Lag0015545 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015545
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr12: 15730674 .. 15731141 (+)
RNA-Seq ExpressionLag0015545
SyntenyLag0015545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGCCCACCTGGAGAACCATCCGAGTCACCTTCAATGGGAGCCACCAGACCCAAATTATTGGAAGCTGAACGTCGATGCTTCATGGTTCAAAAGAGAATGTGTCGGTGGAATGGGTTGGTTCATTCGTGACTCGAACGGGTCTCTAATCGGAGCGGGCTGCAAAAAAAATCAACAAATTAAAAAGTGGGCGATCAAATGCTTAGAAGTCGGAGCCATTATTGAGGGCCTGAAGGATTACACTAACCATGGCGATTTCAAAGGAAGAAGATGCAAGTTACCCCTTGTCGTTGAATTTGACTCTACCGAAGTTGTTAGAGCTCTGAATAGCGATTTCGAAGACCAATTGGAGCTGAGTTTCGTTTTTGTGGCCACTCCCTTCTTCGCGAGGAAGAAGGTGAAGTGTTTTGGAGGGAAGATCTTTTCCCCAGATGGTTTCCTTGGTTTTACCCAAGGAAGTTAA

mRNA sequence

ATGGAAATGGCCCACCTGGAGAACCATCCGAGTCACCTTCAATGGGAGCCACCAGACCCAAATTATTGGAAGCTGAACGTCGATGCTTCATGGTTCAAAAGAGAATGTGTCGGTGGAATGGGTTGGTTCATTCGTGACTCGAACGGGTCTCTAATCGGAGCGGGCTGCAAAAAAAATCAACAAATTAAAAAGTGGGCGATCAAATGCTTAGAAGTCGGAGCCATTATTGAGGGCCTGAAGGATTACACTAACCATGGCGATTTCAAAGGAAGAAGATGCAAGTTACCCCTTGTCGTTGAATTTGACTCTACCGAAGTTGTTAGAGCTCTGAATAGCGATTTCGAAGACCAATTGGAGCTGAGTTTCGTTTTTGTGGCCACTCCCTTCTTCGCGAGGAAGAAGGTGAAGTGTTTTGGAGGGAAGATCTTTTCCCCAGATGGTTTCCTTGGTTTTACCCAAGGAAGTTAA

Coding sequence (CDS)

ATGGAAATGGCCCACCTGGAGAACCATCCGAGTCACCTTCAATGGGAGCCACCAGACCCAAATTATTGGAAGCTGAACGTCGATGCTTCATGGTTCAAAAGAGAATGTGTCGGTGGAATGGGTTGGTTCATTCGTGACTCGAACGGGTCTCTAATCGGAGCGGGCTGCAAAAAAAATCAACAAATTAAAAAGTGGGCGATCAAATGCTTAGAAGTCGGAGCCATTATTGAGGGCCTGAAGGATTACACTAACCATGGCGATTTCAAAGGAAGAAGATGCAAGTTACCCCTTGTCGTTGAATTTGACTCTACCGAAGTTGTTAGAGCTCTGAATAGCGATTTCGAAGACCAATTGGAGCTGAGTTTCGTTTTTGTGGCCACTCCCTTCTTCGCGAGGAAGAAGGTGAAGTGTTTTGGAGGGAAGATCTTTTCCCCAGATGGTTTCCTTGGTTTTACCCAAGGAAGTTAA

Protein sequence

MEMAHLENHPSHLQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVGAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSDFEDQLELSFVFVATPFFARKKVKCFGGKIFSPDGFLGFTQGS
Homology
BLAST of Lag0015545 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 0

Query: 13  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEV 72
           L+WEPP  + W LN DASW      GG+GW IR  +G ++ AG +  +      +K LE 
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNN--VKLLEA 128

Query: 73  GAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSDFEDQLELSFV 124
            AI+EGL++ TN G  +      PL +E DS EV   LN   ED  +  +V
Sbjct: 129 SAILEGLRNLTNLGVLR------PLHIETDSAEVESLLNRKREDLTKTGWV 171

BLAST of Lag0015545 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-09
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 13  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEV 72
           ++W  P  N WKLN DASW +   VGG+GW + D  G ++ AG  K ++ K+  I  LE+
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKE--INALEL 162

Query: 73  GAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSDFED 117
             II GL+       F   + + P+ +E DS EV+R +  +  D
Sbjct: 163 MTIIRGLQ-------FINMQSRSPIYLESDSVEVIRLMKKEDVD 197

BLAST of Lag0015545 vs. NCBI nr
Match: VDD35472.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 9.5e-08
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 13  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEV 72
           ++W PP   Y K N DA+W K E  GG GW +RD  G LI AG KK  +++  AI+  E 
Sbjct: 418 VKWRPPAERYLKCNTDAAWLKEERSGGAGWILRDHRGRLIWAGAKKLAEVRS-AIEA-EA 477

Query: 73  GAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSDFE 116
            A+   L+  T  G  +       + +E DS +++R +N + E
Sbjct: 478 EAVWWALQTVTGFGYDR-------VQIETDSLQLMRMINGEEE 511

BLAST of Lag0015545 vs. NCBI nr
Match: RLN22769.1 (hypothetical protein C2845_PM07G31160 [Panicum miliaceum])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-07
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 14  QWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEVG 73
           +W PP P+ WK+NVDA+ + +E  G  G+ IRD  GS++ AG  +   +      C E  
Sbjct: 87  RWTPPPPDIWKINVDAACWAKEIDGAWGFVIRDHQGSVVLAGAGRLAVV--CDALCAESH 146

Query: 74  AIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSDFEDQ 118
             IE L+   +HG  +       ++++ DS  +V+AL SD  D+
Sbjct: 147 TCIEALQVVADHGMQR-------IIMKTDSQTLVKALQSDVMDR 181

BLAST of Lag0015545 vs. NCBI nr
Match: PNX56550.1 (ribonuclease H, partial [Trifolium pratense])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 0

Query: 13  LQWEPPDPNYWKLNVDASWFKRECVGGMGWFIRDSNGSLIGAGCKKNQQIKKWAIKCLEV 72
           L+W+ P   +WK NVDAS+ +     G GW IR+S G  + AG   N  + K AI   E 
Sbjct: 248 LRWQRPRDGWWKCNVDASFSQASGQTGWGWCIRNSQGVFVAAG--TNMSMHKLAIVEGEA 307

Query: 73  GAIIEGLKDYTNHGDFKGRRCKLPLVVEFDSTEVVRALNSDFEDQLELSFVFVA 127
            AI+E ++  T+ G          +V E DS  VV A+ ++     ELS + ++
Sbjct: 308 MAILEAMRQATSRGWSN-------IVFESDSKVVVDAIQANHHGIAELSSIILS 352

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.11.4e-1139.64uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.12.3e-0936.54uncharacterized protein LOC111013216 [Momordica charantia][more]
VDD35472.19.5e-0835.92unnamed protein product, partial [Brassica oleracea][more]
RLN22769.16.2e-0733.65hypothetical protein C2845_PM07G31160 [Panicum miliaceum][more]
PNX56550.11.4e-0634.21ribonuclease H, partial [Trifolium pratense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 26..119
e-value: 1.9E-7
score: 30.9
NoneNo IPR availablePANTHERPTHR47074:SF21SUBFAMILY NOT NAMEDcoord: 7..121
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 7..121
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 25..126
e-value: 1.43314E-9
score: 50.7756
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 12..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015545.1Lag0015545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity