Lag0015450 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015450
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr12: 13282546 .. 13283555 (-)
RNA-Seq ExpressionLag0015450
SyntenyLag0015450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAGAGGTGCCGCATAAATTCAAAATATCAAACTTCCCGCAGTATGATGGAAAGAAAGATCTGAAACAGCACATAGATGCATACCTAACTTGGATGGATTTTCACAGGGCGAACGAAGCGACAAGGTGTCGAGTCTTTGCACTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCAAGATCCCACGAAAGTCAATTGATTCTTTTAGAGAGCTGGCCCGACCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAAAAGCCTCAGATCAACCTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGGATTATATTAACAGATTTAGTTACGAAGTTTTGCAGGTGGAAGGTTACGATGACGGGGTTGCCTTGACCGCGATGATTTCAGGTTTGCAAGATGAAACGTTGCTCAACTCAATCGGAGAGAGCCAGCCACGAACATACGTGGAGTTTATGACCCGAGCACAAAGGTACATAAGCGCCAAGGAACTATTGAGATCCAAACAGGAAGAAAGAGAGAGTCGGGGGATGTCTATATCAGACCGGCATTGAGAAGACAGAGGAAAGAGGCACCAGGTCGAGGGAAGAGGCCGGAGTCGACTTGAGCACTCCTCGGCCAATGGCCAGGCCGACCAGAGGCCAAGGAGCCGCAGGGTCATGCGAAACCAAAAGCCAGATTCGACAGGTATACACCACTAACAGCTTCGCTTGAACAGGTCTTGGCCGCAATATAGGACACGAATCTGTTGAAACGCCCAGAAAAGTTGAGATTAGACCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCACAGAGACCACGGTCACACAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAGCAAGAGACCACTGCCAGTAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATACGAACAATTTTAGGATGA

mRNA sequence

ATGGGAGGAGAGGTGCCGCATAAATTCAAAATATCAAACTTCCCGCAGTATGATGGAAAGAAAGATCTGAAACAGCACATAGATGCATACCTAACTTGGATGGATTTTCACAGGGCGAACGAAGCGACAAGGTGTCGAGTCTTTGCACTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCAAGATCCCACGAAAGTCAATTGATTCTTTTAGAGAGCTGGCCCGACCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAAAAGCCTCAGATCAACCTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGGATTATATTAACAGATTTAGTTACGAAGTTTTGCAGGTGGAAGGTTACGATGACGGGGTTGCCTTGACCGCGATGATTTCAGGTTTGCAAGATGAAACGTTGCTCAACTCAATCGGAGAGAGCCAGCCACGAACATACGTGGAGTTTATGACCCGAGCACAAAGAGGAAAGAGGCACCAGGTCGAGGGAAGAGGCCGGAGTCGACTTGAGCACTCCTCGGCCAATGGCCAGGCCGACCAGAGGCCAAGGAGCCGCAGGGTCATGCGAAACCAAAAGCCAGATTCGACAGAAAAGTTGAGATTAGACCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCACAGAGACCACGGTCACACAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAGCAAGAGACCACTGCCAGTAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATACGAACAATTTTAGGATGA

Coding sequence (CDS)

ATGGGAGGAGAGGTGCCGCATAAATTCAAAATATCAAACTTCCCGCAGTATGATGGAAAGAAAGATCTGAAACAGCACATAGATGCATACCTAACTTGGATGGATTTTCACAGGGCGAACGAAGCGACAAGGTGTCGAGTCTTTGCACTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCAAGATCCCACGAAAGTCAATTGATTCTTTTAGAGAGCTGGCCCGACCGTTTGTTACGCAATTCCTAGGAGCCCGTAGCCGACAAAAGCCTCAGATCAACCTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGGATTATATTAACAGATTTAGTTACGAAGTTTTGCAGGTGGAAGGTTACGATGACGGGGTTGCCTTGACCGCGATGATTTCAGGTTTGCAAGATGAAACGTTGCTCAACTCAATCGGAGAGAGCCAGCCACGAACATACGTGGAGTTTATGACCCGAGCACAAAGAGGAAAGAGGCACCAGGTCGAGGGAAGAGGCCGGAGTCGACTTGAGCACTCCTCGGCCAATGGCCAGGCCGACCAGAGGCCAAGGAGCCGCAGGGTCATGCGAAACCAAAAGCCAGATTCGACAGAAAAGTTGAGATTAGACCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCACAGAGACCACGGTCACACAACCCGGGAATGCATACAATTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCTCAAGGAGTTCGTGGGGAATGACAGAAGCAAGAGACCACTGCCAGTAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATACGAACAATTTTAGGATGA

Protein sequence

MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVEGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQADQRPRSRRVMRNQKPDSTEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG
Homology
BLAST of Lag0015450 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-53
Identity = 126/316 (39.87%), Postives = 171/316 (54.11%), Query Frame = 0

Query: 1   MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWF 60
           M  +VP KFK+    Q+D   D   H+DAY  WMD +  +EA RCRVF+ TL G AR WF
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  GKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQV 120
            ++ R SI SF+ LAR FVTQF+G R R +P   LLT+KQ   ESL+DY+ RF+ E LQV
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

Query: 121 EGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR---------GKRHQVEGR 180
           EG  D V+L A +SG++DE L  S G+  P T+ E ++RAQR          KR     R
Sbjct: 305 EGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKR 364

Query: 181 GRSRLEHSSANGQADQRPRSRRVMRNQKPDSTEK-------------------------- 240
              + E S    Q  +  +  R  +   P   EK                          
Sbjct: 365 TDPKRERSGDKPQGSRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPER 424

Query: 241 LRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQ 282
           ++    +R++ +YC+FHRDHGH T++C  L++E+E LIR GYLKE+V     + P     
Sbjct: 425 MKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYV-----EEPKATQN 484

BLAST of Lag0015450 vs. NCBI nr
Match: XP_030970001.1 (uncharacterized protein LOC115990293 [Quercus lobata])

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-45
Identity = 106/284 (37.32%), Postives = 153/284 (53.87%), Query Frame = 0

Query: 2   GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFG 61
           G  +P KFK+ +   YDG +D   HI  + T M      +   CRVF  TL G A+ WF 
Sbjct: 243 GHPLPSKFKMPSLDSYDGTRDPFDHIATFKTTMHLQEVPDEIMCRVFPTTLKGPAQVWFS 302

Query: 62  KIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVE 121
           KIP  S+ SF EL++ FV  F+G +  ++   NLLT++QG  ESL+ +I RF+ E L V+
Sbjct: 303 KIPPNSVSSFEELSKLFVNNFIGGQRHKRSSSNLLTIEQGENESLRSFITRFNIEALSVD 362

Query: 122 GYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSA 181
             DD + L A  +G+  +  ++ + E +P++  E +  AQ                ++  
Sbjct: 363 EADDKLLLAAFHNGVNSDLFIHKLYEKEPQSMAELVHSAQ-------------NFMNAED 422

Query: 182 NGQADQRPRSRRVMRNQKPDST----EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRD 241
              A +R RS RV+   K D +    EK+R DP++ NRNKYC FHRDHGH T EC  L+ 
Sbjct: 423 AIIAKKRKRSERVLMQIKDDPSLKWLEKMRGDPNKCNRNKYCRFHRDHGHDTNECFDLKQ 482

Query: 242 EIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG 282
           +IE LIR+G L+ F+G D     +     +    P  EIR I+G
Sbjct: 483 QIENLIRQGKLRNFLGRDNRDEKMKGKMEESSRPPLGEIRVIIG 513

BLAST of Lag0015450 vs. NCBI nr
Match: XP_030955724.1 (uncharacterized protein LOC115977839 [Quercus lobata])

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-44
Identity = 113/303 (37.29%), Postives = 161/303 (53.14%), Query Frame = 0

Query: 2   GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFG 61
           G  +P KFK+ +   YDG +D   HI  + T M      +   CR F  TL G AR WF 
Sbjct: 38  GHPLPSKFKLPSLDSYDGTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGPARVWFS 97

Query: 62  KIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVE 121
           KIP  S+ SF EL++ FV  F+G +  ++   +LLT++QG  ESL+ +I RF+ E L V+
Sbjct: 98  KIPPSSVSSFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENESLRSFITRFNREALSVD 157

Query: 122 GYDDGVALTAMISGLQDETLLNSIGESQPRTYVEF-MTRAQRGKRHQV----------EG 181
             DD + L A  +G+  +  ++ + E +P+T  E    RA+R + H V          +G
Sbjct: 158 EVDDKLLLAAFHNGINSDLFIHKLYEKEPQTMAELKRKRAERMEAHPVRHSEQAPRPKKG 217

Query: 182 RGRSRLEHS---------SANGQADQRPRSRRVMRNQKPDS---TEKLRLDPDRRNRNKY 241
           R   R E           S N      P ++ +M+ +   S    EK++ DP++RN+NKY
Sbjct: 218 RTEDRKERDGRKTGPLGRSQNYTPLNAPLNQVLMQIKDDPSLKWPEKMKGDPNKRNKNKY 277

Query: 242 CMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRT 282
           C FHRDHGH T EC  L+ +IE LIR+G LK FVG DR+   L     +    P  EIR 
Sbjct: 278 CRFHRDHGHDTDECYDLKQQIENLIRQGKLKHFVGRDRTDEKLKGKMEESSRPPLGEIRI 337

BLAST of Lag0015450 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-43
Identity = 110/318 (34.59%), Postives = 168/318 (52.83%), Query Frame = 0

Query: 1   MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWF 60
           M  + P +F +     YDG++D  +H++ Y T M+   A++A  CR F LTL G AR+WF
Sbjct: 182 MVAKYPPRFHLPQMEPYDGQRDPTEHLELYRTLMEVQGASQAILCRAFPLTLVGAARRWF 241

Query: 61  GKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQV 120
            ++   SI SF +L+R F + F  AR R KP   LLTVKQ   E+L+DYI R++ E+ QV
Sbjct: 242 RRLQPHSISSFGDLSREFTSHFRSARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQV 301

Query: 121 EGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSS 180
           +GYDDG+AL+ ++ GL+   L  S+ +  P +Y E + RA++    +   + R++ +  S
Sbjct: 302 DGYDDGIALSGIMEGLRMGKLWWSVSKRPPTSYSEMLARAEKYANAEERFKNRNQEKGES 361

Query: 181 ANGQA---DQR-------------------------------------------PRSRRV 240
             G+    DQR                                           PR + +
Sbjct: 362 TKGKKKKDDQRERRVVRPDQSLRRNQFRPGERSEVRDTRPRLASQFTNFTELNTPREQIL 421

Query: 241 MRNQKPD---STEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEF 268
           M+ + P    +   ++ +P RRN NKYC FH+DHGH T EC +L+++IE+L+R+G L+E+
Sbjct: 422 MQVRNPTLFRTPPPMKTNPSRRNPNKYCHFHKDHGHDTSECFELKEQIESLVRQGQLQEY 481

BLAST of Lag0015450 vs. NCBI nr
Match: XP_030924206.1 (uncharacterized protein LOC115951026 [Quercus lobata])

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-43
Identity = 103/284 (36.27%), Postives = 145/284 (51.06%), Query Frame = 0

Query: 2   GGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFG 61
           G  +P KFK+S+   YDG +D   HI  + T M      +   CR F  TL G AR WF 
Sbjct: 143 GHPLPSKFKLSSLDSYDGTRDPFDHIATFKTTMHLQGVPDEIMCRAFPTTLKGPARVWFS 202

Query: 62  KIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVE 121
           KIP  S+ SF EL++ FV  F+G +  ++   +LLT++QG  ESL+ +I RF+ E L V+
Sbjct: 203 KIPPSSVSSFEELSKLFVNNFIGGQRHKRSSSSLLTIEQGENESLRSFITRFNREALSVD 262

Query: 122 GYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSA 181
             DD + L A  +G+  +  ++ + E +P+T  E                          
Sbjct: 263 EVDDKLLLAAFHNGINSDLFIHKLYEKEPQTMAEL------------------------- 322

Query: 182 NGQADQRPRSRRVMRNQKPDST----EKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRD 241
                       V+   K D +    EK++ DP++RN+NKYC FHRDHGH T EC  L+ 
Sbjct: 323 ------------VLMQIKDDPSLKWPEKMKGDPNKRNKNKYCRFHRDHGHDTDECFDLKQ 382

Query: 242 EIEALIREGYLKEFVGNDRSKRPLPVDQGKGGANPPLEIRTILG 282
           +IE LIR+G LK FVG DR+   L     +    P  EIR I+G
Sbjct: 383 QIENLIRQGKLKHFVGRDRTDEKLKGKMEESSRPPLGEIRIIVG 389

BLAST of Lag0015450 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 126/316 (39.87%), Postives = 171/316 (54.11%), Query Frame = 0

Query: 1   MGGEVPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWF 60
           M  +VP KFK+    Q+D   D   H+DAY  WMD +  +EA RCRVF+ TL G AR WF
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  GKIPRKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQV 120
            ++ R SI SF+ LAR FVTQF+G R R +P   LLT+KQ   ESL+DY+ RF+ E LQV
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

Query: 121 EGYDDGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR---------GKRHQVEGR 180
           EG  D V+L A +SG++DE L  S G+  P T+ E ++RAQR          KR     R
Sbjct: 305 EGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKR 364

Query: 181 GRSRLEHSSANGQADQRPRSRRVMRNQKPDSTEK-------------------------- 240
              + E S    Q  +  +  R  +   P   EK                          
Sbjct: 365 TDPKRERSGDKPQGSRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPER 424

Query: 241 LRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPVDQ 282
           ++    +R++ +YC+FHRDHGH T++C  L++E+E LIR GYLKE+V     + P     
Sbjct: 425 MKASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYV-----EEPKATQN 484

BLAST of Lag0015450 vs. ExPASy TrEMBL
Match: A0A2N9GC82 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24997 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40
Identity = 105/273 (38.46%), Postives = 141/273 (51.65%), Query Frame = 0

Query: 5   VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIP 64
           +P KF++     +DG KDL  H++++ T M      +   CR F  TL G AR WF K+ 
Sbjct: 326 LPTKFRMPTLETFDGSKDLLDHLESFKTMMCLQGVPDEIMCRAFPTTLKGPARIWFKKLT 385

Query: 65  RKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVEGYD 124
             S+ SF +L+R F   F+G +   +P  +LL V+Q   E+L+ Y+ RF+ E L V+G D
Sbjct: 386 PNSVGSFAQLSRLFFNHFIGGQRYGRPTTHLLNVRQKEGETLRSYLTRFNKETLLVDGAD 445

Query: 125 DGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRGKRHQVEGRGRSRLEHSSANGQ 184
           D V LTA ISGLQ    L S+ +  P T  E M  AQR             +    A   
Sbjct: 446 DKVVLTAFISGLQSRDFLFSVYKDPPSTMAEMMYEAQR------------HMNGEEALQA 505

Query: 185 ADQRPRSRRVMRNQKP-DSTEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALI 244
            DQ    +R   +  P     KL  DPD+R R+KYC FHRDHGH T +C  L+ +IE LI
Sbjct: 506 RDQTSGKKRKWEHDDPLKWPGKLLTDPDKRPRDKYCRFHRDHGHNTEDCYDLKRQIEELI 565

Query: 245 REGYLKEFV-GNDRSKRPLPVDQGKGGANPPLE 276
           ++G L+ FV    R  RP    QG     PP E
Sbjct: 566 KQGKLQRFVERGQREGRP----QGARQQRPPAE 582

BLAST of Lag0015450 vs. ExPASy TrEMBL
Match: A0A2N9GH90 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26844 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 110/292 (37.67%), Postives = 153/292 (52.40%), Query Frame = 0

Query: 5    VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIP 64
            +P KF++ +   +DG KD   H++++ T M      +   CR F  TL G AR WF KI 
Sbjct: 1138 LPSKFRMPSLDTFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKIT 1197

Query: 65   RKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVEGYD 124
              S+ SF +L+R F   F+GA+   +P  +LL +KQ   E+L+ Y+ RF+ E L V+G D
Sbjct: 1198 PDSVGSFAQLSRLFFNHFIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGAD 1257

Query: 125  DGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRG--------KRHQVEGRGRSRL 184
            D V LTA ISGLQ    L S+ +  P T  E M  AQR          R Q  G+ R R 
Sbjct: 1258 DKVVLTAFISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTVGKKRKRH 1317

Query: 185  EHSSANGQADQ--------RPRSRRVMRNQKPDSTE---KLRLDPDRRNRNKYCMFHRDH 244
            E  +  G  ++         P     M+ +   + +   KL  DPD+R R+KYC FHRDH
Sbjct: 1318 EDRNGRGFNERFNHFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDH 1377

Query: 245  GHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLEI 277
            GH T +C  L+ +IE LI++G L+ FV    R  RP    QG     PP+E+
Sbjct: 1378 GHNTEDCYDLKRQIEELIKQGKLQRFVERGQREGRP----QGPRQQRPPVEV 1425

BLAST of Lag0015450 vs. ExPASy TrEMBL
Match: A0A2N9EKS3 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3213 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 110/292 (37.67%), Postives = 153/292 (52.40%), Query Frame = 0

Query: 5   VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIP 64
           +P KF++ +   +DG KD   H++++ T M      +   CR F  TL G AR WF KI 
Sbjct: 278 LPSKFRMPSLDTFDGSKDPLDHLESFKTVMCLQGVPDEIMCRAFPTTLKGPARVWFKKIT 337

Query: 65  RKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVEGYD 124
             S+ SF +L+R F   F+GA+   +P  +LL +KQ   E+L+ Y+ RF+ E L V+G D
Sbjct: 338 PDSVGSFAQLSRLFFNHFIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGAD 397

Query: 125 DGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQRG--------KRHQVEGRGRSRL 184
           D V LTA ISGLQ    L S+ +  P T  E M  AQR          R Q  G+ R R 
Sbjct: 398 DKVVLTAFISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTVGKKRKRH 457

Query: 185 EHSSANGQADQ--------RPRSRRVMRNQKPDSTE---KLRLDPDRRNRNKYCMFHRDH 244
           E  +  G  ++         P     M+ +   + +   KL  DPD+R R+KYC FHRDH
Sbjct: 458 EDRNGRGFNERFNHFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDH 517

Query: 245 GHTTRECIQLRDEIEALIREGYLKEFV-GNDRSKRPLPVDQGKGGANPPLEI 277
           GH T +C  L+ +IE LI++G L+ FV    R  RP    QG     PP+E+
Sbjct: 518 GHNTEDCYDLKRQIEELIKQGKLQRFVERGQREGRP----QGPRQQRPPVEV 565

BLAST of Lag0015450 vs. ExPASy TrEMBL
Match: A0A6J1D9W7 (uncharacterized protein LOC111018708 OS=Momordica charantia OX=3673 GN=LOC111018708 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.7e-40
Identity = 104/318 (32.70%), Postives = 163/318 (51.26%), Query Frame = 0

Query: 5   VPHKFKISNFPQYDGKKDLKQHIDAYLTWMDFHRANEATRCRVFALTLTGLARQWFGKIP 64
           +P KFK      YDG KD K +++ +   MDFH A++A +CR F + LTG AR W+ ++P
Sbjct: 67  IPPKFKAPTVKPYDGSKDPKDYVEVFEGLMDFHAASDAIKCRAFQIALTGSARLWYRRLP 126

Query: 65  RKSIDSFRELARPFVTQFLGARSRQKPQINLLTVKQGPRESLKDYINRFSYEVLQVEGYD 124
            +SI ++ +L R F+ QF   +  +K + +L T++Q    +L++Y+ RF  E L+V    
Sbjct: 127 ARSISTYSQLRREFLAQFSSRQYGKKTETHLATIRQKEGGTLREYVTRFQEEQLKVAHCS 186

Query: 125 DGVALTAMISGLQDETLLNSIGESQPRTYVEFMTRAQR------------GKRHQVEGRG 184
           D  A+   ++GL DE L   +GE  P T+ E + +A++            G+  +  GRG
Sbjct: 187 DDSAMCYFLTGLADEALTVKLGEKAPTTFAEVLQKAKKVIDGQELLRTKTGRPDRKIGRG 246

Query: 185 RS--------------------RLEHSSA-NGQADQRPRSR---------RVMRNQKPDS 244
           RS                    R E+  A +G    RP  R          ++ N +   
Sbjct: 247 RSGKDVERADPKSKDKGSFSSGRAEYRRAESGPTKSRPYERFTPTTIPISEILTNIEESG 306

Query: 245 -------TEKLRLDPDRRNRNKYCMFHRDHGHTTRECIQLRDEIEALIREGYLKEFVGND 274
                   EKLR  P+RR+++KYC FHR+HGH T +C +L+ +IE LI++GY K+FVG  
Sbjct: 307 MEKLLKRPEKLRGAPERRSKDKYCRFHREHGHNTSDCWELKRQIEDLIQDGYFKKFVGKP 366

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.13.5e-5339.87uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_030970001.12.7e-4537.32uncharacterized protein LOC115990293 [Quercus lobata][more]
XP_030955724.11.3e-4437.29uncharacterized protein LOC115977839 [Quercus lobata][more]
XP_024041095.11.5e-4334.59uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_030924206.11.5e-4336.27uncharacterized protein LOC115951026 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWY01.7e-5339.87uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A2N9GC822.2e-4038.46Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24997 PE=4 SV=1[more]
A0A2N9GH902.8e-4037.67Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26844 PE=4 SV=1[more]
A0A2N9EKS32.8e-4037.67Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3213 PE=4 SV=1[more]
A0A6J1D9W73.7e-4032.70uncharacterized protein LOC111018708 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 47..138
e-value: 5.1E-12
score: 45.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015450.1Lag0015450.1mRNA