Lag0015418 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015418
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr12: 12654418 .. 12654726 (-)
RNA-Seq ExpressionLag0015418
SyntenyLag0015418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTCGCTCCTACTCGATGAAAGCTCACCAAAGTTAGAGTTTACAGAGAAAGAGGCTGCGGGGATACGTCATCCGCACAACGATGCGCTGGTAGTCACTTTAACGATTGCCAACGCAAAAGTTCACCGGATCCTCGTTGATGGGGGGAGTTCTGCTGATGTGCTCTCAACCACTGCGTTTGACGCCATGAAGCTGGGAAGCGGTCGCCTGAGGCCGAGCCTCACGCCGCTGGTGGGGTTTGGCGGAGAAAAAGTAAGCCCAAGAGGAAGCGTCGAACTGCCAATGACGTTTGGGGAAGGACTGTAG

mRNA sequence

ATGTACTCGCTCCTACTCGATGAAAGCTCACCAAAGTTAGAGTTTACAGAGAAAGAGGCTGCGGGGATACGTCATCCGCACAACGATGCGCTGGTAGTCACTTTAACGATTGCCAACGCAAAAGTTCACCGGATCCTCGTTGATGGGGGGAGTTCTGCTGATGTGCTCTCAACCACTGCGTTTGACGCCATGAAGCTGGGAAGCGGTCGCCTGAGGCCGAGCCTCACGCCGCTGGTGGGGTTTGGCGGAGAAAAAGTAAGCCCAAGAGGAAGCGTCGAACTGCCAATGACGTTTGGGGAAGGACTGTAG

Coding sequence (CDS)

ATGTACTCGCTCCTACTCGATGAAAGCTCACCAAAGTTAGAGTTTACAGAGAAAGAGGCTGCGGGGATACGTCATCCGCACAACGATGCGCTGGTAGTCACTTTAACGATTGCCAACGCAAAAGTTCACCGGATCCTCGTTGATGGGGGGAGTTCTGCTGATGTGCTCTCAACCACTGCGTTTGACGCCATGAAGCTGGGAAGCGGTCGCCTGAGGCCGAGCCTCACGCCGCTGGTGGGGTTTGGCGGAGAAAAAGTAAGCCCAAGAGGAAGCGTCGAACTGCCAATGACGTTTGGGGAAGGACTGTAG

Protein sequence

MYSLLLDESSPKLEFTEKEAAGIRHPHNDALVVTLTIANAKVHRILVDGGSSADVLSTTAFDAMKLGSGRLRPSLTPLVGFGGEKVSPRGSVELPMTFGEGL
Homology
BLAST of Lag0015418 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 0

Query: 1   MYSLLLDESSPKLEFTEKEAAGIRHPHNDALVVTLTIANAKVHRILVDGGSSADVLSTTA 60
           +Y   + + S K+EF+E EA  + HPHNDALV+TL IANAKVHRILVDGGSS D+ S TA
Sbjct: 29  VYHAYVADRSMKIEFSEGEATHVLHPHNDALVITLKIANAKVHRILVDGGSSTDISSLTA 88

Query: 61  FDAMKLGSGRLRPSLTPLVGFGGEKVSPRGSVELPMTF 99
           + AM LG   L+ SLTPL+GFGGE++ P+G +ELP+TF
Sbjct: 89  YKAMDLGEEVLKSSLTPLIGFGGERIIPKGRIELPITF 126

BLAST of Lag0015418 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 9.6e-25
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 0

Query: 5   LLDESSPKLEFTEKEAAGIRHPHNDALVVTLTIANAKVHRILVDGGSSADVLSTTAFDAM 64
           +++E   KLEF+E EA  + HPHNDALV+TL IANAKVHRILVDGGSS  ++S TA+ AM
Sbjct: 100 IMEEQPAKLEFSEDEATHLFHPHNDALVITLKIANAKVHRILVDGGSSTYIISLTAYKAM 159

Query: 65  KLGSGRLRPSLTPLVGFGGEKVSPRGSVELPMTFGEG 102
            LG   L+ S  PLVGFGGE+V P G +ELP+ FG G
Sbjct: 160 DLGEKALKSSPVPLVGFGGERVIPEGRIELPVMFGSG 196

BLAST of Lag0015418 vs. NCBI nr
Match: XP_022154102.1 (uncharacterized protein LOC111021438 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-24
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MYSLLLDESSPKLEFTEKEAAGIRHPHNDALVVTLTIANAKVHRILVDGGSSADVLSTTA 60
           +Y   + + S K+EF++     + HPHNDAL++TL IANAKVHRILVDGGSSAD +S TA
Sbjct: 29  VYHAYVADWSTKIEFSKDVVTHLLHPHNDALLITLKIANAKVHRILVDGGSSADXISLTA 88

Query: 61  FDAMKLGSGRLRPSLTPLVGFGGEKVSPRGSVELPMTFGEG 102
           + AM LG   L+ SLTPL+GFGGE+V P G +ELP+TF  G
Sbjct: 89  YKAMDLGKEXLKSSLTPLIGFGGERVIPXGXIELPVTFESG 129

BLAST of Lag0015418 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 1   MYSLLLDESSPKLEFTEKEAAGIRHPHNDALVVTLTIANAKVHRILVDGGSSADVLSTTA 60
           +Y   +      +EF+E EA  + HPHNDALV+TL IAN KVHRILVDGGSSAD++S TA
Sbjct: 29  VYHAYITNQQVTIEFSENEATHLLHPHNDALVITLKIANVKVHRILVDGGSSADIISWTA 88

Query: 61  FDAMKLGSGRLRPSLTPLVGFGGEKVSPRGSVELPMTFGEG 102
           + AM LG   L+ S  PLVGFGGE+V   G +ELP+TFG G
Sbjct: 89  YKAMDLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSG 129

BLAST of Lag0015418 vs. NCBI nr
Match: XP_022158432.1 (uncharacterized protein LOC111024924 [Momordica charantia])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 0

Query: 1   MYSLLLDESSPKLEFTEKEAAGIRHPHNDALVVTLTIANAKVHRILVDGGSSADVLSTTA 60
           +Y   + + S K+EF+E EA  + H HNDALV+TL IANAKVHRILV+ GSSAD++S T 
Sbjct: 29  VYHAYVADRSTKIEFSEDEATHLLHSHNDALVITLKIANAKVHRILVNEGSSADIISLTT 88

Query: 61  FDAMKLGSGRLRPSLTPLVGFGGEKVSPRGSVELPMTFGEG 102
           + AM LG   L+ S  PL+GFGGE+V P G +ELP+TFG G
Sbjct: 89  YKAMDLGEKVLKSSPAPLIGFGGERVIPEGIIELPVTFGSG 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022146774.11.5e-2561.22uncharacterized protein LOC111015901 [Momordica charantia][more]
XP_022155873.19.6e-2561.86uncharacterized protein LOC111022886 [Momordica charantia][more]
XP_022154102.13.6e-2458.42uncharacterized protein LOC111021438 [Momordica charantia][more]
XP_022155186.11.1e-2358.42uncharacterized protein LOC111022321 [Momordica charantia][more]
XP_022158432.12.4e-2357.43uncharacterized protein LOC111024924 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015418.1Lag0015418.1mRNA