Lag0015417 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015417
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 12653329 .. 12653832 (+)
RNA-Seq ExpressionLag0015417
SyntenyLag0015417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGTCTCGGCCTTGGCGTGAGGCCGGGCATTTTTCCTACATGCTTGTTATTTTGCTCCTCAAGCTGCTGCATTCATCCTAGGGGTGTGTACACTCTTCTGGGAAAAAACTTGGGGAGGCCAAGGAAATTCTCGAGCCTCTCTCCAAGCACTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCAAGGGAATTCTCGAGCCTCTCTTCAAGCGTTGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGGCGTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCATCATGGTCATCCTAGGGTGTGTACACTCTTCTGGGGAAACGGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCTAG

mRNA sequence

ATGCTCGGTCTCGGCCTTGGCGTGAGGCCGGGCATTTTTCCTACATGCTTGTTATTTTGCTCCTCAAGCTGCTGCATTCATCCTAGGGGTGTGTACACTCTTCTGGGAAAAAACTTGGGGAGGCCAAGGAAATTCTCGAGCCTCTCTCCAAGCACTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCAAGGGAATTCTCGAGCCTCTCTTCAAGCGTTGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGGCGTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCATCATGGTCATCCTAGGGTGTGTACACTCTTCTGGGGAAACGGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCTAG

Coding sequence (CDS)

ATGCTCGGTCTCGGCCTTGGCGTGAGGCCGGGCATTTTTCCTACATGCTTGTTATTTTGCTCCTCAAGCTGCTGCATTCATCCTAGGGGTGTGTACACTCTTCTGGGAAAAAACTTGGGGAGGCCAAGGAAATTCTCGAGCCTCTCTCCAAGCACTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCAAGGGAATTCTCGAGCCTCTCTTCAAGCGTTGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGGCGTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCATCATGGTCATCCTAGGGTGTGTACACTCTTCTGGGGAAACGGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCGTTGTGGTCATCCTAG

Protein sequence

MLGLGLGVRPGIFPTCLLFCSSSCCIHPRGVYTLLGKNLGRPRKFSSLSPSTVVIPGVRTLFWGKGLGRPREFSSLSSSVVVILGVRTLFWGKGVGRPRKFPSLSSSVVVIPGVRTLFWGKGLGRPRKFPSLSSSIMVILGCVHSSGETAWGGLGSSRASLQALWSS
Homology
The following BLAST results are available for this feature:
BLAST of Lag0015417 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0015417 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 64..76
e-value: 130.0
score: 3.4
coord: 92..104
e-value: 2.6
score: 13.0
coord: 120..132
e-value: 3.1
score: 12.5
coord: 36..48
e-value: 11.0
score: 9.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015417.1Lag0015417.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding