Lag0015310 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015310
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr12: 10132210 .. 10137450 (-)
RNA-Seq ExpressionLag0015310
SyntenyLag0015310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGAAAACAACATTTCTCAATGGAGATTTAAAAGAGGAGATATATATGATACAACCCGAAGGCTTTGTAATTCCTGGTCAAGAAGACAAGGTATGTCAACTTAAAAAATCTCTTTATGGTCTTAAACAAGCTCCCAAACAATCGTATGAGAAATTTAATAGTACCTTAGTAAACAATGAGTTTATGGTGAATTCTTCCGACACATGTGTTTACTCGAAATTGTTTGGTGTTGATTATGTGATTATTTGCTTGTTTGTTGATGAAATGCTTATTTTCGGTACGAACTTACAAGTAATAAATGATACCAAGTTATTTTTATCCTCACACTTTGAGATGAAAGATTTAGGTGAGGCCGATGTGATACTTGGTGTTAAATTGAGAAAAACCGAAAATGGTATTCATTGAGTCAATCACACTATATTGAAAAGTTGCTAAAGAGATTTGATTGTTTTGATGATATACCTATAAGAACACCTTATGATGCTAGTATGAAACTTAAGAAAAATAAAGGGGATAGTGTCTCTCAATCTGAATATGCAAAAATTATAGGTAGCGTGATGTACCTGATGAATTATACTAGACCTGATATTGCATATGTTGTGAGTAGATTGAGTAGGTATACGCATAATCCCAATAAAGATCATTGGGTTGCACTTCATCGTTTGCACTTCATCCTAGAAAATCATTATCACTAAAGCAAATATATACACAACAGGCATGCAAGATATACATTAAGCACAAACGTTGGGCCGACGCACAGATGCTCAGGGCTATTCCTGCAGTATTAGAAGGTTATTGTGATGCAAACTGAGTAACTGATGAAGTAAGCTCAACTAACGGGTATGTGTTCGTTTTTGGAGGAGGAGCTACATCATTGAAATCTGAAAAGCAGACGTGCATTGTGCGATCCACCATGGAGTCAGAGTTTATAACTCTTGAGCTAGCAGAGCAAGAGGCGGAGTGGTTGAGAAGTTTACTTCAAGACGTACCACTGTGGGGGGCGTCTATTCCAGTCTCCTTGCACTGTGATTCACAAGCAGCATATACGCCTGAGACATGGAGTTGTGAAACAATTGTTGAAAAGTGGAATTATCTCCTTGGAGTATGTGAGGTCTGAGAGGAATTTGGCAGATCCTCTCACCAAAGGCCTAACAAGGAGAGTAATTCTAGAGCCCTCAGCAAGTATGGGACTCAAATTGTTGAAATGAGTCCATAACCCAGTATTTGGGTGGTCCAAGTACGGACTTGATGGACATATTTTGGTAAGTCTTCATAGCTCAAGATTTTGAGTGGTTTACTGAGGTAGACTTGATGAAGCATGACGTGATTGTGAAGGTGTGGCCGCCTTCTATGAAAGAGTGTAATGGATCTCTTTCTAGAGATTTCACAATGACCCAAGGTATTTTGTGCATGGCCTTAAAAATAACACTTGTTCTACTATTGTATCGCGGAATCAAGGGAAACTTGAGGATTCAAACGTGTTGTGGGGTTCTAAACCATGACTATTGAAAGTTCAAAAGGTAACTTACTTTCTCTATGATGGTTATTGCCTTACTTCACTATGCATTAATTCAAATCGAAAGATATTAATGCTTAAGTTTAATATCCTCCTTTGCTCAGAAAAATATTGCTTACCATCATTCGTGGGGGATTGTTGGGAATGACTAGCATATTTGCTTGTATATTTTGGCTTTTCCATGTTTTTCATTATGTTTGTCCCACATGGAAAGATTTGGAGTTGGGAGGAGTGTTTTTATACAATCATTTTTCCCTACTCTTGTAAGAGTGGTTAAAGGTGGTGCCTAAACCTTTTCCCACACATGCGCGCCGCCGCCGGTCGGACGCGTAATAAAGAGAGGGGTTTTATACCTACCTTTTTGCCAAAATATTTTTTAATCATTCTCGATATCCCATGTGTCGGCAGCGTCTACGTCCACGTGTCAATCCGGCGTCCACACACTCCAGCAGTTGACCAGTCCGTTCGTTGACCGAGTTTGGTGCCTTTTTTGCGTGCCTTTGACCGAGGAGTTGTTATGCGTGGACTCCTCCATGGCTGACACGTGGCAGCTGGACCCTGTTTTGTGGAAGACGGTTATTTTTTAAGCCTATAAAAGAAACCTCTGAGCATAGTGGAAAGTATCGAATTCATTTTCATTCTTCCTACTTTCTCTTCTGATTCCAATCATTCTCTCTCGAGTGCACGAACGAGGAGGGTGTTGTGTTAACCTTGGGGAGCAACCGACAATAACGATTTAGCACTGTGGTCGTGCCGAAATTACTTTCAAGGCAGTGGTTATCTCCACGACACAACAATTGTTTTTCCATTTTTCTACCTACAAAAGGGGTGGTGAACAGAAAAAGGAGAACCTTCTTTTTTTGTTTATGTGAAACAAACGAAGGGAAAGGAGAAAAAAGAGGACGAAAGGAAGAGAGAGGACCAAAAAGTCACAGGCGGCGGCCAATCGTGAACGAGCGGTGGTCACCGGTTGCCGGCGACTTGTTGAAGAAGAAGAAGAAAAAAAGAAGAAGAAGAAGAATAAAAGAGAGAGAGAAAGAATTAAAAAATAATAATAAAATAATAATATTTTTATATTTTTAATATATTAATATTTTAAAAATTCAAAAATAATTTTTTTAATAAAAAATAGTGCCACATAATCAAACCGTTAAGGGGGTGTTTGAGGCAATGAGGTGGAGTTCTGAAGTCTGGAGTTGTGAAGTCTGGTGAGTTGTGAAGTCTGGAGAGTTATGAAGTATGTATTTGTAGTGCAAAGTTGTTTAGTCTAGAGTTAGGAAGTTTGTGTTTGGGGAGCAGAGTTATGAAGTCTGAAGTATGTTGTCATTTTAGCAATTTTTTTCTTCTGTTTTTTTTAGTTCTTTTAAAATAATTTTTCCAACCACAATTAATAAAGATGTTTGTGGAAAAAAAAATCAATTTTTGTTCTTGAATTTGTCCAAATTGTATTAATTTTCACTACTTTCAATTTAAGCTTAATACATATGATGTCATTTTTATCCAATATTCAATTTGTGCTCGATTCACCGATTAATTTTAATAAAAGATCAAGTAAAAATCTTTATGAACCTATTAGTTTCAACAAAAATAAAGTATTACACAAAATTACAAAATCAACCAATGAATAAATTAATAAAAATTAAACTCTAGTGTTGTTTTTCTATGAAGCTACTTTGAAATAACATATGCTTTACATTTGTTAAATGCATATAAGATACTGTTATTTTTCTCCCTTTTTTCTATGCGTTGTGTTTACTTGATCTTGATGATGGAGTCTATTTTCTAATTTCTAAAATATGTGCACTGCTCAAGGATAGATCATGCCAAGTATTCCTTATTAATTTCAATTTCACTTGAAAATTCCAAACTCTTTGGGCTACTTGATAATGAAGATTTCAAAGCAACTAAAAAGTTTCAAAATTTTGAGATACTCATCTATATCATTCCACATCACCTCCAAAAGTGAAAGATTAGAGTCAGAAAGTTCTCAATACAAACAACTCAAGCCAACCAAACATATTGGAATACAATTTTATTTATCAGAACATAGACTAACTTCATTTCTATCTCATAACGTAGTCATTTTTATAGAATTTCTTTCATGTGCACAAAATCAATTACAAATGTCAATCACAAAAGACCACATCAGAAAAAGGCATGAAAAATGCAATAAAATAAGAAAAAAATTGCATTCCTAAAGTTGAACAGCAGAAAAATCATCATAATACAGTGTCACAACATTTCTTTGTTTTGGAGCATTTTTCTGAGCTATCTACAAGGACAGTTTTCCTCTTTTTGTTCCTTCTTAATGTCTCATATACAATTGCCTTTTCTAATTGCTCAACCCACGAGCATAGCATCCGTGTTTGCACCTCATTCTTTTCAGACAACTCCTCCATCACCTTGATCATTCTCTTCTTCTCCACCATCATTTTCTACACCAAATACTTAACCTACCACATAGTTCATTTAACACAAATAACCCAATGCAAACAATTTACACATGAATGGTTAGAAAGTAACAGAAGAGTAAACAAGTTAAGGGATAAAAAGTAACAATCTAATCGGCCTCAAGTACATGAGATTCAATCATTAAAAAAAGAGGGAAATATGATAGAACACACTAAACAAAACAAAAAAAATCAGTAACAAAAAAAGAGGAAAAAAGGATAGAACCCATGAAACAGAAGCAATAGACGATAACAAAAAAAAGGAAAAATCATAGAACCCACGAAATAGAAGCAAAAAACGATAACAAACAAAAAAGAACCAAGAATCCCTAACAGAAAAAAATAATAACAGGAGGGAAATATGTTATAATTGATTACACAGAACCAAGAAATGGTTAAAAAAAAAAAGAATTACGGATTGCCTACATGTGATGTACTCATTGTCAGCCGGCTAAAAGGGAAAAGAAAACAAACCTGCGATACCCACCCCTCACCAAGCTCCAACGTACCTACCAAGCGAGTCCAACATGCTCTCTATCAAGGGAACAACCATAGACGCAACAAGACGGTTGAAGCGACAAGGAGTGGGTAGATTCTGAAACAACAAAAATAAAGTTAGGGTTTCCAAAACAAATGCGATCCGGAAAAAAACAGAGAGGGAAACGACAAAGGTGAGGGAAAGAGAGATCTGAAAGGAAAAAACAGAAAAGGAAAGAGACATCCGAGAAGGAAACAGTGAATGTGAGGGAAAGAGAGAACATACCTTTGAGATTTAGGACCAACGTCAAGATGGAGAGACGAGAAGAGAGATTTGAGAGAAGGAAGCAACATGAAAATGAAGAGATTCTATTGCATGGCTTCCAAGTGTCTGAGGAGATTGATAGCGAGCATAACTAGCTATTTTTTCCTAATTAATTTAGCTAGTCTTTGATAATTAATTGGCCAAATTTATGCATATTAGTGTTTTATTTGTAGGAAATATATATTGGAGCTAAATTGAGAAATTGGAGTTAATCAGGTGTTCGGGACGTGAAAAAGGCCAAAGAAACAGAGTTGGATCAAGTTGGAAGCTTATTGAATAAGGGCAAATCGAGGACCAGCGTCGAGACCCTAGACCTTGGGCGTCTCGACGCTGCACACTTTACTTTTCTAATTTGGGCGGCAGCAGACACAGCATCGCGACGCTCTGTCAATAGCGTTGTGACGCTCTCATATTTTTCCTTTACAGAATGCTGGATTCACTACAGCGTCGCGACGCTGTGCCTATAG

mRNA sequence

ATGGATGTGAAAACAACATTTCTCAATGGAGATTTAAAAGAGGAGATATATATGATACAACCCGAAGGCTTTGTAATTCCTGGTCAAGAAGACAAGGTATGTCAACTTAAAAAATCTCTTTATGGTCTTAAACAAGCTCCCAAACAATCGTATGAGAAATTTAATAGTACCTTAGTAAACAATGAGTTTATGGTGAATTCTTCCGACACATGTGTTTACTCGAAATTGTTTGGTGTTGATTATGTGATTATTTGCTTGTTTGTTGATGAAATGCTTATTTTCGGTAGCGTGATGTACCTGATGAATTATACTAGACCTGATATTGCATATGTTGTGAGTAGATTGAGTAGCTCAACTAACGGGTATGTGTTCGTTTTTGGAGGAGGAGCTACATCATTGAAATCTGAAAAGCAGACGTGCATTGTGCGATCCACCATGGAGTCAGAGTTTATAACTCTTGAGCTAGCAGAGCAAGAGGCGGAGTGGTTGAGAAGTTTACTTCAAGACGTACCACTGTGGGGGGCGTCTATTCCAGTCTCCTTGCACTGTGATTCACAAGCAGCATATACGCCTGAGACATGGAGTTGTGAAACAATTGTTGAAAAGTGGAATTATCTCCTTGGAGTATACTTGATGAAGCATGACGTGATTGTGAAGGTGTGGCCGCCTTCTATGAAAGAGTGTAATGGATCTCTTTCTAGAGATTTCACAATGACCCAAGCGTCTACGTCCACGTGTCAATCCGGCGTCCACACACTCCAGCAGTTGACCAGTCCGTTCGTTGACCGAGTTTGGTGCCTTTTTTGCGTGCCTTTGACCGAGGAGTTGTTATGCGTGGACTCCTCCATGGCTGACACGTGGCAGCTGGACCCTGTTTTGTGGAAGACGTCTGGAGTTGTGAAGTCTGGTGTTCGGGACGTGAAAAAGGCCAAAGAAACAGAGTTGGATCAAGTTGGAAGCTTATTGAATAAGGGCAAATCGAGGACCAGCGTCGAGACCCTAGACCTTGGGCGTCTCGACGCTGCACACTTTACTTTTCTAATTTGGGCGGCAGCAGACACAGCATCGCGACGCTCTGTCAATAGCGTTGTGACGCTCTCATATTTTTCCTTTACAGAATGCTGGATTCACTACAGCGTCGCGACGCTGTGCCTATAG

Coding sequence (CDS)

ATGGATGTGAAAACAACATTTCTCAATGGAGATTTAAAAGAGGAGATATATATGATACAACCCGAAGGCTTTGTAATTCCTGGTCAAGAAGACAAGGTATGTCAACTTAAAAAATCTCTTTATGGTCTTAAACAAGCTCCCAAACAATCGTATGAGAAATTTAATAGTACCTTAGTAAACAATGAGTTTATGGTGAATTCTTCCGACACATGTGTTTACTCGAAATTGTTTGGTGTTGATTATGTGATTATTTGCTTGTTTGTTGATGAAATGCTTATTTTCGGTAGCGTGATGTACCTGATGAATTATACTAGACCTGATATTGCATATGTTGTGAGTAGATTGAGTAGCTCAACTAACGGGTATGTGTTCGTTTTTGGAGGAGGAGCTACATCATTGAAATCTGAAAAGCAGACGTGCATTGTGCGATCCACCATGGAGTCAGAGTTTATAACTCTTGAGCTAGCAGAGCAAGAGGCGGAGTGGTTGAGAAGTTTACTTCAAGACGTACCACTGTGGGGGGCGTCTATTCCAGTCTCCTTGCACTGTGATTCACAAGCAGCATATACGCCTGAGACATGGAGTTGTGAAACAATTGTTGAAAAGTGGAATTATCTCCTTGGAGTATACTTGATGAAGCATGACGTGATTGTGAAGGTGTGGCCGCCTTCTATGAAAGAGTGTAATGGATCTCTTTCTAGAGATTTCACAATGACCCAAGCGTCTACGTCCACGTGTCAATCCGGCGTCCACACACTCCAGCAGTTGACCAGTCCGTTCGTTGACCGAGTTTGGTGCCTTTTTTGCGTGCCTTTGACCGAGGAGTTGTTATGCGTGGACTCCTCCATGGCTGACACGTGGCAGCTGGACCCTGTTTTGTGGAAGACGTCTGGAGTTGTGAAGTCTGGTGTTCGGGACGTGAAAAAGGCCAAAGAAACAGAGTTGGATCAAGTTGGAAGCTTATTGAATAAGGGCAAATCGAGGACCAGCGTCGAGACCCTAGACCTTGGGCGTCTCGACGCTGCACACTTTACTTTTCTAATTTGGGCGGCAGCAGACACAGCATCGCGACGCTCTGTCAATAGCGTTGTGACGCTCTCATATTTTTCCTTTACAGAATGCTGGATTCACTACAGCGTCGCGACGCTGTGCCTATAG

Protein sequence

MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVNNEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIFGSVMYLMNYTRPDIAYVVSRLSSSTNGYVFVFGGGATSLKSEKQTCIVRSTMESEFITLELAEQEAEWLRSLLQDVPLWGASIPVSLHCDSQAAYTPETWSCETIVEKWNYLLGVYLMKHDVIVKVWPPSMKECNGSLSRDFTMTQASTSTCQSGVHTLQQLTSPFVDRVWCLFCVPLTEELLCVDSSMADTWQLDPVLWKTSGVVKSGVRDVKKAKETELDQVGSLLNKGKSRTSVETLDLGRLDAAHFTFLIWAAADTASRRSVNSVVTLSYFSFTECWIHYSVATLCL
Homology
BLAST of Lag0015310 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 2.9e-58
Identity = 145/332 (43.67%), Postives = 166/332 (50.00%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            MDVKT FLNG+L+EEIYM QPEGF I GQE+KVC+L+KSLYGLKQAPKQ YEKFN+TL+ 
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIF-------------------------- 120
            N F +NSSDTCVYSK+ G D ++ICL+VD+MLIF                          
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 1123

Query: 181  -----GSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                 GSVMYLMNYTRPDIAY VSRLS                                 
Sbjct: 1124 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKK 1183

BLAST of Lag0015310 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-52
Identity = 138/333 (41.44%), Postives = 160/333 (48.05%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
           MDVKT FLNGDL EEIYM+QPEGFV+ G E KVC+L+KSLYGLKQAPK+ YEKF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIF-------------------------- 120
           + ++VN+SD+CVYSK     YV+ICL+VD+MLIF                          
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSE 474

Query: 181 -----GSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                GSVM+LMNYTRPDIAY VSRLS                                 
Sbjct: 475 YAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNK 534

BLAST of Lag0015310 vs. NCBI nr
Match: RVW67328.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-50
Identity = 111/213 (52.11%), Postives = 138/213 (64.79%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
           MDVKTTFLNG+L EEIYM QPEGF+ PGQE KVC+L KSLYGLKQAPKQ +EKF++ +++
Sbjct: 731 MDVKTTFLNGELDEEIYMDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 790

Query: 61  NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIFGS-----------VMYLMNYTRPDIA 120
           N F +N  D C+Y K     YVI+CL+VD+MLI GS           + Y  NY      
Sbjct: 791 NGFKINECDKCIYVKNTQKGYVIVCLYVDDMLIIGSDTNMIIRVLGYLKYTQNYGLHFTR 850

Query: 121 YVV-------------SRLSSSTNGYVFVFGGGATSLKSEKQTCIVRSTMESEFITLELA 180
           Y               S+ S ST+GYVF  GG   S KS KQTCI RSTMESEFI ++ A
Sbjct: 851 YPTVLEGYSYANWISDSKDSKSTSGYVFTLGGATVSWKSSKQTCIARSTMESEFIAIDKA 910

Query: 181 EQEAEWLRSLLQDVPLWGASIP-VSLHCDSQAA 189
            +EA+WLR+ L+D+P W   +P + +HCDSQ A
Sbjct: 911 REEADWLRNFLEDIPNWSKPVPAICIHCDSQLA 943

BLAST of Lag0015310 vs. NCBI nr
Match: GEW19298.1 (peroxidase 72 [Tanacetum cinerariifolium])

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-50
Identity = 111/200 (55.50%), Postives = 139/200 (69.50%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
           MDVKT FLNG+L E+IYM QPEGFV+ GQE KVC+L KS YGLK APKQ +EKF++TL++
Sbjct: 1   MDVKTAFLNGELDEKIYMQQPEGFVVKGQEHKVCKLVKSFYGLKHAPKQWHEKFDNTLLS 60

Query: 61  NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIFGSVMYLMNYTR---------PDIAYV 120
           N F +N  D CVY K +   +VIICL+VD+MLI G+ M ++N T+          DI   
Sbjct: 61  NGFQINECDKCVYVKQYKNAFVIICLYVDDMLIMGTNMDVINQTKKLLHSLFDMKDIGEA 120

Query: 121 VSRLSSSTNGYVFVFGGGATSLKSEKQTCIVRSTMESEFITLELAEQEAEWLRSLLQDVP 180
              L +ST+GYVF  GG A S KS KQT   RSTME+EF++LE A +EAEWLRS L+ +P
Sbjct: 121 DVILGNSTSGYVFTLGGSAVSWKSSKQTMNTRSTMEAEFVSLEKAAEEAEWLRSFLEGIP 180

Query: 181 LWGASIPV-SLHCDSQAAYT 191
           LW   + V  +HCDS AA T
Sbjct: 181 LWPTPVTVMCIHCDSMAALT 200

BLAST of Lag0015310 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 200.7 bits (509), Expect = 2.3e-47
Identity = 135/333 (40.54%), Postives = 155/333 (46.55%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            MDVKT FLNGDL EEIYM+QPEGF+I GQE+KVC+L KSLYGLKQAPKQ +EKF++TL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLI--------------------------- 120
            N F+ N  DTCV+SK+    YVIICL+VD+MLI                           
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1095

Query: 181  ----FGSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                 GSVMYLMN TRPDIAYVVSRLS                                 
Sbjct: 1096 YAKVIGSVMYLMNCTRPDIAYVVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1155

BLAST of Lag0015310 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.7e-22
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            +DVKT FL+GDL+EEIYM QPEGF + G++  VC+L KSLYGLKQAP+Q Y KF+S + +
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NEFMVNSSDTCVYSKLFGV-DYVIICLFVDEMLIFGSVMYLMNYTRPDIA 110
              ++   SD CVY K F   +++I+ L+VD+MLI G    L+   + D++
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLS 1030

BLAST of Lag0015310 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-13
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            +DV   FL G L +E+YM QP GFV   + D VC+L+K++YGLKQAP+  Y +  + L+ 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIFGSVMYLMNYT 105
              F+ + SDT ++    G   + + ++VD++LI G+   L+ +T
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHT 1150


HSP 2 Score: 46.2 bits (108), Expect = 9.6e-04
Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 118  STNGYVFVFGGGATSLKSEKQTCIVRSTMESEFITLELAEQEAEWLRSLLQDVPLWGASI 177
            STNGY+   G    S  S+KQ  +VRS+ E+E+ ++     E +W+ SLL ++ +  +  
Sbjct: 1309 STNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHP 1368

Query: 178  PVSLHCDSQAA 189
            PV ++CD+  A
Sbjct: 1369 PV-IYCDNVGA 1378

BLAST of Lag0015310 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-13
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            MDVKT FLNG LKEEIYM  P+G  I    D VC+L K++YGLKQA +  +E F   L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   NEFMVNSSDTCVYSKLFG--VDYVIICLFVDEMLIFGSVMYLMN 103
             EF+ +S D C+Y    G   + + + L+VD+++I    M  MN
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMN 1102

BLAST of Lag0015310 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-12
Identity = 39/109 (35.78%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            +DV   FL G L +++YM QP GF+   + + VC+L+K+LYGLKQAP+  Y +  + L+ 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIFGSVMYLMNYTRPDIA 110
              F+ + SDT ++    G   V + ++VD++LI G+   L++ T  +++
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLS 1172


HSP 2 Score: 45.4 bits (106), Expect = 1.6e-03
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 118  STNGYVFVFGGGATSLKSEKQTCIVRSTMESEFITLELAEQEAEWLRSLLQDVPLWGASI 177
            STNGY+   G    S  S+KQ  +VRS+ E+E+ ++     E +W+ SLL ++ +     
Sbjct: 1326 STNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRP 1385

Query: 178  PVSLHCDSQAA 189
            PV ++CD+  A
Sbjct: 1386 PV-IYCDNVGA 1395

BLAST of Lag0015310 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-07
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 1  MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
          MDV T FLN  + E IY+ QP GFV     D V +L   +YGLKQAP    E  N+TL  
Sbjct: 1  MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61 NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLI 94
            F  +  +  +Y +      + I ++VD++L+
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLV 93

BLAST of Lag0015310 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 145/332 (43.67%), Postives = 166/332 (50.00%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            MDVKT FLNG+L+EEIYM QPEGF I GQE+KVC+L+KSLYGLKQAPKQ YEKFN+TL+ 
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIF-------------------------- 120
            N F +NSSDTCVYSK+ G D ++ICL+VD+MLIF                          
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 1123

Query: 181  -----GSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                 GSVMYLMNYTRPDIAY VSRLS                                 
Sbjct: 1124 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKK 1183

BLAST of Lag0015310 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-52
Identity = 138/333 (41.44%), Postives = 160/333 (48.05%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
           MDVKT FLNGDL EEIYM+QPEGFV+ G E KVC+L+KSLYGLKQAPK+ YEKF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIF-------------------------- 120
           + ++VN+SD+CVYSK     YV+ICL+VD+MLIF                          
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSE 474

Query: 181 -----GSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                GSVM+LMNYTRPDIAY VSRLS                                 
Sbjct: 475 YAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNK 534

BLAST of Lag0015310 vs. ExPASy TrEMBL
Match: A0A438G546 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3124 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.4e-51
Identity = 111/213 (52.11%), Postives = 138/213 (64.79%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
           MDVKTTFLNG+L EEIYM QPEGF+ PGQE KVC+L KSLYGLKQAPKQ +EKF++ +++
Sbjct: 731 MDVKTTFLNGELDEEIYMDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMIS 790

Query: 61  NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIFGS-----------VMYLMNYTRPDIA 120
           N F +N  D C+Y K     YVI+CL+VD+MLI GS           + Y  NY      
Sbjct: 791 NGFKINECDKCIYVKNTQKGYVIVCLYVDDMLIIGSDTNMIIRVLGYLKYTQNYGLHFTR 850

Query: 121 YVV-------------SRLSSSTNGYVFVFGGGATSLKSEKQTCIVRSTMESEFITLELA 180
           Y               S+ S ST+GYVF  GG   S KS KQTCI RSTMESEFI ++ A
Sbjct: 851 YPTVLEGYSYANWISDSKDSKSTSGYVFTLGGATVSWKSSKQTCIARSTMESEFIAIDKA 910

Query: 181 EQEAEWLRSLLQDVPLWGASIP-VSLHCDSQAA 189
            +EA+WLR+ L+D+P W   +P + +HCDSQ A
Sbjct: 911 REEADWLRNFLEDIPNWSKPVPAICIHCDSQLA 943

BLAST of Lag0015310 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-50
Identity = 137/333 (41.14%), Postives = 156/333 (46.85%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
           MDVKT FLNGDL EEIYM QPEGFV+ GQE+KVC+L+KSLYGLKQAPKQ +EKF+ TLV+
Sbjct: 383 MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 442

Query: 61  NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIF-------------------------- 120
           N F VN SD CVYSK  G   VIICL+VD+MLIF                          
Sbjct: 443 NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 502

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 503 DLILGIRIIRNNEGLTLSQSHYIEKVLKKFNHYDYEPVRTPYDPSIHLKKNSGSPVSQSE 562

Query: 181 -----GSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                GSVM+LMN TRPDIAY VSRLS                                 
Sbjct: 563 YAKIIGSVMFLMNCTRPDIAYAVSRLSRYTHNPAHEHWNAITRLLKYLKGTMNLGLTYTG 622

BLAST of Lag0015310 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-50
Identity = 137/333 (41.14%), Postives = 156/333 (46.85%), Query Frame = 0

Query: 1    MDVKTTFLNGDLKEEIYMIQPEGFVIPGQEDKVCQLKKSLYGLKQAPKQSYEKFNSTLVN 60
            MDVKT FLNGDL EEIYM QPEGFV+ GQE+KVC+L+KSLYGLKQAPKQ +EKF+ TLV+
Sbjct: 893  MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 952

Query: 61   NEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLIF-------------------------- 120
            N F VN SD CVYSK  G   VIICL+VD+MLIF                          
Sbjct: 953  NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 1012

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1013 DLILGIRIIRNNEGLTLSQSHYIEKVLKKFNHYDYEPVRTPYDPSIHLKKNSGSPVSQSE 1072

Query: 181  -----GSVMYLMNYTRPDIAYVVSRLS--------------------------------- 189
                 GSVM+LMN TRPDIAY VSRLS                                 
Sbjct: 1073 YAKIIGSVMFLMNCTRPDIAYAVSRLSRYTHNPAHEHWNAITRLLKYLKGTMNLGLTYTG 1132

BLAST of Lag0015310 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-13
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 0

Query: 1   MDVKTTFLNGDLKEEIYMIQPEGFVIPGQE----DKVCQLKKSLYGLKQAPKQSYEKFNS 60
           +D+   FLNGDL EEIYM  P G+     +    + VC LKKS+YGLKQA +Q + KF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  TLVNNEFMVNSSDTCVYSKLFGVDYVIICLFVDEMLI 94
           TL+   F+ + SD   + K+    ++ + ++VD+++I
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIII 289

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK06518.12.9e-5843.67ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAD6453934.12.4e-5241.44hypothetical protein E3N88_08640 [Mikania micrantha][more]
RVW67328.11.3e-5052.11Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
GEW19298.11.7e-5055.50peroxidase 72 [Tanacetum cinerariifolium][more]
KAG7551885.12.3e-4740.54Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
Match NameE-valueIdentityDescription
P109782.7e-2250.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q9ZT942.3e-1338.46Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041465.1e-1345.19Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW21.5e-1235.78Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P256001.1e-0737.63Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A5D3C5T21.4e-5843.67Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5N6PGV21.2e-5241.44Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran... [more]
A0A438G5466.4e-5152.11Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A2N9EQT11.4e-5041.14Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9H4B01.4e-5041.14Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.18.9e-1339.18cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..103
e-value: 3.2E-28
score: 99.0
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..82
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 1..82
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 118..188
e-value: 5.66549E-21
score: 85.9829

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015310.1Lag0015310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding