Lag0015535 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015535
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr12: 15424859 .. 15428513 (-)
RNA-Seq ExpressionLag0015535
SyntenyLag0015535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAAAGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCGAGAGGGACTTTGTGTTTAATGGTTTGACCATAAACAGGTTGTTTATTAGAGGAGCGCTGGTACTTAAGAGAGAGATGGGTCGATTGGGTTTGGAAGGAGAGAGAGAGAGAAGTGTTGGGGTTTAGAAGGACGAGAGGGAGAAGGGCATTTCGGGAGAAACTCCAACGGGAGAAGCTCTGACGGCGGGGAGACTCCGACGGTGGGGGAGAGAGCGTGGGAAGAACAAGAGAGAAGGTGAGGGAGACGGGGTGGGAAGAAGAAGGAAGGTGGGGGAGAGAGAAAACTTGTGATTTTTTTAAAAAAATGTTTTTAATTATTTTGTTTGATTATTTTATTATTATTTTAATTTAAAAATATTTTTTATTTTTGTAAACGTGCCACGTCAGTACCGTTAAAAAAATTAACGGTGCAGGGACTCAATAGAAGCCTTTTTTAAATAGTGGGGACTTGATTGCTCAATTTTGAAACCTAAAGACCTATTGGAAACTGACCTGAAACAGTAGGGACCAAAAATCTATTTTACCCTTATTATTATTATTATTACTACTACTACTACTTTAATGTTTCACGTTTTGTTAGTTTTTTTTCTGTTTTCTTTTCTTTTTTTTAAAGCATATTGTCATGTCATCCACAGAATGGACGACAACTTTGCCACCCATTCTCCCTCTCTTTAACTTTTTTTTTTCTTTTTTTCTTTTTTTCCTTTCCATTAGTTATATTTTTAATATTTTTTTTATGCTTTTTTTCCTCTGTAACGGACCACGGTTGAACTTCTTAGTTTAGTTAGTTTTTATTTTATTTTTTCTTTATTTATCTTATTGATATATTTTTATGTTTGTTTTTTTTCTTTGACTTTATCCTATTCTTTCTTTTATTTTAATTTTCCATTTATTTATTTGTTGTCTTTATTTATTTCTCTGTTACTTTTTCACATCTCTTCCTAATCTTATTGTATTTAGTTGCATGTCTTAACTTCATTACTTATCATTTGGTAATTAAATTCTTTTAGTATGTTTGTGTGAATTTTGAGAGTGGTATATATATATTTCTGTTCACCATGCTCTTTAAATGTATATATGTAACGCCCCACGTTATAAAATTGGGCTAATTCTAGATCATTTTGATTTATTCTCTAAAGTTTGTATCTAGAAATTAGGCCTAGCTCTTAAGTCAAGAAATTAAATTTCTTAAGATTTAGGGAAAAGAGATTTTATTAAATCTTTAATTCTCTAATTTTGGGATTTAATTTTCATATAGTTTCCCTAAGTTCAAAAATGAATCGATTTTCCTTCTAATTAGACTTTTTCCAAATCCTTTGATTCCTTAATTTGATTTAGAGAGATTCTAGGTTTTTCTTTTCTTTTAGTTATTAAGTTTTATTTAGGGGGTTTAAAGAAATAGAGTAAAGAAAGAAAAAAAAAAAACCCTAGAGCTCTTCCCCTCTCCCTCTTCTCACGCCTTGCAAGCTGCCAGACCCCCCCCCCCACTCTCTCCTTCTTCATCTCGGTAGCAACTCCCTTCCTCTCTTGGTTTCTTCTTTCGGTCGTAGCCCAACCCACCGTGTCACCGTCGTCGGAGTTGCAGTGTCACCGCCTAGCTCGAGCCACACTGTCGCTCTATCTGTCTGTCTCTCCCTCGTTCGTCTTCTCCGTTGGCAGCTAGAGGCTCGTGGAATTCGTCTCTTGCACGTCGGCATCGTCTCTCGCAGCGTCGCATCCTTGCACGCAAACTAGTCTCTCCAACGAGCATCCACGCGTGTGAACACCGCGTTTTGCGGCTCTGTAAGTCTCCGTCTCTCTTTTGTTTTTTTTTTCTGTTTAGTTCAGTAGGATGTGGGTTCTTTTTCAATTTCTTTTCAGTTCGGCAAGCAGTGAGTTTGATCTTCTATTCCTCTTGTTCTCGGGCATACTAGAGAATAGAAGTATGAATCTTCGTTGCTCCTACGTTTTGGGCACGTTCGGGCTGGTTTGAGGTTTGTTTCGGCGTGTTGGGGCTCTTTTGGTAAGCTTTGAACGTTACCCATGCTTTATTAAACTGAAATTTAGCTTACCTAGTCTTGTTCAGCCGTAGAATTGAGCTTTAGGATTGAATTCTTGAATTTCCAACGTTGTGTAGTGTCGTCTTTGATACGAAATCATCCTCGTCTCGTGACCCATCATATGTGGGTTCTTTTTTTATTTCTTTTCAGTTCAGCAAGCAGTGAGTTTGATATTCTCTTCCTCTTTTTCTCGACCATACTAGAGAATAGAAGTCTAAATCTTCGTTGCTCTTGCGTTTTGGGTGCGTTTGGGCTGGTTTAAGGTTTGTTTCAGCGTGTTCGGGCTCTTTTGGTAAGCTTTGAACATTACCCATGCTTTATTAAACTAAAATTCAGCTTACCCAGTCTTGTTCAGCCTTAGAATTGAGCTTTAGGATTGAATTCTTGAATTTCCAACGTTGTGCAGTGCCGTCTTGGACACGAAATCATCCTCGTCTCGTGACCCATCATCTGTTTGGCCTTAAATCGAACACCCATTGTCTAGGGACTCCAAACAAGTGGTTTCAAGTCCCTTTGTTTGTTGGACAGCACGTGTTCGAGGTTAATCGCTTGTTGAACGGTAAATTCCAGCACCTTTTCGTTTCCTTTATCAAGAATTTTAGGTGCTTTAAATCAATTCCTAACCCCTAGTAGTCATTTCTTGTAGTTCAATCTCTTTGGGCTTTTCGATTGGTTCTGTTGATCGTTTAGAATTGCTTAGAAGCGCTTCTGGTAAGTGGATTTCTACCTGTGTAGTCTGTTTGCTTGTTTGTTAGCATGTTGTATACTTTATTTTATTAGTTCCGATATACATTGGATATATGTATATGTTGTTATGCTAATAACGAGTTTCTAGCATGTTGAACTGATATATCGAACTGTTGTATCGATGTATGTTGAGTGGTTGTGAGGCGATCTGGTTATGATAAGCATGTTGTTATCTTGTTGTGATTGGTTATAAAGCATGATTTTAATGTTGTGAGCATGTATTGCACTTTTGGTTGTTGCATGGATTAAAGCATGACATGAGCTAAAAGACCATGTTTAGGTTGTGCATTGTGGGTGTGAACCTGTCTAGTGAAAGAATGGTTAGAGGACCTTATGCGATAGTGAGATTATGAGGTCAGAGAACCTTGTGTGTAACATTGAGACTGTGAGGTCAGAGGACCTTGTATGTGTTAATGGAAAGTAAGGTGACTACCAGGTGCCTCAGGTACAAATGGTCGAGGGGTGGTATGTCACCGATGGATTTAAGGGGAGCATCGAAGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGCCTATGAAAGCAAGTATTGGATGCCTAGGAAAGGGCCAATATGTTGCTAGACATCGAGGCCTTGGGTACAAATGGCCAAGGGTCGATGCAACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTCGAACACCGAGCTCCGTAG

mRNA sequence

ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAAAGTTCCCTTAAGTGCCCAACCCACCGTGTCACCGTCGTCGGAGTTGCAGTGTCACCGCCTAGCTCGAGCCACACTGTCGCTCTATCTGTCTGTCTCTCCCTCGTTCGTCTTCTCCGTTGGCAGCTAGAGGCTCGTGGAATTCGTCTCTTGCACGTCGGCATCGTCTCTCGCAGCGTCGCATCCTTGCACGCAAACTATTCGGCAAGCAGTGAGTTTGATCTTCTATTCCTCTTGTTCTCGGGCATACTAGAGAATAGAATGCCGTCTTGGACACGAAATCATCCTCGTCTCGTGACCCATCATCTGTTTGGCCTTAAATCGAACACCCATTGTCTAGGGACTCCAAACAAGTGGTTTCAAGTCCCTTTGTTTGTTGGACAGCACGTGTTCGAGGTTAATCGCTTGTTGAACGGTAAATTCCAGCACCTTTTCGTTTCCTTTATCAAGAATTTTAGGTGCCTCAGGTACAAATGGTCGAGGGGTGGTATGTCACCGATGGATTTAAGGGGAGCATCGAAGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGCCTATGAAAGCAAGTATTGGATGCCTAGGAAAGGGCCAATATGTTGCTAGACATCGAGGCCTTGGGTACAAATGGCCAAGGGTCGATGCAACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTCGAACACCGAGCTCCGTAG

Coding sequence (CDS)

ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAAAGTTCCCTTAAGTGCCCAACCCACCGTGTCACCGTCGTCGGAGTTGCAGTGTCACCGCCTAGCTCGAGCCACACTGTCGCTCTATCTGTCTGTCTCTCCCTCGTTCGTCTTCTCCGTTGGCAGCTAGAGGCTCGTGGAATTCGTCTCTTGCACGTCGGCATCGTCTCTCGCAGCGTCGCATCCTTGCACGCAAACTATTCGGCAAGCAGTGAGTTTGATCTTCTATTCCTCTTGTTCTCGGGCATACTAGAGAATAGAATGCCGTCTTGGACACGAAATCATCCTCGTCTCGTGACCCATCATCTGTTTGGCCTTAAATCGAACACCCATTGTCTAGGGACTCCAAACAAGTGGTTTCAAGTCCCTTTGTTTGTTGGACAGCACGTGTTCGAGGTTAATCGCTTGTTGAACGGTAAATTCCAGCACCTTTTCGTTTCCTTTATCAAGAATTTTAGGTGCCTCAGGTACAAATGGTCGAGGGGTGGTATGTCACCGATGGATTTAAGGGGAGCATCGAAGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGATGAGCCTATGAAAGCAAGTATTGGATGCCTAGGAAAGGGCCAATATGTTGCTAGACATCGAGGCCTTGGGTACAAATGGCCAAGGGTCGATGCAACAGTTCGAGGCCTTGGGTACAAATGGTCAAGGGTCGAACACCGAGCTCCGTAG

Protein sequence

MGESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLGEVDESSLKCPTHRVTVVGVAVSPPSSSHTVALSVCLSLVRLLRWQLEARGIRLLHVGIVSRSVASLHANYSASSEFDLLFLLFSGILENRMPSWTRNHPRLVTHHLFGLKSNTHCLGTPNKWFQVPLFVGQHVFEVNRLLNGKFQHLFVSFIKNFRCLRYKWSRGGMSPMDLRGASKPWVQMVKGRCDEPMKASIGCLGKGQYVARHRGLGYKWPRVDATVRGLGYKWSRVEHRAP
Homology
[Close]
BLAST of Lag0015535 vs. NCBI nr
Match: KAA0049822.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-07
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 2   GESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLGEVDESSL----KCPTHRV 54
           GESGQ ADSI L FWGQDRVG W   TQ+GIHSFP LG     +L    + P HR+
Sbjct: 317 GESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLGLFIRGALVLRTRAPPHRL 372

[Close]
BLAST of Lag0015535 vs. NCBI nr
Match: TYK08698.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-07
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 2   GESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLG 40
           GESGQ ADSI L FWGQDRVG W   TQ+GIHSFP LG
Sbjct: 317 GESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLG 354

[Close]
BLAST of Lag0015535 vs. NCBI nr
Match: TYK30754.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-06
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 1   MGESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLGEVDESSLK 48
           +G+SGQ ADSICL FW + + G  ++ TQ+GIHSFP LG+VD+  LK
Sbjct: 224 LGKSGQIADSICLSFWDKTKWGVGNIITQDGIHSFPPLGQVDKCFLK 270

[Close]
BLAST of Lag0015535 vs. ExPASy TrEMBL
Match: A0A5A7U202 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1591G00150 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 2   GESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLGEVDESSL----KCPTHRV 54
           GESGQ ADSI L FWGQDRVG W   TQ+GIHSFP LG     +L    + P HR+
Sbjct: 317 GESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLGLFIRGALVLRTRAPPHRL 372

[Close]
BLAST of Lag0015535 vs. ExPASy TrEMBL
Match: A0A5D3CBX3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00530 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-07
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 2   GESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLG 40
           GESGQ ADSI L FWGQDRVG W   TQ+GIHSFP LG
Sbjct: 317 GESGQIADSIWLSFWGQDRVGRWKHITQDGIHSFPPLG 354

[Close]
BLAST of Lag0015535 vs. ExPASy TrEMBL
Match: A0A5D3E4C4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00950 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 1   MGESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLGEVDESSLK 48
           +G+SGQ ADSICL FW + + G  ++ TQ+GIHSFP LG+VD+  LK
Sbjct: 224 LGKSGQIADSICLSFWDKTKWGVGNIITQDGIHSFPPLGQVDKCFLK 270

[Close]
BLAST of Lag0015535 vs. ExPASy TrEMBL
Match: A0A5A7T0G5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00190 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 3   ESGQYADSICLPFWGQDRVGGWDMTTQEGIHSFPLLGEVDESS 46
           ESGQ ADSICL FW +   G  ++ TQ+GIHSFP LG +   S
Sbjct: 487 ESGQIADSICLSFWDKTEWGAGNIITQDGIHSFPPLGSIRSPS 529

The following BLAST results are available for this feature:
BLAST of Lag0015535 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049822.12.2e-0758.93reverse transcriptase [Cucumis melo var. makuwa][more]
TYK08698.18.4e-0776.32reverse transcriptase [Cucumis melo var. makuwa][more]
TYK30754.17.1e-0657.45gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Lag0015535 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0015535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U2021.1e-0758.93Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3CBX34.1e-0776.32Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3E4C43.4e-0657.45Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0095... [more]
A0A5A7T0G55.5e-0455.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G001... [more]
BLAST of Lag0015535 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015535.1Lag0015535.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity