Lag0015391 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015391
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr12: 12061247 .. 12061628 (+)
RNA-Seq Expression	Lag0015391
Synteny	Lag0015391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGCCTGATTTTCTCTCTGCTCTCCACGTATTTCCTCTTTTGCTGCCTTTTCTTTGTCCTTTTGCTTCATCAATGGCGATAGATTTACAGAAAGATTTGAATTCTCTTATTTTTCTTCTTTCAAATATCTGCAATCTGGTGTCCATCCGTCTTGATTCTATGAATTTTATCCTTTGGAAGTTTCAGTTAACATCGATTCTTAAAGCTCACAAGTTATTTGGGTTTGTCGATGGCTCCTTACCTGTTCCTTCCCAGACGATTTGCCCTAGTCGAGATTCGTCTGTGTCCGCTGATGGTGATTCCTCATCTGTTGGTCCTCCTCCGCTGTTCCTCTTCCAAATCCTAAATATGATGATTGGATTGCAAAGGATCATGCCTTGA

mRNA sequence

TCGCCTGATTTTCTCTCTGCTCTCCACGTATTTCCTCTTTTGCTGCCTTTTCTTTGTCCTTTTGCTTCATCAATGGCGATAGATTTACAGAAAGATTTGAATTCTCTTATTTTTCTTCTTTCAAATATCTGCAATCTGGTGTCCATCCGTCTTGATTCTATGAATTTTATCCTTTGGAAGTTTCAGTTAACATCGATTCTTAAAGCTCACAAGTTATTTGGGTTTGTCGATGGCTCCTTACCTGTTCCTTCCCAGACGATTTGCCCTAGTCGAGATTCGTCTGTGTCCGCTGATGGTGATTCCTCATCTGTTGGTCCTCCTCCGCTGTTCCTCTTCCAAATCCTAAATATGATGATTGGATTGCAAAGGATCATGCCTTGA

Coding sequence (CDS)

GTCGCCTGATTTTCTCTCTGCTCTCCACGTATTTCCTCTTTTGCTGCCTTTTCTTTGTCCTTTTGCTTCATCAATGGCGATAGATTTACAGAAAGATTTGAATTCTCTTATTTTTCTTCTTTCAAATATCTGCAATCTGGTGTCCATCCGTCTTGATTCTATGAATTTTATCCTTTGGAAGTTTCAGTTAACATCGATTCTTAAAGCTCACAAGTTATTTGGGTTTGTCGATGGCTCCTTACCTGTTCCTTCCCAGACGATTTGCCCTAGTCGAGATTCGTCTGTGTCCGCTGATGGTGATTCCTCATCTGTTGGTCCTCCTCCGCTGTTCCTCTTCCAAATCCTAAATATGATGATTGGATTGCAAAGGATCATGCCTTGA

Protein sequence

SPDFLSALHVFPLLLPFLCPFASSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPSRDSSVSADGDSSSVGPPPLFLFQILNMMIGLQRIMP

Homology

[Close]

BLAST of Lag0015391 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-16
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 4  FLSALHVFPLLLPFLCP-FA-SSMAIDLQKDLNSLIFLLSNICNLVSIRLDSMNFILWKF 63
          FLS    FP +  F    FA +S + + +KDL+S IFLLSNICNLVSIRLDS +FILWKF
Sbjct: 2  FLSFTFQFPRVSFFRSSVFAMTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKF 61

Query: 64 QLTSILKAHKLFGFVDGSLPVPSQTICPSRDS 94
          QLT+ILKAHKLFGF+DGS+  PSQ +  S ++
Sbjct: 62 QLTAILKAHKLFGFIDGSVSAPSQFLASSSET 93

[Close]

BLAST of Lag0015391 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 31 KDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTICPS 90
          KDL+S IFLLSNICNLVS+RLDS NF+LWKFQLT+ILKAHKL+GF+DGS P P++ +   
Sbjct: 9  KDLSSPIFLLSNICNLVSLRLDSSNFVLWKFQLTAILKAHKLYGFIDGSTPKPAEFLVSX 68

Query: 91 RDSSVS 97
           D S S
Sbjct: 69 XDXSSS 74

[Close]

BLAST of Lag0015391 vs. NCBI nr
Match: XP_022152754.1 (uncharacterized protein LOC111020396 isoform X4 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 29  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTIC 88
           ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + + 
Sbjct: 6   IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 89  PSR-DSSVSADGDSSSV 105
            S  +SS S D  S  +
Sbjct: 66  ASTLESSSSIDSASQMI 82

[Close]

BLAST of Lag0015391 vs. NCBI nr
Match: XP_022152753.1 (uncharacterized protein LOC111020396 isoform X3 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 29  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTIC 88
           ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + + 
Sbjct: 6   IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 89  PSR-DSSVSADGDSSSV 105
            S  +SS S D  S  +
Sbjct: 66  ASTLESSSSIDSASQMI 82

[Close]

BLAST of Lag0015391 vs. NCBI nr
Match: XP_022152751.1 (uncharacterized protein LOC111020396 isoform X1 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 29  LQKDLNSLIFLLSNICNLVSIRLDSMNFILWKFQLTSILKAHKLFGFVDGSLPVPSQTIC 88
           ++ DLNS IFLLSNICNL+SIRLDS NFILWKFQLT+ILKAHKLF F+DGS   P + + 
Sbjct: 6   IENDLNSPIFLLSNICNLISIRLDSTNFILWKFQLTAILKAHKLFSFIDGSSTPPEKFVA 65

Query: 89  PSR-DSSVSADGDSSSV 105
            S  +SS S D  S  +
Sbjct: 66  ASTLESSSSIDSASQMI 82

The following BLAST results are available for this feature:

BLAST of Lag0015391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150845.1	2.6e-16	60.87	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
XP_022158689.1	4.5e-16	69.70	uncharacterized protein LOC111025150 [Momordica charantia]	[more]
XP_022152754.1	1.3e-15	63.64	uncharacterized protein LOC111020396 isoform X4 [Momordica charantia]	[more]
XP_022152753.1	1.3e-15	63.64	uncharacterized protein LOC111020396 isoform X3 [Momordica charantia]	[more]
XP_022152751.1	1.3e-15	63.64	uncharacterized protein LOC111020396 isoform X1 [Momordica charantia]	[more]

BLAST of Lag0015391 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 45..83 e-value: 2.1E-10 score: 40.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015391.1	Lag0015391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding