTAAAGAATGTGAAGATGAATGTGGAACCAAAGAAGAATACCTTCCATATGGCCCCTGGCTTAGGGAACCAACGAAATTGGTGAATTATAATTATGTTCCACCAGATAGAGCTGATTTCTTTGGGAGGGGAAGAGGACGAGGAAGAGATGGTGGTCGAGGGAGCTGGAGGCAGGCTAGTTTTGAGGAAGGAGTTGCTGCTACACCGGGATTTTTATCAGACCCAGTAGGATACTACTGCCAGTTCTCAGCTGGAATCTAG

mRNA sequence

ATGTTGATTGATTGTGTTGGTTTCAATTTGTTCTTATGCAAATTTCAAAATGCTCAAGTTAAAAGTAAAATCATTGAGAATGGACCATGGTTTTTCGATAAAGCAATGCTCTTAATGGAGGAACCAAAAGCAGATAGCTGTGGCGAGGAAACGGATTTCAGGAACACAACAAAGGAAATTGGCAGCTTATTAGGAAAAGTGGAACAAATTGACTTAGAGGATGAAAAAGAGCAACACTGGAGTCGATCGTTAATAATGAAGATACAAGTTGAAGTTTATTCGCCGTTAAAGCGAGGTATTTTCCTGAAATCAGAGAAAAGGGGGGTTGATAAATGGATCAAACTTACTTATGAAAAACTATCGGATTTCAGTTATGGATGTGGCTTGTTGGGGCATACGATTAAAGAATGTGAAGATGAATGTGGAACCAAAGAAGAATACCTTCCATATGGCCCCTGGCTTAGGGAACCAACGAAATTGGTGAATTATAATTATGTTCCACCAGATAGAGCTGATTTCTTTGGGAGGGGAAGAGGACGAGGAAGAGATGGTGGTCGAGGGAGCTGGAGGCAGGCTAGTTTTGAGGAAGGAGTTGCTGCTACACCGGGATTTTTATCAGACCCAGTAGGATACTACTGCCAGTTCTCAGCTGGAATCTAG

Coding sequence (CDS)

ATGTTGATTGATTGTGTTGGTTTCAATTTGTTCTTATGCAAATTTCAAAATGCTCAAGTTAAAAGTAAAATCATTGAGAATGGACCATGGTTTTTCGATAAAGCAATGCTCTTAATGGAGGAACCAAAAGCAGATAGCTGTGGCGAGGAAACGGATTTCAGGAACACAACAAAGGAAATTGGCAGCTTATTAGGAAAAGTGGAACAAATTGACTTAGAGGATGAAAAAGAGCAACACTGGAGTCGATCGTTAATAATGAAGATACAAGTTGAAGTTTATTCGCCGTTAAAGCGAGGTATTTTCCTGAAATCAGAGAAAAGGGGGGTTGATAAATGGATCAAACTTACTTATGAAAAACTATCGGATTTCAGTTATGGATGTGGCTTGTTGGGGCATACGATTAAAGAATGTGAAGATGAATGTGGAACCAAAGAAGAATACCTTCCATATGGCCCCTGGCTTAGGGAACCAACGAAATTGGTGAATTATAATTATGTTCCACCAGATAGAGCTGATTTCTTTGGGAGGGGAAGAGGACGAGGAAGAGATGGTGGTCGAGGGAGCTGGAGGCAGGCTAGTTTTGAGGAAGGAGTTGCTGCTACACCGGGATTTTTATCAGACCCAGTAGGATACTACTGCCAGTTCTCAGCTGGAATCTAG

Protein sequence

MLIDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDFRNTTKEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKSEKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEYLPYGPWLREPTKLVNYNYVPPDRADFFGRGRGRGRDGGRGSWRQASFEEGVAATPGFLSDPVGYYCQFSAGI
Homology
BLAST of Lag0015576 vs. NCBI nr
Match: XP_021749920.1 (uncharacterized protein LOC110715641 [Chenopodium quinoa])

HSP 1 Score: 108.2 bits (269), Expect = 9.0e-20
Identity = 78/235 (33.19%), Postives = 113/235 (48.09%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDF--------- 62
           I  +  NLF+ +F N + K++I+   PWFFD  +LL++E   D    E  F         
Sbjct: 73  IKMIETNLFVFQFVNEEDKNRILGGMPWFFDGKLLLLKEIIGDEQPSEIVFDRAPMWVRI 132

Query: 63  -------RNTT--KEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
                  RN +  +E+G  LG   +ID  D     W   + +K+ VEV+ PL+RG+FL +
Sbjct: 133 MDVPFNKRNLSVMREVGDSLGGFVKID--DADPLGWGEFIRIKVLVEVHKPLRRGVFL-A 192

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKEC-----EDECGTKEEYLPYGPWLR-EPT 182
              G  KW+ + YE+LSDF + CG+L HT KEC     ED+  T+  Y  YGPWLR  P 
Sbjct: 193 GGNGKAKWVDIKYERLSDFCFYCGILDHTDKECTKKEEEDDSSTEVVY-QYGPWLRASPL 252

Query: 183 KLVNYNYVPPDRADFFGRGRGRGRDGGRGSWRQASFEE----GVAATPGFLSDPV 210
           K+        ++        G  + GG  S+   S  +      A    FLS P+
Sbjct: 253 KISRSMQSDREKERRLVEKLGSKKGGGSISYNNPSTIKLGPVSAARKLNFLSSPL 303

BLAST of Lag0015576 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 9.0e-20
Identity = 71/213 (33.33%), Postives = 108/213 (50.70%), Query Frame = 0

Query: 6   VGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADS---------CGEETDFRNT 65
           +G N+++  F++   KS+++ +GPW F+K++L++  P A +         C       N 
Sbjct: 73  LGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWIQIHNI 132

Query: 66  TKE---------IGSLLGKVEQIDLEDEKEQHWSRSLI-MKIQVEVYSPLKRGIFLKSEK 125
             E         +G+ LG VE+I  E +    W+   I ++++++V  PL+RGI LK+  
Sbjct: 133 PFECISTEMANILGAKLGDVEEI--EGDGADGWAGPFIRVRVKIDVSKPLRRGIKLKNSD 192

Query: 126 RGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEYLP--YGPWLREPTKLVNYN 185
            G D W  L YEKL DF Y CG +GH+ +ECE          P  YG WLR    L+  +
Sbjct: 193 -GKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLR--ATLLKKS 252

Query: 186 YVPPDRADFFGRGR-GRGRD-----GGRGSWRQ 192
              P+   F+  GR GRG       GGRG WR+
Sbjct: 253 VSHPEEEVFWRGGRFGRGHQVNGGRGGRGDWRR 280

BLAST of Lag0015576 vs. NCBI nr
Match: XP_024035600.1 (uncharacterized protein LOC112096408 [Citrus clementina])

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-19
Identity = 57/175 (32.57%), Postives = 95/175 (54.29%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDF--------- 62
           ++ +G N+FL KF +   K +I+  GPW FD++++++ EP      ++ DF         
Sbjct: 88  VESLGDNIFLFKFASESEKKRILFGGPWHFDRSLMVVTEPMGIGDVKKQDFTHALFWVQI 147

Query: 63  ---------RNTTKEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
                    +   +EIG  +GKV++++ +D  E   S  + ++I V V  PL + + LK 
Sbjct: 148 HNIPIMCMDKEIIQEIGGRIGKVQEVETDDAGECMGS-FVRVRIMVNVTRPLPKRLLLKL 207

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEYLPYGPWLREPTK 160
           E RG    +++ YEKL DF + CGL+GH  +EC D  G  ++ L YG W+R  T+
Sbjct: 208 EDRGQIS-LRIAYEKLPDFCFCCGLIGHQYRECLDYKGQSKDDLTYGAWMRAQTR 260

BLAST of Lag0015576 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-19
Identity = 54/172 (31.40%), Postives = 90/172 (52.33%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDFRNTT----- 62
           +D +GFN+FL  F  +  +++I+  GPW FD+A+++++ P + +   + DFRN +     
Sbjct: 74  VDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHF 133

Query: 63  -------------KEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
                          +G+ +G  E ++  +     W   L ++++ +V  PL RGI L  
Sbjct: 134 FDLSLACMNKTMATRLGNAIGLFEDVE-SNANNFCWGSCLRVRVRFDVMKPLHRGIKLNL 193

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDEC-GTKEEYLPYGPWLR 156
           +      WI + YE+L DF Y CG L H +K+C D C  +  + L YGPWLR
Sbjct: 194 DGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKNLQYGPWLR 244

BLAST of Lag0015576 vs. NCBI nr
Match: XP_024033132.1 (uncharacterized protein LOC112095437 [Citrus clementina])

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-19
Identity = 53/171 (30.99%), Postives = 95/171 (55.56%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDFRNTT----- 62
           ++ +G N+F+ KF +   K ++   GPW FD+A+++++EPK     ++  F + +     
Sbjct: 72  VESLGSNIFVFKFLSEADKKRVFNGGPWHFDRALMVLQEPKGIGSIKKQSFSHVSFWIRI 131

Query: 63  -------------KEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
                        +E+GS +GKVE I + D + + +   + +++ V +  PLK+ I LK 
Sbjct: 132 HNVPLMCMDTSIIRELGSRVGKVEDIGM-DAQGECFGEFVRIQVSVNITKPLKKLIVLKQ 191

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEYLPYGPWLR 156
           E    D  + + YE+L DF + CG +GH  +EC +  G ++E LP+GPWL+
Sbjct: 192 ED-DEDIPLPVVYERLPDFCFCCGCIGHQFRECMEYKGQQKENLPFGPWLK 240

BLAST of Lag0015576 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 71/213 (33.33%), Postives = 108/213 (50.70%), Query Frame = 0

Query: 6   VGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADS---------CGEETDFRNT 65
           +G N+++  F++   KS+++ +GPW F+K++L++  P A +         C       N 
Sbjct: 73  LGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWIQIHNI 132

Query: 66  TKE---------IGSLLGKVEQIDLEDEKEQHWSRSLI-MKIQVEVYSPLKRGIFLKSEK 125
             E         +G+ LG VE+I  E +    W+   I ++++++V  PL+RGI LK+  
Sbjct: 133 PFECISTEMANILGAKLGDVEEI--EGDGADGWAGPFIRVRVKIDVSKPLRRGIKLKNSD 192

Query: 126 RGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEYLP--YGPWLREPTKLVNYN 185
            G D W  L YEKL DF Y CG +GH+ +ECE          P  YG WLR    L+  +
Sbjct: 193 -GKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLR--ATLLKKS 252

Query: 186 YVPPDRADFFGRGR-GRGRD-----GGRGSWRQ 192
              P+   F+  GR GRG       GGRG WR+
Sbjct: 253 VSHPEEEVFWRGGRFGRGHQVNGGRGGRGDWRR 280

BLAST of Lag0015576 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.7e-20
Identity = 54/172 (31.40%), Postives = 90/172 (52.33%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDFRNTT----- 62
           +D +GFN+FL  F  +  +++I+  GPW FD+A+++++ P + +   + DFRN +     
Sbjct: 74  VDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHF 133

Query: 63  -------------KEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
                          +G+ +G  E ++  +     W   L ++++ +V  PL RGI L  
Sbjct: 134 FDLSLACMNKTMATRLGNAIGLFEDVE-SNANNFCWGSCLRVRVRFDVMKPLHRGIKLNL 193

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDEC-GTKEEYLPYGPWLR 156
           +      WI + YE+L DF Y CG L H +K+C D C  +  + L YGPWLR
Sbjct: 194 DGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKNLQYGPWLR 244

BLAST of Lag0015576 vs. ExPASy TrEMBL
Match: A0A803MME0 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-19
Identity = 62/183 (33.88%), Postives = 93/183 (50.82%), Query Frame = 0

Query: 1   MLIDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPKADSCGEETDFRNT---- 60
           M++  +  N F+ +F N   K ++++  PWFFD  +LL++E + +    E DF  T    
Sbjct: 71  MVVRMLDTNFFVFQFFNDADKKRVMDGMPWFFDGKVLLLQEIQGEVQPSEVDFECTPMWI 130

Query: 61  --------------TKEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFL 120
                          K IG  LG    I+L+D     W   +  K+ V V  PL+RG+FL
Sbjct: 131 RLFDVPFNRRNPQAIKSIGESLGGF--IELDDNGPLGWGEFVRHKVMVNVKKPLRRGMFL 190

Query: 121 KSEKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKEC----EDECGTKEEYLPYGPWLR-EP 161
            + +    +WI + YE+L+DF + CG+L HT KEC    ED+   +E    YGPW+R  P
Sbjct: 191 ATGE-SKPRWIDIKYERLADFCFYCGILDHTEKECSKKEEDDLEKQEMVYQYGPWMRASP 250

BLAST of Lag0015576 vs. ExPASy TrEMBL
Match: A0A5C7H466 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023726 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 60/210 (28.57%), Postives = 102/210 (48.57%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEPK-----ADSCGEETDF---- 62
           I+ V  N+FL KF N + +++I + GPW+FDK+++++ +P+     +  C    +     
Sbjct: 72  IELVEVNVFLFKFNNQEERNRIWQRGPWYFDKSLIVLVKPEGMGNISQLCFNSVEMWVQI 131

Query: 63  ---------RNTTKEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
                    R   K +   +G+V  +D+  E    W + L +K+Q+++  PLKR + L+ 
Sbjct: 132 HDVPIICMNRRLAKWMAEQIGRV--VDIPTESRDCWGKFLKVKVQIDITKPLKRWLRLRM 191

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEY----LPYGPWLREP-TK 182
           E+      + L YE+L +F Y CG +GH  K+CED    +E        +G W+R P   
Sbjct: 192 EQSPAIVMVSLKYERLPEFCYVCGRIGHASKDCEDVEAKREALERVSTKFGSWMRAPGLD 251

Query: 183 LVNYNYVPPDRAD------FFGRGRGRGRD 184
               N + P          F GR  G+G+D
Sbjct: 252 WQKPNMMKPVEGSSQIQRRFEGRSEGKGQD 279

BLAST of Lag0015576 vs. ExPASy TrEMBL
Match: A0A5C7HBM7 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019557 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.3e-18
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 0

Query: 3   IDCVGFNLFLCKFQNAQVKSKIIENGPWFFDKAMLLMEEP------------KADSCGEE 62
           I+ V  N+FL  F   + ++K+ + GPW FDK +L++E+P            KAD   + 
Sbjct: 72  IEMVSENVFLFFFNKPEDRNKVWDRGPWHFDKCLLVLEKPEGTGEISKLKFNKADFWIQI 131

Query: 63  TDF------RNTTKEIGSLLGKVEQIDLEDEKEQHWSRSLIMKIQVEVYSPLKRGIFLKS 122
            D       R T K +   +G+V  I++  +    W + L +K+++++  PLKR + L  
Sbjct: 132 HDIPIMCMNRRTAKWLAEQIGEV--IEIPTDSRDCWGKFLRVKVRIDISKPLKRWLRLGL 191

Query: 123 EKRGVDKWIKLTYEKLSDFSYGCGLLGHTIKECEDECGTKEEY----LPYGPWLREP 158
           ++ G    + L YE+L +F Y CG LGH I EC D    KE      L +GPW+R P
Sbjct: 192 DRSGNIVVVGLKYERLPEFCYACGWLGHGISECPDTEAKKEAMEGATLRFGPWMRAP 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021749920.19.0e-2033.19uncharacterized protein LOC110715641 [Chenopodium quinoa][more]
XP_022149484.19.0e-2033.33uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_024035600.11.5e-1932.57uncharacterized protein LOC112096408 [Citrus clementina][more]
XP_022132681.12.0e-1931.40uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_024033132.13.4e-1930.99uncharacterized protein LOC112095437 [Citrus clementina][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D7654.3e-2033.33uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1BSZ19.7e-2031.40uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A803MME03.7e-1933.88Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A5C7H4661.4e-1828.57CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02372... [more]
A0A5C7HBM75.3e-1832.77CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01955... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 94..138
e-value: 2.4E-8
score: 33.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015576.1Lag0015576.1mRNA