Lag0015520 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGATTCTGTCACTGCCTTAGATCCTGTAGCACCTACAACTGCTACAACTTCGGCAAATTCCTCATCTAGCCTCTTTGTTCTTGAATTGTATGTCAATCCCTATTTTCTTCATCACTCTGACAGCACCAGTATCGTTCTTGTATCAAATTTGTTGACTGAAACGAATTACACCTCATGGAGTTAGGCGATGAAGATTGGATTGACGGTCAAGAACAAGTTCGGTTTTGTAGATGGAACGCTTCCTCGTCCTTCGAATGAATTGAATTCATGGATCATTTGCAACAGTGTGGTTACATCATGGATTCTCAACTCGTTTTCTCCAAAGATTTCTGCTAGTGTGAATTTTGCGGACACTGCTCATCAGATTTGGAAAAACATGTACAAAGTCTCTCAAAAGGCTGCCTTTACTTTTTAACATTTGATTTTGTGTGTTGGCCTTCGGCCATTACCTAACAATATAATTCTTCTCCGCCCACGCGGCTTCCTTTTTCTCCCACTTTCCAGGGTTTTTTGTAAAAGTAAACAAGAAAATGAAAAAAATTAGAAAAGGCAACTACTTTTAAAATTATTCTGAAAATACATGAGGCGCGACACTTCCATTTTTAATTTTTTTTTTTTTTCTTGAGGCTCATGCATGGTTTTTATAACAAGTTATTTTTGTCCTTCATTTTTGTTGAGAATTTTTTTTGGTGGAGTCTAAGAAGCATTTCAGCTTTTTTATTTTTTATTTTTTTTTAACCAGTTTTCATATACACACTTAGAGGAATTTTAAAATTAAACAGTTATTTCTTCTTTTGTTTGAAATGTGAAATTTCAATTCTGAAAATTACTTGTTTATTTTTTTAATTTTTTTTAAGTTGAATTGAGAATATTTGTATGCGAAACATGATAAAAAGTATTTTCTTAACGAATAACTTGATATTAATTGAGTAAGCTTTCAACAATATATAATGAATATATATTGTTTGATGTCCCTAGCAAGAAAGACGTTTCAATTTACTATAGTTTCAATGTTGGCATATAGTTAAATTTTATTTTGTTTTGATGCATTTTAATTATAATACTTATTTCGCTATTAATGCAATCATGTTTGGAAGAAAAAGATTTATTTCTTTTCAAAAAAAAATGTTTGGAAGAAAAAATAATTAAAAAAATCATTAATAAGATTCTCTTTTTTGTTATTTCTTATTAAAATAAACATGTAGCACCTAAATTTTATTCTCATCTTTAATTTTTTTTTTAAATAATTCTCATCTTCAATTTAGCCATTAAAATTAGTTTTTTTTTAACGGATATAATACACATATATACTTGATAAATTAGTATAGATATCAAATTCAAAAGGTAAAGACAAGAATTAATAGTAAAATGATATGCTTTGTTTTAGTTATTGATTAATATTAATGTATAATTAATAGTTCATAATATTAAAGATAAAAAGTTTGGATATTTATAATATATTAGAAATTGAGAAAAAAAAAAGCTTGTTTAATCAAGGGCAAGAAGAACCTACACCTCATAACCTTCTTTAAATTTAGAAAATGTGAAAATGTAAAAAATTATATTTAAAAGAATTATAGAGAGTTATTTAAAAAAAATTGCAAACTTTAAAATTTTAAAACATAATCATTATGTTATGATTAAGAATTTTAATCTATCATTAAATAAAATAAAATAAATTAAAAAATGGATTAAAATAAATGGTTGATTTGACAAAGTAATATAAAAATTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATGTCACGCCTCTTCAAGAGGCGTGACACCATATTTCGCCAATTAGTTTTAAAAGTCTTGTTTTTTCTAAATTTTTTCACTTTTTCTGTTATGTTTCCAAAAAACCCCACTTTCCATTTACGTCTTTATTTATTCACAATTTGATTTAGGATTGTTTTTTTTTTTCCTTTTTTTTAGAAGAATTTGATTTGGGATTGTTGGTTTCAAATTTCAATCGTTTCACATTGACCACCAAATAACAGAAATCTGATGAAAAATAAAGTTGTATTATAATGTTTTTATTAAATCTTTACTATACACATTTGGTAGTTGATTTAAGAATTGAATCTCCATTTGGCGTTTACTTCAACTACCTCAATTTTTGCTGGCACAAGTTCTGAAAGCAAGATACTACCCTCACCAAGACTTCTTGAAAGCAGGTTTGGGAAGTAGACCATCTTATGTCTGGAGAGGAATTCTATGGGGCCGTGAATTAGCTATGAAAGGTGGCAGGTGGAGGGTTGGAAATGGAAAATCCATTGACATCTTTGAAGATCAATGGATTCCAAGAATGAAGACGTTTAAGATTTTATCTCCCAAGCGCCCGTTGTCAGACTTTAGAGTCAGCAGCCTAGTTTCTTCTAGCCTAACATGGAATATTGATTTGCTAACTAATCTTTTTGTGCAGGATGATGTGGCAACAATACAAGAGATTCTATTACAGGGGGTCAACAAGCAGACAGTTTCTTTTGGCATTACGATCAGCGAGGCAAATATTCTGTATGGAGTGGATATAAGCTTGCTATGGAGGACTCTGAGGATGAGCCATCATCTTCAGATTCCTCCAAAACCACATGGTGGCAGACCGTTTGGACTCTAA ATGTCTGATTCTGTCACTGCCTTAGATCCTGTAGCACCTACAACTGCTACAACTTCGGCAAATTCCTCATCTAGCCTCTTTGTTCTTGAATTGTATGCGATGAAGATTGGATTGACGGTCAAGAACAAGTTCGGTTTTGTAGATGGAACGCTTCCTCGTCCTTCGAATGAATTGAATTCATGGATCATTTGCAACAGTGTGGTTACATCATGGATTCTCAACTCGTTTTCTCCAAAGATTTCTGCTAGTGTGAATTTTGCGGACACTGCTCATCAGATTTGGAAAAACATATACTACCCTCACCAAGACTTCTTGAAAGCAGGTTTGGGAAGTAGACCATCTTATGTCTGGAGAGGAATTCTATGGGGCCGTGAATTAGCTATGAAAGGTGGCAGGTGGAGGGTTGGAAATGGAAAATCCATTGACATCTTTGAAGATCAATGGATTCCAAGAATGAAGACGTTTAAGATTTTATCTCCCAAGCGCCCGTTGTCAGACTTTAGAGTCAGCAGCCTAGTTTCTTCTAGCCTAACATGGAATATTGATTTGCTAACTAATCTTTTTGTGCAGGATGATGTGGCAACAATACAAGAGATTCTATTACAGGGGGTCAACAAGCAGACAGTTTCTTTTGGCATTACGATCAGCGAGGCAAATATTCTGTATGGAGTGGATATAAGCTTGCTATGGAGGACTCTGAGGATGAGCCATCATCTTCAGATTCCTCCAAAACCACATGGTGGCAGACCGTTTGGACTCTAA ATGTCTGATTCTGTCACTGCCTTAGATCCTGTAGCACCTACAACTGCTACAACTTCGGCAAATTCCTCATCTAGCCTCTTTGTTCTTGAATTGTATGCGATGAAGATTGGATTGACGGTCAAGAACAAGTTCGGTTTTGTAGATGGAACGCTTCCTCGTCCTTCGAATGAATTGAATTCATGGATCATTTGCAACAGTGTGGTTACATCATGGATTCTCAACTCGTTTTCTCCAAAGATTTCTGCTAGTGTGAATTTTGCGGACACTGCTCATCAGATTTGGAAAAACATATACTACCCTCACCAAGACTTCTTGAAAGCAGGTTTGGGAAGTAGACCATCTTATGTCTGGAGAGGAATTCTATGGGGCCGTGAATTAGCTATGAAAGGTGGCAGGTGGAGGGTTGGAAATGGAAAATCCATTGACATCTTTGAAGATCAATGGATTCCAAGAATGAAGACGTTTAAGATTTTATCTCCCAAGCGCCCGTTGTCAGACTTTAGAGTCAGCAGCCTAGTTTCTTCTAGCCTAACATGGAATATTGATTTGCTAACTAATCTTTTTGTGCAGGATGATGTGGCAACAATACAAGAGATTCTATTACAGGGGGTCAACAAGCAGACAGTTTCTTTTGGCATTACGATCAGCGAGGCAAATATTCTGTATGGAGTGGATATAAGCTTGCTATGGAGGACTCTGAGGATGAGCCATCATCTTCAGATTCCTCCAAAACCACATGGTGGCAGACCGTTTGGACTCTAA MSDSVTALDPVAPTTATTSANSSSSLFVLELYAMKIGLTVKNKFGFVDGTLPRPSNELNSWIICNSVVTSWILNSFSPKISASVNFADTAHQIWKNIYYPHQDFLKAGLGSRPSYVWRGILWGRELAMKGGRWRVGNGKSIDIFEDQWIPRMKTFKILSPKRPLSDFRVSSLVSSSLTWNIDLLTNLFVQDDVATIQEILLQGVNKQTVSFGITISEANILYGVDISLLWRTLRMSHHLQIPPKPHGGRPFGL Homology
BLAST of Lag0015520 vs. NCBI nr
Match: XP_015388578.1 (uncharacterized protein LOC107178209 [Citrus sinensis]) HSP 1 Score: 109.8 bits (273), Expect = 3.6e-20 Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 0
BLAST of Lag0015520 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber]) HSP 1 Score: 107.1 bits (266), Expect = 2.3e-19 Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 0
BLAST of Lag0015520 vs. NCBI nr
Match: XP_024038356.1 (uncharacterized protein LOC112097383 [Citrus clementina]) HSP 1 Score: 105.5 bits (262), Expect = 6.7e-19 Identity = 50/123 (40.65%), Postives = 70/123 (56.91%), Query Frame = 0
BLAST of Lag0015520 vs. NCBI nr
Match: XP_030964226.1 (uncharacterized protein LOC115985426 [Quercus lobata]) HSP 1 Score: 105.1 bits (261), Expect = 8.8e-19 Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 0
BLAST of Lag0015520 vs. NCBI nr
Match: XP_024038343.1 (uncharacterized protein LOC112097373 [Citrus clementina]) HSP 1 Score: 104.4 bits (259), Expect = 1.5e-18 Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 0
BLAST of Lag0015520 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.6e-07 Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 0
BLAST of Lag0015520 vs. ExPASy TrEMBL
Match: A0A803P9P5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 7.2e-19 Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = 0
BLAST of Lag0015520 vs. ExPASy TrEMBL
Match: A0A6J5TGK7 (CCHC-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS2532 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18 Identity = 50/111 (45.05%), Postives = 75/111 (67.57%), Query Frame = 0
BLAST of Lag0015520 vs. ExPASy TrEMBL
Match: A0A6P3Z8V7 (uncharacterized protein LOC107410610 OS=Ziziphus jujuba OX=326968 GN=LOC107410610 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 2.8e-18 Identity = 47/115 (40.87%), Postives = 73/115 (63.48%), Query Frame = 0
BLAST of Lag0015520 vs. ExPASy TrEMBL
Match: M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18 Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 0
BLAST of Lag0015520 vs. ExPASy TrEMBL
Match: A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18 Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 0
BLAST of Lag0015520 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 9.4e-11 Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0
BLAST of Lag0015520 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08 Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0
BLAST of Lag0015520 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08 Identity = 21/58 (36.21%), Postives = 37/58 (63.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|