Lag0015252 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015252
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CYSTM domain-containing protein
Location	chr12: 9152385 .. 9152985 (+)
RNA-Seq Expression	Lag0015252
Synteny	Lag0015252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCAATATCGCCAACAGGAAATTCCCGGTAAGTTAAAGCGAGAGAAGTAATTTCAATTGGTAGTGTAGTTTTGATTCTTGAATGATGTATAGTATAGGTATAATTGGAGTGTAATTTACTGAACACGGCGTCGTTTTGATCTCCGTTGGTTGTTGCATTGCAGTGGGCTATCCGGCGCCGCCTCCGTCGTATCCGGCGGCGGAACCAGTTAAGGAGTGGAAATCGGGGCCTTATGTTGCAGCTCCGCCGCCGGTTGGGTATCCGGTGAGAGACGGTGCAGAGTACCCACATCAAACTTCTGCGCCCCAAACTCAATCCAGAGGAGATGGTTTTTGGAAAGGATGGTCAGTCTCTCTCTCTCCTAATTTCACTTTTCTTTCTATTTTCGTTAAATTATCAACTATTTTACAATAAAATAAAATAAAAACTATTTTTTTTTATAAATGTTTTAAATTAGTAAAAAAAAATAATAATAAAAATAAAAAACACACTATAAACATGAGAATGTATATGAGTAGAAGTAGAGTTTACCAACTTAATTTTTGAACCATTCCTATACTTCTGGTGGGCTGATATTTCAAATGTAGTTTTCAATAA

mRNA sequence

ATGAGCCAATATCGCCAACAGGAAATTCCCGTGGGCTATCCGGCGCCGCCTCCGTCGTATCCGGCGGCGGAACCAGTTAAGGAGTGGAAATCGGGGCCTTATGTTGCAGCTCCGCCGCCGGTTGGGTATCCGGTGAGAGACGGTGCAGAGTACCCACATCAAACTTCTGCGCCCCAAACTCAATCCAGAGGAGATGGTTTTTGGAAAGGATGTTTTCAATAA

Coding sequence (CDS)

ATGAGCCAATATCGCCAACAGGAAATTCCCGTGGGCTATCCGGCGCCGCCTCCGTCGTATCCGGCGGCGGAACCAGTTAAGGAGTGGAAATCGGGGCCTTATGTTGCAGCTCCGCCGCCGGTTGGGTATCCGGTGAGAGACGGTGCAGAGTACCCACATCAAACTTCTGCGCCCCAAACTCAATCCAGAGGAGATGGTTTTTGGAAAGGATGTTTTCAATAA

Protein sequence

MSQYRQQEIPVGYPAPPPSYPAAEPVKEWKSGPYVAAPPPVGYPVRDGAEYPHQTSAPQTQSRGDGFWKGCFQ

Homology

[Close]

BLAST of Lag0015252 vs. NCBI nr
Match: KAG6589304.1 (hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MSQYRQQEIPVGYPAPPPSYPAAEPVKEWKSGPYVAAPPPVGYPVRDGAEYPHQTSAPQT 60
          MSQYR Q+IP+ YPAPPPSYPA E VKE  SGPYVAAPPPVGYPVRDG +YPHQT  PQT
Sbjct: 1  MSQYRHQQIPMAYPAPPPSYPAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQT 60

Query: 61 QSRGDGFWKGC 72
          QS+GDGFWKGC
Sbjct: 61 QSKGDGFWKGC 71

[Close]

BLAST of Lag0015252 vs. NCBI nr
Match: KAG7023002.1 (hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MSQYRQQEIPVGYPAPPPSYPAAEPVKEWKSGPYVAAPPPVGYPVRDGAEYPHQTSAPQT 60
          MSQYR Q+IP+ YPAPPPSYPA E VKE  SGPYVAAPPPVGYPVRDG +YPHQT  PQT
Sbjct: 1  MSQYRHQQIPMAYPAPPPSYPAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQT 60

Query: 61 QSRGDGFWKG 71
          QS+GDGFWKG
Sbjct: 61 QSKGDGFWKG 70

[Close]

BLAST of Lag0015252 vs. NCBI nr
Match: XP_023530417.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MSQYRQQEIPVGYPAPPPSYPAAEPVKEWKSGPYVAAPPPVGYPVRDGAEYPHQTSAPQT 60
          MSQY  Q+IP+ YPAPPPSYPA E VKE  SGPYVAAPPPVGYPVR+G +YPHQT  PQT
Sbjct: 1  MSQYPHQQIPMAYPAPPPSYPAVEEVKESNSGPYVAAPPPVGYPVREGPQYPHQTCTPQT 60

Query: 61 QSRGDGFWKGC 72
          QS+GDGFWKGC
Sbjct: 61 QSKGDGFWKGC 71

[Close]

BLAST of Lag0015252 vs. NCBI nr
Match: XP_008447127.1 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo] >KAA0056521.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa] >TYK12091.1 cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.8e-24
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MSQYRQQEIPVGYPAPPPSYPAAEPVKEWKSGPYVAAPPPVGYPVRDGAEYPHQTSA-PQ 60
          MSQYR QEI +GYPAPPPSY A E  KE KSGPYVAAPPPVGYPVRDG +YPHQT+   Q
Sbjct: 1  MSQYRNQEIDMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNLDAQ 60

Query: 61 TQSRGDGFWKGC 72
          TQSRGDGFWKGC
Sbjct: 61 TQSRGDGFWKGC 72

[Close]

BLAST of Lag0015252 vs. NCBI nr
Match: XP_011659032.1 (cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 7.6e-24
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MSQYRQQEIPVGYPAPPPSYPAAEPVKEWKSGPYVAAPPPVGYPVRDGAEYPHQTS-APQ 60
          MSQYR QEI +GYPAPPPSY A E  KE KSGPYVAAPPPVGYPVRDG +YPHQT+   Q
Sbjct: 1  MSQYRNQEISMGYPAPPPSYAAGEQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQ 60

Query: 61 TQSRGDGFWKGC 72
          TQSRGDGFWKGC
Sbjct: 61 TQSRGDGFWKGC 72

The following BLAST results are available for this feature:

BLAST of Lag0015252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589304.1	2.8e-26	81.69	hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023002.1	4.0e-25	81.43	hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023530417.1	4.0e-25	78.87	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita p...	[more]
XP_008447127.1	5.8e-24	80.56	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
XP_011659032.1	7.6e-24	80.56	cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]	[more]

BLAST of Lag0015252 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..73
None	No IPR available	PANTHER	PTHR31568:SF60	CYSTEINE-RICH/TRANSMEMBRANE DOMAIN A-LIKE PROTEIN	coord: 1..72
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015252.1	Lag0015252.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane