Lag0015523 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015523
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Enzymatic polyprotein
Location	chr12: 15219559 .. 15221008 (+)
RNA-Seq Expression	Lag0015523
Synteny	Lag0015523

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAATTACCAGAAACCCAACATGGAGGCTTACAGAAGCTTTCACACCTCCAAAAAAGAATTCAAACCTTGCTCAAATTATCGAACATCCAGATGGATCAGTAGAAGTTCAATTTTCTGATGAACCAGAAAGGTCAAAGGTCAAAGACTTCATGTCTTCACGACCTAGTACTTCTGGATCAACTTCAGAAGATGGATCAAAATTCTATATGAATAGATCTAACTCGTTAAGAGTAAAATCTGTAAATATAGAACAAAATGAAGCAAATGTTCAATGCGAGGATCAACCTCAATCACCGACTCAAACGGACATGGATGGTAGATCTGTGTTCGAAAGTCAATTGAATGTCCTTATTCAAGAATTTTCAATCGATAAAGCCTTAAAAAGGGACTTTCTTTCCCGAAAAATAATACAAAAAGAGAAGCCTTTTTCAAAAACTATGATAAAGACCAAAGATCTGAGATAAGATCAAAATGGTATTCATTCATGGAAGAAACCGAACGAAATATTCCATTTTTTACTTGGATGAAAGAATCCGAGAATGAAATCAAATATGCTTCAAGAATCATGGAAAACCACTCAAAGAGGGAGCATACACTCTACTCATCCTCCCTTAGAAGAAATTGAATTTGAAACAATCTACGGGGAAAAGGTCAAAGCTAGTCCATTCAAAAATATTAGTGAAAAGGACGAGAAGAACGTTCCTACTCTTAAGGATATAAAAAATATCCAGCTTCAAAACAATTTTTCCAATAAAATCCTTTCTACTATAGCTAACCAAGTAGAAAAGATTGAAGGGAAAATATCAAAGCCTTCAATTACTTCGTCTTCAAACAAGAAATCTTTATACCTCCCATTGATGAGTCAATTCCATTATTCAAACCTACAGTAATTGACAGCAAGATTAAAATAATGTCCAAAGAAGAAGAACCTAACTTTAATTGAAGAAAAGCTAAGTAGTCTTCATATCTCAAAACCATCAACTTCGAAGTCAACCCCTACAATCAACGTCCTAAGTGATTCTGTTATTGATCAAATTATTCAAAAAACAAGAAATCTTTCCTTAGAGGAAGAAGCGACTGAACTACCAAACGAAGTCTTAAAAATAGGAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGATTGCGAGATTTATTGATTCAAGAAAGAAGGGCCCAAAGAAATACGAGAACTTTTATGTGCCTTGACAGAATGGATGAGTACGTCAAGCTAAAGACGTTAAACAAGCGCTTATGGGAGGCAACCCAAGTAAGTGCAGTTGTGTTTTTCTTTTTGCTTGTGATTTATTGTTTATTTTTGTTTTGTAGGTCTTGGTTCCAGTTTCTCCTTTGCTTGCAAGCTTCCATAA

mRNA sequence

ATGGGAACAATTACCAGAAACCCAACATGGAGGCTTACAGAAGCTTTCACACCTCCAAAAAAGAATTCAAACCTTGCTCAAATTATCGAACATCCAGATGGATCAGTAGAAGTTCAATTTTCTGATGAACCAGAAAGGTCAAAGGTCAAAGACTTCATGTCTTCACGACCTAGTACTTCTGGATCAACTTCAGAAGATGGATCAAAATTCTATATGAATAGATCTAACTCGTTAAGAGTAAAATCTGTAAATATAGAACAAAATGAAGCAAATGTTCAATGCGAGGATCAACCTCAATCACCGACTCAAACGGACATGGATGGTCTTGGTTCCAGTTTCTCCTTTGCTTGCAAGCTTCCATAA

Coding sequence (CDS)

ATGGGAACAATTACCAGAAACCCAACATGGAGGCTTACAGAAGCTTTCACACCTCCAAAAAAGAATTCAAACCTTGCTCAAATTATCGAACATCCAGATGGATCAGTAGAAGTTCAATTTTCTGATGAACCAGAAAGGTCAAAGGTCAAAGACTTCATGTCTTCACGACCTAGTACTTCTGGATCAACTTCAGAAGATGGATCAAAATTCTATATGAATAGATCTAACTCGTTAAGAGTAAAATCTGTAAATATAGAACAAAATGAAGCAAATGTTCAATGCGAGGATCAACCTCAATCACCGACTCAAACGGACATGGATGGTCTTGGTTCCAGTTTCTCCTTTGCTTGCAAGCTTCCATAA

Protein sequence

MGTITRNPTWRLTEAFTPPKKNSNLAQIIEHPDGSVEVQFSDEPERSKVKDFMSSRPSTSGSTSEDGSKFYMNRSNSLRVKSVNIEQNEANVQCEDQPQSPTQTDMDGLGSSFSFACKLP

Homology

[Close]

BLAST of Lag0015523 vs. NCBI nr
Match: KAA0057417.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 4   ITRNPTWRLTEAFTPPKKNSNLAQIIEHPDGSVEVQFSDEPERSKVKDFMSSRPSTSGST 63
           +T+NP W+L    TP K++S  A IIE PDG+VEVQF+      ++ + MSSRPSTS   
Sbjct: 166 LTKNPIWKLQGETTPIKRSSTEASIIEFPDGNVEVQFNTGISYPRISEIMSSRPSTSSIK 225

Query: 64  SEDGSKFYMNRSNSLRVKSVNIEQN--EANVQCEDQPQSPTQTDMD 108
           +E   +  + RS S+R  SV+      + + + ED+  SPTQ++M+
Sbjct: 226 TETSYRDTLRRSESIRA-SVDFSHTIPDVHYEKEDESLSPTQSNME 270

[Close]

BLAST of Lag0015523 vs. NCBI nr
Match: KAA0041674.1 (movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.3e-08
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 4   ITRNPTWRLTEAFTPPKKNSNLAQIIEHPDGSVEVQFSDEPERSKVKDFMSSRPSTSGST 63
           +T+NP W+L    TP K++S  A I E PDG+VEVQF+      ++ + MSSRPSTS   
Sbjct: 260 LTKNPIWKLQGETTPIKRSSTEASITEFPDGNVEVQFNTGISYPRISEIMSSRPSTSSIK 319

Query: 64  SEDGSKFYMNRSNSLRVKSVNIEQNEANVQCEDQPQS--PTQTDMD 108
           +E   K  + RS S+R  SV+      +V  E +  S  PTQ+DM+
Sbjct: 320 TETSYKDTLRRSESIRA-SVDFSHTIPDVHYEKKDGSLYPTQSDME 364

[Close]

BLAST of Lag0015523 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.6e-08
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 4   ITRNPTWRLTEAFTPPKKNSNLAQIIEHPDGSVEVQFSDEPERSKVKDFMSSRPSTSGST 63
           +T+NP W+L     P  ++S  A I E PDG+VEVQF+      K+ + MSSRPSTS   
Sbjct: 261 LTKNPIWKLQGETAPVTRSSTEASITEFPDGNVEVQFNSGLSYPKISEIMSSRPSTSSIK 320

Query: 64  SEDGSKFYMNRSNSLRVKSVNIEQN--EANVQCEDQPQSPTQTDMD 108
           SE   +  + RS S+R  SV+      + + + ED   SPTQ+DM+
Sbjct: 321 SEASYRETLRRSESIRA-SVDFSHTIPDIHYEKEDGSLSPTQSDME 365

[Close]

BLAST of Lag0015523 vs. NCBI nr
Match: TYK28080.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-08
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 4   ITRNPTWRLTEAFTPPKKNSNLAQIIEHPDGSVEVQFSDEPERSKVKDFMSSRPSTSGST 63
           +T+NP W+L    TP K++S  A I E PDG+VEVQF+      ++ + MSSRPSTS   
Sbjct: 260 LTKNPIWKLQGETTPIKRSSTEASITEFPDGNVEVQFNTGISYPRISEIMSSRPSTSSIK 319

Query: 64  SEDGSKFYMNRSNSLRVKSVNIEQN--EANVQCEDQPQSPTQTDMD 108
           +E   +  + RS S+R  SV+      + + + ED   SPTQ+D +
Sbjct: 320 TETSYRDTLRRSESIRA-SVDFSHTIPDVHYEKEDGSLSPTQSDTE 364

[Close]

BLAST of Lag0015523 vs. NCBI nr
Match: KAA0032920.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-08
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 4   ITRNPTWRLTEAFTPPKKNSNLAQIIEHPDGSVEVQFSDEPERSKVKDFMSSRPSTSGST 63
           +T+NP W+L    TP K++S  A I E PDG+VEVQF+      ++ + MSSRPSTS   
Sbjct: 260 LTKNPIWKLQGETTPIKRSSTEASITEFPDGNVEVQFNTGISYPRISEIMSSRPSTSSIK 319

Query: 64  SEDGSKFYMNRSNSLRVKSVNIEQN--EANVQCEDQPQSPTQTDMD 108
           +E   +  + RS S+R  SV+      + + + ED   SPTQ+D +
Sbjct: 320 TETSYRDTLRRSESIRA-SVDFSHTIPDVHYEKEDGSLSPTQSDTE 364

The following BLAST results are available for this feature:

BLAST of Lag0015523 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057417.1	5.1e-09	40.57	Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprote...	[more]
KAA0041674.1	3.3e-08	41.51	movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumi...	[more]
KAA0056776.1	5.6e-08	40.57	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYK28080.1	7.4e-08	39.62	movement protein [Cucumis melo var. makuwa]	[more]
KAA0032920.1	7.4e-08	39.62	movement protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0015523 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015523.1	Lag0015523.1	mRNA