Lag0015360 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015360
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein MNN4-like
Locationchr12: 11488280 .. 11489134 (+)
RNA-Seq ExpressionLag0015360
SyntenyLag0015360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGTTTCTCCTCAGTCGATATTAACAGGGTGTACAGGATCAAAGCACCCTTGAACCCAAGAGGGAATGATGTGATTAGGAACCCTTCGGCCAAGCAAATGAAGGAAGCTTTGAAACTTGTGGCCAACAAGGGGGTTCAATGGAAAGAATCACAGATAAAAGTGAAGTCGTTAGTGTCAAGCGATCTAAAGCCAGAATCGGCAGCTTGGCTTCACTTCATCAAAAACCGCTTGATGCCAACCACCCACGACAGCACAATTTTAGTGGATAGAGTTATGCAACTCTATTGCCTTATGAAGGGGTTGGAGATCAATGTAGGGAGCATTATCAAGGAAGAGATTTTAGCCTGTGGGAGAAAGCGAGCATGCAAGCTTTTCTTTGGATCACTCATCACCCAGCTTTGCCAAAGGGTGAAGATCGTTCTGGGCAAGGACGAGGAGCTCACTTTTTCAAGTCGACCATTGGCATGTCCTTGATCGGAAAGCTCCAACAGAACAATATCCAGAGGAAAGACAAAGCCTCTACATCTCAGGCTACTACTCCACCTACAGGGCCAAATGTAGCATCTTCATCCCAGCACACTCCTTTTACAGGGCCTTCACCAACATCAGAAGCCCTAGGCATGGTCTACCGCCAGTTAGATCAAATCAGGGAAAACCCATAAGACGTACTAGGTATATGCAAAGGAGAGGGATGAAGCTATTAGAGAGTTCTATCTCTCTATCGCCCCAAGCATTGCTCCGGTCTTTCCCAATTTTCCTCAGTCGCTGCTGCCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGATGAGAAAGAGAGTTCCTTGGACGAGGAATAG

mRNA sequence

ATGGTCAGTTTCTCCTCAGTCGATATTAACAGGGTGTACAGGATCAAAGCACCCTTGAACCCAAGAGGGAATGATGTGATTAGGAACCCTTCGGCCAAGCAAATGAAGGAAGCTTTGAAACTTGTGGCCAACAAGGGGGTTCAATGGAAAGAATCACAGATAAAAGTGAAGTCGTTAGTGTCAAGCGATCTAAAGCCAGAATCGGCAGCTTGGCTTCACTTCATCAAAAACCGCTTGATGCCAACCACCCACGACAGCACAATTTTAGTGGATAGAGTTATGCAACTCTATTGCCTTATGAAGGGGTTGGAGATCAATGGTGAAGATCGTTCTGGGCAAGGACGAGGAGCTCACTTTTTCAAGTCGACCATTGGCATGTCCTTGATCGGAAAGCTCCAACAGAACAATATCCAGAGGAAAGACAAAGCCTCTACATCTCAGGCTACTACTCCACCTACAGGGCCAAATGTAGCATCTTCATCCCAGCACACTCCTTTTACAGGGCCTTCACCAACATCAGAAGCCCTAGGCATGTCGCTGCTGCCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGATGAGAAAGAGAGTTCCTTGGACGAGGAATAG

Coding sequence (CDS)

ATGGTCAGTTTCTCCTCAGTCGATATTAACAGGGTGTACAGGATCAAAGCACCCTTGAACCCAAGAGGGAATGATGTGATTAGGAACCCTTCGGCCAAGCAAATGAAGGAAGCTTTGAAACTTGTGGCCAACAAGGGGGTTCAATGGAAAGAATCACAGATAAAAGTGAAGTCGTTAGTGTCAAGCGATCTAAAGCCAGAATCGGCAGCTTGGCTTCACTTCATCAAAAACCGCTTGATGCCAACCACCCACGACAGCACAATTTTAGTGGATAGAGTTATGCAACTCTATTGCCTTATGAAGGGGTTGGAGATCAATGGTGAAGATCGTTCTGGGCAAGGACGAGGAGCTCACTTTTTCAAGTCGACCATTGGCATGTCCTTGATCGGAAAGCTCCAACAGAACAATATCCAGAGGAAAGACAAAGCCTCTACATCTCAGGCTACTACTCCACCTACAGGGCCAAATGTAGCATCTTCATCCCAGCACACTCCTTTTACAGGGCCTTCACCAACATCAGAAGCCCTAGGCATGTCGCTGCTGCCCCAAGAAGAAGAGGATTCTGATGAAGAGGAAGATGAAGAGAATGATGAGAAAGAGAGTTCCTTGGACGAGGAATAG

Protein sequence

MVSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLVSSDLKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEINGEDRSGQGRGAHFFKSTIGMSLIGKLQQNNIQRKDKASTSQATTPPTGPNVASSSQHTPFTGPSPTSEALGMSLLPQEEEDSDEEEDEENDEKESSLDEE
Homology
BLAST of Lag0015360 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-15
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = 0

Query: 1   MVSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLV 60
           +V FS+ DIN +Y++K   +  GN +I +P  ++M++AL+ +   G QW  S   +K+L 
Sbjct: 237 IVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIKTLA 296

Query: 61  SSDLKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEIN 107
           SS L PE+  W++ +K R++PT+HD T+  DRVM  YC+  G+ I+
Sbjct: 297 SSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVMAAYCIACGILID 342

BLAST of Lag0015360 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-13
Identity = 41/105 (39.05%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 2   VSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLVS 61
           VSFS+ DIN +Y++K      GN +I +P+ +QM++AL+++   G++W  S   V +L S
Sbjct: 299 VSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDALQVLMQLGMKWSVSLKGVSTLAS 358

Query: 62  SDLKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEIN 107
             L  E   W++ +K RL+ TTHD T+  DRVM  YC+++ + I+
Sbjct: 359 KSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVMATYCIVRSIPID 403

BLAST of Lag0015360 vs. NCBI nr
Match: XP_038888747.1 (vicilin-like seed storage protein At2g18540 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-10
Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 2   VSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLVS 61
           V FS+ DIN +Y++K  L+  GN +I +P    M++ L+++   G QW  S   +K+L S
Sbjct: 224 VPFSARDINELYKMKDILDAPGNKIIDDPEEAHMEDTLRVLIQSGTQWSVSLKVIKTLAS 283

Query: 62  SDLKPESAAWLHFIKNRLMPTTHDSTI 89
           + L PE+  W++ +K RL+PT+H+ T+
Sbjct: 284 NKLLPEARLWVYLVKQRLIPTSHNKTV 310

BLAST of Lag0015360 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-09
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 0

Query: 1   MVSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLV 60
           MV+F    +N +Y ++         + + PS   M+ AL+ VA  G++W  + IK   L 
Sbjct: 190 MVNFGPKVVNVLYGLRQ--TTVEYPIFKEPSDIDMQNALERVAWPGMKWDITPIKKYQLF 249

Query: 61  SSDLKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEINGED 110
             +LK  ++ WL FIK  LMPT HD+TI ++R+M LYC+M+ + +N ++
Sbjct: 250 PHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYCIMEEIPLNVDE 296

BLAST of Lag0015360 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-09
Identity = 34/103 (33.01%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 4    FSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLVSSD 63
            +++++ NR   ++     RGN+++ +PS +Q++EA +L+      W  S +   SL   D
Sbjct: 1172 YTAINPNRGDEVRV----RGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLD 1231

Query: 64   LKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEIN 107
            +  ++  W++ +KNRL+PT++DS+I  +R M +Y L+KG+E N
Sbjct: 1232 INEQATVWMYVVKNRLIPTSYDSSIKRNRAMIVYILVKGVEFN 1270

BLAST of Lag0015360 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.5e-10
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 0

Query: 1   MVSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLV 60
           MV+F    +N +Y ++         + + PS   M+ AL+ VA  G++W  + IK   L 
Sbjct: 190 MVNFGPKVVNVLYGLRQ--TTVEYPIFKEPSDIDMQNALERVAWPGMKWDITPIKKYQLF 249

Query: 61  SSDLKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEINGED 110
             +LK  ++ WL FIK  LMPT HD+TI ++R+M LYC+M+ + +N ++
Sbjct: 250 PHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYCIMEEIPLNVDE 296

BLAST of Lag0015360 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 34/103 (33.01%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 4    FSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLVSSD 63
            +++++ NR   ++     RGN+++ +PS +Q++EA +L+      W  S +   SL   D
Sbjct: 1172 YTAINPNRGDEVRV----RGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLD 1231

Query: 64   LKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEIN 107
            +  ++  W++ +KNRL+PT++DS+I  +R M +Y L+KG+E N
Sbjct: 1232 INEQATVWMYVVKNRLIPTSYDSSIKRNRAMIVYILVKGVEFN 1270

BLAST of Lag0015360 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 0

Query: 2   VSFSSVDINRVYRIKAPLNPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVKSLVS 61
           VS+S   IN V+ +  P++   ++ I+N + + +   L+ VA  G +W  S     + + 
Sbjct: 109 VSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIR 168

Query: 62  SDLKPESAAWLHFIKNRLMPTTHDSTILVDRVMQLYCLMKGLEIN------GEDRSGQGR 121
           S L P +  W HF+K+RL+PTTH  T+  DR++ L+ ++ G  IN       E R+   R
Sbjct: 169 SALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAAR 228

Query: 122 --GAHFFKSTI 125
             GA FF S I
Sbjct: 229 KTGALFFPSLI 238

BLAST of Lag0015360 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-08
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 28  RNPSAKQMKEALKLVANKGVQWKESQIKVKSLVSSDLKPESAAWLHFIKNRLMPTTHDST 87
           R PS   M+EAL+ VA    +W  + IK   L   +L  E++ WL FIK +LMPT HD+T
Sbjct: 159 REPSDCDMQEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNT 218

Query: 88  ILVDRVMQLYCLMKGLEINGED 110
           I  +R+M LYC+M+ + ++ ++
Sbjct: 219 ISFERIMLLYCIMEEIPVDVDE 240

BLAST of Lag0015360 vs. ExPASy TrEMBL
Match: A0A0A0L2P0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-08
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 0

Query: 20  NPRGNDVIRNPSAKQMKEALKLVANKGVQWKESQIKVK-----SLVSSDLKPESAAWLHF 79
           N  G+D+++NP A+ ++ ALK V      W E+ + +       L+  +L  E+  WL F
Sbjct: 3   NEIGHDILKNPRAQDLESALKKVV-----WPETMLDITPTGKYQLLPHNLNTEAIIWLVF 62

Query: 80  IKNRLMPTTHDSTILVDRVMQLYCLMKGLEINGED 110
           +K ++MPT HD+ I ++RVM +YC+MK + +  +D
Sbjct: 63  VKKKIMPTRHDNNISMERVMLVYCIMKEILVEVKD 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904385.13.7e-1539.62uncharacterized protein LOC120090747 [Benincasa hispida][more]
XP_038876674.11.2e-1339.05chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
XP_038888747.16.1e-1037.93vicilin-like seed storage protein At2g18540 [Benincasa hispida][more]
KAA0048500.11.8e-0935.78protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... [more]
XP_022154847.18.7e-0933.01LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZE08.5e-1035.78Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A6J1DMT34.2e-0933.01LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia... [more]
A0A2P5BCG42.1e-0833.59Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A5D3DVQ63.6e-0841.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L2P03.6e-0834.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015360.1Lag0015360.1mRNA