Lag0015442 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015442
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 13173802 .. 13174110 (-)
RNA-Seq Expression	Lag0015442
Synteny	Lag0015442

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTGAAGTTGAATCTGATGCCTTGGAGCTCGTCCGCTGCTTGAACAAGGATTGTGTAGATTTGTATGAGATCAAGGTTTTTGTTGAAGCCATTTTAGATGTGGCTCCCAAATTAGGAGTGCTATCTTTCAAGCACTGCCCTAGAAATCGAAATGGGGTGGCTCACTCCATTGCTCGTCAGGACACGTTATGTTATTCTGATTCTAGTTTTTTTGATGATGTGCAGGGACTCCTTCCATGCTGGAAGGTCTGTATTGGTTTTGGTCCTCTTACCCCCCTCTTGGTTGATTTTCTTAATTGGTAA

mRNA sequence

ATGGAGCTTGAAGTTGAATCTGATGCCTTGGAGCTCGTCCGCTGCTTGAACAAGGATTGTGTAGATTTGTATGAGATCAAGGTTTTTGTTGAAGCCATTTTAGATGTGGCTCCCAAATTAGGAGTGCTATCTTTCAAGCACTGCCCTAGAAATCGAAATGGGGTGGCTCACTCCATTGCTCGTCAGGACACGTTATGTTATTCTGATTCTAGTTTTTTTGATGATGTGCAGGGACTCCTTCCATGCTGGAAGGTCTGTATTGGTTTTGGTCCTCTTACCCCCCTCTTGGTTGATTTTCTTAATTGGTAA

Coding sequence (CDS)

ATGGAGCTTGAAGTTGAATCTGATGCCTTGGAGCTCGTCCGCTGCTTGAACAAGGATTGTGTAGATTTGTATGAGATCAAGGTTTTTGTTGAAGCCATTTTAGATGTGGCTCCCAAATTAGGAGTGCTATCTTTCAAGCACTGCCCTAGAAATCGAAATGGGGTGGCTCACTCCATTGCTCGTCAGGACACGTTATGTTATTCTGATTCTAGTTTTTTTGATGATGTGCAGGGACTCCTTCCATGCTGGAAGGTCTGTATTGGTTTTGGTCCTCTTACCCCCCTCTTGGTTGATTTTCTTAATTGGTAA

Protein sequence

MELEVESDALELVRCLNKDCVDLYEIKVFVEAILDVAPKLGVLSFKHCPRNRNGVAHSIARQDTLCYSDSSFFDDVQGLLPCWKVCIGFGPLTPLLVDFLNW

Homology

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BLAST of Lag0015442 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 1   MELEVESDALELVRCLNKDCVDLYEIKVFVEAILDVAPKLGVLSFKHCPRNRNGVAHSIA 60
           +++E+ESD LE+V  +NK  + L E+ + VE I      L +  FKH P   NGVAH IA
Sbjct: 133 IKIEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGFKHLPMKANGVAHGIA 192

Query: 61  RQ 63
           R+
Sbjct: 193 RR 194

The following BLAST results are available for this feature:

BLAST of Lag0015442 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148549.1	4.2e-04	43.55	uncharacterized protein LOC111017181 [Momordica charantia]	[more]

BLAST of Lag0015442 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..61 e-value: 9.1E-8 score: 32.0
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 2..61 e-value: 8.08331E-10 score: 50.0052

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015442.1	Lag0015442.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity