Lag0015567 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015567
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 16398201 .. 16398545 (+)
RNA-Seq ExpressionLag0015567
SyntenyLag0015567
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCAACCAGTTATCAGTGGCCAACCGAGAGGGGAGCAATTTCAAAGAAGGCTGGAATTTATGAATTGGATGAGTCGAGTTCGTTAAAGGCACAGATGGCATCTCTGACCAACGTGCTGAACAAGCTGACTTCATCTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTGGGAAATAGACCATTTGCTCAAGGAGTACCGAACTTCTACCACCCCAGTCTGCGCAATCACGAGAACTCTTGAACACAAAGAATGTTTTACAACCACCGCCAGGTTTTGTATCGACCAGTGCGCCTGA

mRNA sequence

ATGACGGCAACCAGTTATCAGTGGCCAACCGAGAGGGGAGCAATTTCAAAGAAGGCTGGAATTTATGAATTGGATGAGTCGAGTTCGTTAAAGGCACAGATGGCATCTCTGACCAACGTGCTGAACAAGCTGACTTCATCTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTGGGAAATAGACCATTTGCTCAAGGAGTACCGAACTTCTACCACCCCAGTCTGCGCAATCACGAGAACTCTTGAACACAAAGAATGTTTTACAACCACCGCCAGGTTTTGTATCGACCAGTGCGCCTGA

Coding sequence (CDS)

ATGACGGCAACCAGTTATCAGTGGCCAACCGAGAGGGGAGCAATTTCAAAGAAGGCTGGAATTTATGAATTGGATGAGTCGAGTTCGTTAAAGGCACAGATGGCATCTCTGACCAACGTGCTGAACAAGCTGACTTCATCTGAGGTGGTCAAATCCATTTCCACCTTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTGGGAAATAGACCATTTGCTCAAGGAGTACCGAACTTCTACCACCCCAGTCTGCGCAATCACGAGAACTCTTGAACACAAAGAATGTTTTACAACCACCGCCAGGTTTTGTATCGACCAGTGCGCCTGA

Protein sequence

MTATSYQWPTERGAISKKAGIYELDESSSLKAQMASLTNVLNKLTSSEVVKSISTLAEGYSKKEGQDVEEVQWEIDHLLKEYRTSTTPVCAITRTLEHKECFTTTARFCIDQCA
Homology
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BLAST of Lag0015567 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-05
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1   MTATSYQWPTERGA--ISKKAGIYELDESSSLKAQMASLTNVLNKLTS 47
           +  TSY WP ER +  I K AG+YE+DE +SLKAQMASLTN L+KLT+
Sbjct: 255 LATTSYNWPCERASPNIPKAAGLYEVDEVNSLKAQMASLTNALSKLTA 302

The following BLAST results are available for this feature:
BLAST of Lag0015567 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_217833153.17.2e-0562.50retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
BLAST of Lag0015567 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015567.1Lag0015567.1mRNA