Lag0015359 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015359
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCACTA en-spm transposon protein
Locationchr12: 11452731 .. 11455194 (+)
RNA-Seq ExpressionLag0015359
SyntenyLag0015359
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTACCCACCTACCGAACAAAAGAAGAAAACGAACTTGTAGCTGGCTGGAAACTCAACCCACGTGCAAGGGCTCGGAGAAACACGTACTGGGTGAGGATCTTGACGAACTCGCGTGGGTCAAGCTACGGACTGTGCAATGGAACGAGTAAGTAGTCGAATTGAGGAAAAACGTTCCGAAGAAACCAGGACTCACCAGAACACGCACGAGAGATCGTGATTTTGCTCGCATCTGGCCGAATCTGCGTCGGGAACTCGTTCACGAGGCGACGACGCGGGCGACGTCGTGCGGCAGTGGCGGCACGTCAAGGTAGTTGCGGCTGTGCGTGAAAGAGGAGGGACGAGATGGGGCTGGTGGCGGCTGTGCAAAAACGAGAGAAGAATGGAAGAGACGGTGGCTCAAACGAGAGAGAAAGGATGGTGGCTGCGTGAACAAGAAGGGGCTGGCGGCTGGGAGTGAAACGAAAAAGGAGAAAGGAAATCCTAGGGTCCTTTTCTCTCTTTTTTTTTTTTTTTTTTTTAGGATTGTTACCCTAACTTTTACTATTAAAGAATCCAATCAAGCCCTAATTCTTTTTTTTTCAACTTAGGGAGTCTTGGGTAAGTAAATATTTCCACGACTATGGTTTGAAAAACGACATTAAAAATTTAACTACGAATATAAAAAGCAACCCAATATATTCAAGGGACGAAATCTAACGTACCTGATAACGCAGGGCGTCACAGTGGGCCATATCCAAAGTTCGCCAAGATAAGGTACCCAGCTTTATCCCTATACTATAAACCATTCAGGCTATTTCTTGAACATTGATCCCCGTATGTCTCCACATACAGTTCAAGACTCATCCCTCAGCCTTGGATGTTTAGTTTATTAGATTAGGGTTATTTAGGAAAGATGTACATAATATAGACAATAACTCTTTATTGAAAAAATATCAAACAATACTTTATTTATGTTCGGTCAATTGTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAACTTCAATTCTTGATCCTTTTTGACGTTGTTTTCGAGTCTTGGGTGCTCCGCTTTGGTTTTTTCACTGTCTCGACATCCCATGGACTTTAGATGGATCAAAACCACGTTAATTTCCTCGAATTAACGTCAATTTGGAATATTGGCTTAAGCTCTTAACACCAAACACCTACAAAATATACAATTTAAGAAAGGTAATCATCGTAAAACTAGCGAGATTAAGAACATATAAATGGGGACAATTTGGTCCCATCATAGTCCTCTAAAAAAAGAATATTTTTATAAATTCTTTAACTGTATAAACTTTCCTTCTACATATAAATTTTTCAACATTGAAGACATTGAATTAATAATTTTATTGATGTTATTAGGTAAACAAATAATTGTTTTGTTGGCCTTTAATATAAAAGATTCTCATAAGTAAGGATTTCTACTTGTTTTCTTTCATAAGCTTTTTCTCATTAGATAAAAGTTATTCATAAAGTTAGTTACTAATTAAATTCTAAATGAAATGAACCATACAAAATTAATAAAAATAAGTTTAATTAAAAGCTAAGTTATGTTCTTAAATTTTTACAAACAACATAATATAGAAAAATATCCCTTTTTGTCGGTATATGTGGCGATTCTTTATCAAGGAATAGTTACAACAATCTAACTCTTAATACACAAACTTAGAGCTGAAGAGAAGTCATAAGTCATAAGTTACTAAGAAAGCTTCTAGCTCTATCCTTGAATAATTGGTTGTCTATAAATGAATGACTTGTTGGTTGATTTGACTCACCACTTTTTACTTTCTTCGTTTTCATTCATTTTACTTTTGAAGTTTCTGTGGTTGATTTGTTGCTATCATGCAGTTATGGTAGCATTTTACATGTATTTTGCTTGTAATCTTAGGGAAATTGGGCTAATCACGTGTTTGAAAAACTTGAAATGTGTTGTGTGATTAGGGATAATAACTATCCCTAATTGTCATACTCAAAAAACAACACCCACTGAAAACAAAAGACTTCAAATGTGGTGTATGATTAGGGATAATTACTATCCCTAATTGTCATGCACCAAGCAAATAATTGTACCAATGAATCCTAATTTTGACCCGTGTCTCGAGACCTCATGTCAGAACAACTATGGAAGCATAGTTTGAAAAATGTACAACCTTGAAACTAACCTTCTAAATACGGTGACAACTAGGAAGTAGTGCAAGTAGTTCAACATCGACATTTATGGGATCTACCAGGAGGGCAAAATGTAGATAACGATCAACTAGAGACATTAAAACCTGTTGGTGGAATAAGAGTCGATGAATCCATCGACGAGGATAACACTATGTTCAGGGATGGAGTTGAATTAACAATTTTAGATGAACAAGTTATTGAGGACGAAAATGGTGATGGTTTCATAAACGACGAGGACAAGGGCATAGAAATAATTGCATCCAGTTCGGACTAG

mRNA sequence

ATGGGCAGTACCCACCTACCGAACAAAAGAAGAAAACGAACTTGTAGCTGGCTGGAAACTCAACCCACGTGCAAGGGCTCGGAGAAACACGTACTGGGTGAGGATCTTGACGAACTCGCGTGGGTCAAGCTACGGACTGTGCAATGGAACGAAACACGCACGAGAGATCGTGATTTTGCTCGCATCTGGCCGAATCTGCGTCGGGAACTCGTTCACGAGGCGACGACGCGGGCGACGTCGTGCGGCAGTGGCGGCACGTCAAGGGCGTCACAGTGGGCCATATCCAAAGTTCGCCAAGATAAGGAAGTAGTGCAAGTAGTTCAACATCGACATTTATGGGATCTACCAGGAGGGCAAAATGTAGATAACGATCAACTAGAGACATTAAAACCTGTTGGTGGAATAAGAGTCGATGAATCCATCGACGAGGATAACACTATGTTCAGGGATGGAGTTGAATTAACAATTTTAGATGAACAAGTTATTGAGGACGAAAATGGTGATGGTTTCATAAACGACGAGGACAAGGGCATAGAAATAATTGCATCCAGTTCGGACTAG

Coding sequence (CDS)

ATGGGCAGTACCCACCTACCGAACAAAAGAAGAAAACGAACTTGTAGCTGGCTGGAAACTCAACCCACGTGCAAGGGCTCGGAGAAACACGTACTGGGTGAGGATCTTGACGAACTCGCGTGGGTCAAGCTACGGACTGTGCAATGGAACGAAACACGCACGAGAGATCGTGATTTTGCTCGCATCTGGCCGAATCTGCGTCGGGAACTCGTTCACGAGGCGACGACGCGGGCGACGTCGTGCGGCAGTGGCGGCACGTCAAGGGCGTCACAGTGGGCCATATCCAAAGTTCGCCAAGATAAGGAAGTAGTGCAAGTAGTTCAACATCGACATTTATGGGATCTACCAGGAGGGCAAAATGTAGATAACGATCAACTAGAGACATTAAAACCTGTTGGTGGAATAAGAGTCGATGAATCCATCGACGAGGATAACACTATGTTCAGGGATGGAGTTGAATTAACAATTTTAGATGAACAAGTTATTGAGGACGAAAATGGTGATGGTTTCATAAACGACGAGGACAAGGGCATAGAAATAATTGCATCCAGTTCGGACTAG

Protein sequence

MGSTHLPNKRRKRTCSWLETQPTCKGSEKHVLGEDLDELAWVKLRTVQWNETRTRDRDFARIWPNLRRELVHEATTRATSCGSGGTSRASQWAISKVRQDKEVVQVVQHRHLWDLPGGQNVDNDQLETLKPVGGIRVDESIDEDNTMFRDGVELTILDEQVIEDENGDGFINDEDKGIEIIASSSD
Homology
[Close]
BLAST of Lag0015359 vs. NCBI nr
Match: KAA0038099.1 (uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-05
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 0 

Query: 96  KVRQDKEVVQVVQHRHLWDLPGGQNVDNDQLETLKPVGGIRVDESIDEDNTMFRDGVELT 155
           K+R + ++VQ+VQ++ +WD+P  + V++D+ E L+    I VDESI  D    R  VE T
Sbjct: 768 KLRSNWKIVQIVQNKQVWDIPESEEVEDDRFELLEACSSIGVDESI-HDIPFCRGDVEPT 827

Query: 156 ILDEQVIEDEN----GDGFINDEDKGIEIIASSSD 187
           ++D +  E+++     D FINDE + ++  +S SD
Sbjct: 828 VVDHKETENQDQSRIDDDFINDETEQLQ--SSDSD 859

[Close]
BLAST of Lag0015359 vs. NCBI nr
Match: KAA0045598.1 (uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-05
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 0 

Query: 96  KVRQDKEVVQVVQHRHLWDLPGGQNVDNDQLETLKPVGGIRVDESIDEDNTMFRDGVELT 155
           K+R + ++VQ+VQ++ +WD+P  + V++D+ E L+    I VDESI  D    R  VE T
Sbjct: 601 KLRSNWKIVQIVQNKQVWDIPESEEVEDDRFELLEACSSIGVDESI-HDIPFCRGDVEPT 660

Query: 156 ILDEQVIEDEN----GDGFINDEDKGIEIIASSSD 187
           ++D +  E+++     D FINDE + ++  +S SD
Sbjct: 661 VVDHKETENQDQSRIDDDFINDETEQLQ--SSDSD 692

[Close]
BLAST of Lag0015359 vs. NCBI nr
Match: KAA0063930.1 (uncharacterized protein E6C27_scaffold616G00680 [Cucumis melo var. makuwa] >TYK11303.1 uncharacterized protein E5676_scaffold1827G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-05
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 102 EVVQVVQHRHLWDLPGGQNVDNDQLETLKPVGGIRVDESIDEDNTMFRDGVELTILDEQV 161
           +VVQV Q RH+WD P   +V+N+QL  L+ V G RVDE I ED+T++R  V  TI++  V
Sbjct: 47  KVVQVAQKRHIWDTPEVDDVENEQLNVLEIVVGHRVDEHI-EDDTLYRTDVNPTIVERSV 106

Query: 162 IEDENGDGFINDEDK 177
           +     D FI++ D+
Sbjct: 107 VHHIT-DDFIDNGDE 119

[Close]
BLAST of Lag0015359 vs. NCBI nr
Match: KAA0040145.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 0 

Query: 96  KVRQDKEVVQVVQHRHLWDLPGGQNVDNDQLETLKPVGGIRVDESIDEDNTMFRDGVELT 155
           K+R   ++VQ+VQ++ +WD+P  + V++D+ E L+    I VDESI  D    R  VE T
Sbjct: 548 KLRSIWKIVQIVQNKQVWDIPESEEVEDDKFELLEACSSIGVDESI-HDIPFCRGDVEPT 607

Query: 156 ILDEQVIEDEN----GDGFINDEDKGIEIIASSSD 187
           ++D +  E+++     D FINDE + ++  +S SD
Sbjct: 608 VVDHKETENQDQSRIDDDFINDETEQLQ--SSDSD 639

[Close]
BLAST of Lag0015359 vs. NCBI nr
Match: KAA0062811.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-04
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 0 

Query: 96  KVRQDKEVVQVVQHRHLWDLPGGQNVDNDQLETLKPVGGIRVDESIDEDNTMFRDGVELT 155
           K+R + ++VQ VQ++ +WD+P    V++D+ E L+    I VDESI  D    R  VE T
Sbjct: 447 KLRSNWKIVQTVQNKQVWDIPESGEVEDDRFELLEACSSIGVDESI-HDIPFCRGDVEST 506

Query: 156 ILDEQVIEDEN----GDGFINDEDKGIEIIASSSD 187
           ++D +  ++++     D FINDE + +E  +S SD
Sbjct: 507 VVDHEETDNQDQSRIDDDFINDETEQLE--SSDSD 538

The following BLAST results are available for this feature:
BLAST of Lag0015359 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038099.16.9e-0536.84uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa][more]
KAA0045598.16.9e-0536.84uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa][more]
KAA0063930.16.9e-0545.33uncharacterized protein E6C27_scaffold616G00680 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0040145.12.0e-0436.84transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa][more]
KAA0062811.12.6e-0436.84transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa][more]
BLAST of Lag0015359 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015359.1Lag0015359.1mRNA