Lag0015296 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015296
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr12: 9899261 .. 9899737 (+)
RNA-Seq ExpressionLag0015296
SyntenyLag0015296
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGGGGCATCCTGTTCGGAAACATGTTCTCGACATGATGAACCAATTCAACATCTCGGAGGCTAATGGCGGGGTCGTCTGGGAGAGGAGTCAGGTTTCGTTCATATTTCATTCACTTCCACCAAGCTTCATGCAATTTCGAACGAATGCGAGCATGAATAAGATTCAGTTCAACCTGGCCACCCTTAATGAGTTACAGGTTTATGAGTCCATGCTTAAAAGCAAGAGCAAAAATGTGGTGAAAGGAGAGGTCAATGTGGCCTATTCCAAAAAGAAGTCCCTGAAGGGTTCATCCCCAGGAACAAAACCTATACCTCAAGCTTCTTCATCGAAGCAAATTCAGAAGAAGAATGGTGTAAAGGGGAAGGCTCCTGCTCAAGCTGTACAGGACAAGGGAGAGGCCAAGGTCGTGGCTGATAAGGGCAAGCGTTGTCCTCATTACCTTGCTGAGAAGAAGAGAGAAAAGGAATGA

mRNA sequence

ATGGAAGAGGGGCATCCTGTTCGGAAACATGTTCTCGACATGATGAACCAATTCAACATCTCGGAGGCTAATGGCGGGGTCGTCTGGGAGAGGAGTCAGGTTTCGTTCATATTTCATTCACTTCCACCAAGCTTCATGCAATTTCGAACGAATGCGAGCATGAATAAGATTCAGTTCAACCTGGCCACCCTTAATGAGTTACAGGTTTATGAGTCCATGCTTAAAAGCAAGAGCAAAAATGTGGTGAAAGGAGAGGTCAATGTGGCCTATTCCAAAAAGAAGTCCCTGAAGGGTTCATCCCCAGGAACAAAACCTATACCTCAAGCTTCTTCATCGAAGCAAATTCAGAAGAAGAATGGTGTAAAGGGGAAGGCTCCTGCTCAAGCTGTACAGGACAAGGGAGAGGCCAAGGTCGTGGCTGATAAGGGCAAGCGTTGTCCTCATTACCTTGCTGAGAAGAAGAGAGAAAAGGAATGA

Coding sequence (CDS)

ATGGAAGAGGGGCATCCTGTTCGGAAACATGTTCTCGACATGATGAACCAATTCAACATCTCGGAGGCTAATGGCGGGGTCGTCTGGGAGAGGAGTCAGGTTTCGTTCATATTTCATTCACTTCCACCAAGCTTCATGCAATTTCGAACGAATGCGAGCATGAATAAGATTCAGTTCAACCTGGCCACCCTTAATGAGTTACAGGTTTATGAGTCCATGCTTAAAAGCAAGAGCAAAAATGTGGTGAAAGGAGAGGTCAATGTGGCCTATTCCAAAAAGAAGTCCCTGAAGGGTTCATCCCCAGGAACAAAACCTATACCTCAAGCTTCTTCATCGAAGCAAATTCAGAAGAAGAATGGTGTAAAGGGGAAGGCTCCTGCTCAAGCTGTACAGGACAAGGGAGAGGCCAAGGTCGTGGCTGATAAGGGCAAGCGTTGTCCTCATTACCTTGCTGAGAAGAAGAGAGAAAAGGAATGA

Protein sequence

MEEGHPVRKHVLDMMNQFNISEANGGVVWERSQVSFIFHSLPPSFMQFRTNASMNKIQFNLATLNELQVYESMLKSKSKNVVKGEVNVAYSKKKSLKGSSPGTKPIPQASSSKQIQKKNGVKGKAPAQAVQDKGEAKVVADKGKRCPHYLAEKKREKE
Homology
BLAST of Lag0015296 vs. NCBI nr
Match: XP_038874988.1 (uncharacterized protein LOC120067510 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 7.1e-27
Identity = 81/147 (55.10%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 2   EEGHPVRKHVLDMMNQFNISEANGGVVWERSQVSFIFHSLPPSFMQFRTNASMNKIQFNL 61
           E G+ +R+HVLDMM QFNI+EANG V+ ERSQV+FI  SLP  F+QFR NA M K QFNL
Sbjct: 38  ERGYSIREHVLDMMVQFNIAEANGAVIDERSQVAFILESLPKCFLQFRINAMMKKTQFNL 97

Query: 62  ATLNELQVYESMLKSKSKNVVKGEVNVAYSKKKSLKGSSPGTKPIPQASSSKQIQKKNGV 121
                     S+LK+K K  ++ E +VA+SK+K  KG S GTK + Q+S+SK+IQK  G 
Sbjct: 98  T---------SLLKNKGK--IEREASVAHSKRKFEKGLSSGTKAVSQSSTSKKIQKNKGN 157

Query: 122 KGKAPAQAVQDKGEAKVVADKGKRCPH 149
           KGKAPA A + KG+ K + DKGK C H
Sbjct: 158 KGKAPAAAAKGKGKTK-LPDKGK-CFH 171

BLAST of Lag0015296 vs. NCBI nr
Match: KAA0054309.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-26
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 0

Query: 1   MEEGHPVRKHVLDMMNQFNISEANGGVVWERSQVSFIFHSLPPSFMQFRTNASMNKIQFN 60
           M EG  VR+HV++MM  FN++E NG V+ E SQVSFI  SLP SF+QFR+NA MNKI + 
Sbjct: 122 MNEGASVREHVINMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LAT-LNELQVYESMLKSKSKNVVKGEVNVAYSKKKSLKGSSPGTKPIPQASSSKQIQKKN 120
           L T LNELQ +ES++K K +   KGEVNVA S +K  +GS+ GTK +P +S +K+ +KK 
Sbjct: 182 LTTLLNELQTFESLMKIKGQ---KGEVNVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK 241

Query: 121 GVKGKAPAQAVQDKGEAKVVADKG------------KRCPHYLAEKKREKE 159
           G +G   A     K   K  A KG            + CP YLAEKK+ K+
Sbjct: 242 GGQGN-KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQ 288

BLAST of Lag0015296 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25
Identity = 83/171 (48.54%), Postives = 107/171 (62.57%), Query Frame = 0

Query: 1   MEEGHPVRKHVLDMMNQFNISEANGGVVWERSQVSFIFHSLPPSFMQFRTNASMNKIQFN 60
           M EG  VR+HVL+MM  FN++E NG V+ E SQVSFI  SLP SF+QFR+NA MNKI + 
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LAT-LNELQVYESMLKSKSKNVVKGEVNVAYSKKKSLKGSSPGTKPIPQASSSKQIQKKN 120
           L T LNELQ +ES++K K +   KGE NVA S +K  +GS+ GTK +P +S +K+ +KK 
Sbjct: 182 LTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK 241

Query: 121 GVKGKAPAQAVQDKGEAKVVADKG------------KRCPHYLAEKKREKE 159
           G +G   A     K   K  A KG            + CP YLAEKK+ K+
Sbjct: 242 GGQGN-KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQ 288

BLAST of Lag0015296 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25
Identity = 83/171 (48.54%), Postives = 107/171 (62.57%), Query Frame = 0

Query: 1   MEEGHPVRKHVLDMMNQFNISEANGGVVWERSQVSFIFHSLPPSFMQFRTNASMNKIQFN 60
           M EG  VR+HVL+MM  FN++E NG V+ E SQVSFI  SLP SF+QFR+NA MNKI + 
Sbjct: 121 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 180

Query: 61  LAT-LNELQVYESMLKSKSKNVVKGEVNVAYSKKKSLKGSSPGTKPIPQASSSKQIQKKN 120
           L T LNELQ +ES++K K +   KGE NVA S +K  +GS+ GTK +P +S +K+ +KK 
Sbjct: 181 LTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK 240

Query: 121 GVKGKAPAQAVQDKGEAKVVADKG------------KRCPHYLAEKKREKE 159
           G +G   A     K   K  A KG            + CP YLAEKK+ K+
Sbjct: 241 GGQGN-KANLAAAKTTKKAKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQ 287

BLAST of Lag0015296 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25
Identity = 83/171 (48.54%), Postives = 107/171 (62.57%), Query Frame = 0

Query: 1   MEEGHPVRKHVLDMMNQFNISEANGGVVWERSQVSFIFHSLPPSFMQFRTNASMNKIQFN 60
           M EG  VR+HVL+MM  FN++E NG V+ E SQVSFI  SLP SF+QFR+NA MNKI + 
Sbjct: 122 MNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYT 181

Query: 61  LAT-LNELQVYESMLKSKSKNVVKGEVNVAYSKKKSLKGSSPGTKPIPQASSSKQIQKKN 120
           L T LNELQ +ES++K K +   KGE NVA S +K  +GS+ GTK +P +S +K+ +KK 
Sbjct: 182 LTTLLNELQTFESLMKIKGQ---KGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK 241

Query: 121 GVKGKAPAQAVQDKGEAKVVADKG------------KRCPHYLAEKKREKE 159
           G +G   A     K   K  A KG            + CP YLAEKK+ K+
Sbjct: 242 GGQGN-KANLAAAKTTKKTKAAKGICFHCNQEGHWKRNCPKYLAEKKKAKQ 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038874988.17.1e-2755.10uncharacterized protein LOC120067510 [Benincasa hispida][more]
KAA0054309.16.0e-2648.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0044955.11.0e-2548.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.11.0e-2548.54gag/pol protein [Cucumis melo var. makuwa][more]
TYK14550.11.0e-2548.54gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..158
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 1..95
NoneNo IPR availablePANTHERPTHR35317:SF8POLYPROTEIN-LIKE PROTEINcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015296.1Lag0015296.1mRNA