Lag0015238 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015238
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr12: 9003476 .. 9004377 (+)
RNA-Seq ExpressionLag0015238
SyntenyLag0015238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTACAAAATTATCGCTAAGGCCTTAGCTAGGATGAAAAAGACTTTGGAAGGGGTCATTTCTCAAACTCAAGCAACTTTTGTCCCTAGAAGACTTTTATCTAACAACGTGATCCTTGATTTTGAATGTATCCACGCTCTAAACAATAGAAGAAGAGGTAAGGAAGGATCCTTGGCAATGAAGCTGGACATGAGTAAAGCCTACTACAGAGTTGAATGGATCTTCATCAGGGAGATGATGAGGAAACTAGGCTTTAGTTCGTGTTGGACCAACAAAATCATGAAATTCATTGAATCAGTATCCTACAGAGTTCTTTTGAACAGAGTCCCCAGGAAGAAATTCATCCTAGAAGGGGCCTTAAACAAGGAGACCCACTCTCCCCGTACCTCTTTCTCATCTGTGCTGAAGGTTTCTCGGGACTCTTAACCAGGGAAGAATCTAAAACAATTTTAAAGCTTTAAAAATTTGTAAAGGCAACTCTTTTTTGCAGACAACACAGTCTCCTTTTCAGTAGAGCGGAGGAAAAAGATTGTAGAGCTATAAAGAAGATCTTGGAGGTGTACGAGGAAGCTTCTGGGCAATGCATCAACCTTGAAAAGTCCTCTTTCATGACAAGTAAAAACATCTCAAAGGAAAAAGTCGTGAAGCTAGGGGATCTCCTGGGAATTTCCTTAGCAGATAATATGGGCCATTATTTGGGTTTGCCTTCCCAAAATGGGAGGAAAAAGGACGAGGTCTTCAGGAAAGTGAAAGAGAGAGTGTGGAATACCCTTCAGAAGTGGAAAAAGAAGCTCTTCTCAACCGGGGGGGGGGGAGGAAGTGCTTATCAAAGTTATTGCCCAAGCAATCCCGACCTACACGATGAACTGCTTCAGACTCCCAGATTATCTCTGCAATGA

mRNA sequence

ATGATTTACAAAATTATCGCTAAGGCCTTAGCTAGGATGAAAAAGACTTTGGAAGGGGTCATTTCTCAAACTCAAGCAACTTTTGTCCCTAGAAGACTTTTATCTAACAACGTGATCCTTGATTTTGAATGTATCCACGCTCTAAACAATAGAAGAAGAGGTAAGGAAGGATCCTTGGCAATGAAGCTGGACATGAGTAAAGCCTACTACAGAGTTGAATGGATCTTCATCAGGGAGATGATGAGGAAACTAGGCTTTAGTTCGTGTTGGACCAACAAAATCATGAAATTCATTGAATCAGTATCCTACAGAGTTCTTTTGAACAGAGTCCCCAGGAAGAAATTCATCCTAGAAGGGGCCTTAAACAAGGAGACCCACTCTCCCCGTACCTCTTTCTCATCTGTGCTGAAGGCAACTCTTTTTTGCAGACAACACAGTCTCCTTTTCAGTAGAGCGGAGGAAAAAGATTGTAGAGCTATAAAGAAGATCTTGGAGGTGTACGAGGAAGCTTCTGGGCAATGCATCAACCTTGAAAAGTCCTCTTTCATGACAAGTAAAAACATCTCAAAGGAAAAAGTCGTGAAGCTAGGGGATCTCCTGGGAATTTCCTTAGCAGATAATATGGGCCATTATTTGGGTTTGCCTTCCCAAAATGGGAGGAAAAAGGACGAGGTCTTCAGGAAAGTGAAAGAGAGAGTGTGGAATACCCTTCAGAAGTGGAAAAAGAAGCTCTTCTCAACCGGGGGGGGGGGAGGAAGTGCTTATCAAAGTTATTGCCCAAGCAATCCCGACCTACACGATGAACTGCTTCAGACTCCCAGATTATCTCTGCAATGA

Coding sequence (CDS)

ATGATTTACAAAATTATCGCTAAGGCCTTAGCTAGGATGAAAAAGACTTTGGAAGGGGTCATTTCTCAAACTCAAGCAACTTTTGTCCCTAGAAGACTTTTATCTAACAACGTGATCCTTGATTTTGAATGTATCCACGCTCTAAACAATAGAAGAAGAGGTAAGGAAGGATCCTTGGCAATGAAGCTGGACATGAGTAAAGCCTACTACAGAGTTGAATGGATCTTCATCAGGGAGATGATGAGGAAACTAGGCTTTAGTTCGTGTTGGACCAACAAAATCATGAAATTCATTGAATCAGTATCCTACAGAGTTCTTTTGAACAGAGTCCCCAGGAAGAAATTCATCCTAGAAGGGGCCTTAAACAAGGAGACCCACTCTCCCCGTACCTCTTTCTCATCTGTGCTGAAGGCAACTCTTTTTTGCAGACAACACAGTCTCCTTTTCAGTAGAGCGGAGGAAAAAGATTGTAGAGCTATAAAGAAGATCTTGGAGGTGTACGAGGAAGCTTCTGGGCAATGCATCAACCTTGAAAAGTCCTCTTTCATGACAAGTAAAAACATCTCAAAGGAAAAAGTCGTGAAGCTAGGGGATCTCCTGGGAATTTCCTTAGCAGATAATATGGGCCATTATTTGGGTTTGCCTTCCCAAAATGGGAGGAAAAAGGACGAGGTCTTCAGGAAAGTGAAAGAGAGAGTGTGGAATACCCTTCAGAAGTGGAAAAAGAAGCTCTTCTCAACCGGGGGGGGGGGAGGAAGTGCTTATCAAAGTTATTGCCCAAGCAATCCCGACCTACACGATGAACTGCTTCAGACTCCCAGATTATCTCTGCAATGA

Protein sequence

MIYKIIAKALARMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFILEGALNKETHSPRTSFSSVLKATLFCRQHSLLFSRAEEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGGGGGSAYQSYCPSNPDLHDELLQTPRLSLQ
Homology
BLAST of Lag0015238 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-50
Identity = 121/274 (44.16%), Postives = 167/274 (60.95%), Query Frame = 0

Query: 5   IIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKL 64
           +IAKALA R+K  ++ VIS TQ+ FVP R +++N I+ FECI+A+ N+R GK G +AMKL
Sbjct: 336 LIAKALANRLKSVMDSVISPTQSAFVPGRSITDNAIIGFECINAIKNKRYGKLGEVAMKL 395

Query: 65  DMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFI------- 124
           DMSKAY RVEW ++R +M K+GF++ W + IM  +ESV + VL+N VP  +F        
Sbjct: 396 DMSKAYDRVEWQYLRGIMVKMGFANRWVDLIMNCVESVRFAVLINGVPGDEFTPNRGLRQ 455

Query: 125 ---------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKD 184
                          L   +N E      +   + +     + LF     LLF +A   +
Sbjct: 456 GDPLSPYLFIMCAEGLSALINDEEKKGNITRLKINRRCPPISHLFYADDCLLFFKASTGN 515

Query: 185 CRAIKKILEVYEEA-SGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLP 244
           CR+IK ILE YE+A SGQCINL+KS F+ SKN  ++ V  +   L ++  +++G YLGLP
Sbjct: 516 CRSIKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMVNHTESLGQYLGLP 575

Query: 245 SQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
           SQ GR K +VF  +K+RVW  LQ WK KLFS GG
Sbjct: 576 SQTGRNKRQVFNNIKDRVWKALQGWKGKLFSMGG 609

BLAST of Lag0015238 vs. NCBI nr
Match: XP_023925698.1 (uncharacterized protein LOC112037116 [Quercus suber])

HSP 1 Score: 190.3 bits (482), Expect = 2.3e-44
Identity = 117/277 (42.24%), Postives = 165/277 (59.57%), Query Frame = 0

Query: 1   MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
           +IYKIIA+ LA R+K+ L  +IS TQ+ FVP RL+++NV++ +E +H  + RR+GK G+L
Sbjct: 62  VIYKIIAEVLANRLKQILPQIISPTQSAFVPGRLITDNVLVAYEALHMTHGRRKGKTGTL 121

Query: 61  AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKF-ILE 120
           AMKLD+SKAY RVEW F++ +M KLGF S W +++M  + S S+ VL+N  P        
Sbjct: 122 AMKLDISKAYDRVEWDFLKRIMLKLGFPSVWVDRVMSCVISPSFSVLINGKPYGMIHPTR 181

Query: 121 GALNKETHSP------RTSFSSVL-KATL--------FCRQ-----------HSLLFSRA 180
           G    +  SP         F+S+L KA L         CR+            SLLF +A
Sbjct: 182 GIRQGDPLSPYLFLLCAERFTSLLQKAELERKLHGVSICRRAPHISHLLFADDSLLFCQA 241

Query: 181 EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
            EK+ + + +IL++Y EASGQCIN++KSS   + N + +    +  LLG+S  D    YL
Sbjct: 242 IEKETKVVMEILQLYAEASGQCINMDKSSVYFNNNTAPQHRELIKALLGVSEVDRFESYL 301

Query: 241 GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
           GLP+  GRKK   F  +K+RVW  LQ WK + FS  G
Sbjct: 302 GLPTLVGRKKYHTFSFIKDRVWKKLQGWKGRTFSRAG 338

BLAST of Lag0015238 vs. NCBI nr
Match: XP_021714646.1 (uncharacterized protein LOC110682599 [Chenopodium quinoa])

HSP 1 Score: 189.5 bits (480), Expect = 3.9e-44
Identity = 103/274 (37.59%), Postives = 153/274 (55.84%), Query Frame = 0

Query: 1   MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
           ++YK+ +K++A R+K  L+ ++++ Q+ FVP+RL+++N ++  E  H +  R +G+ GS+
Sbjct: 251 VLYKLASKSVANRLKPLLQRMVTENQSAFVPKRLITDNALIALELFHTMKKRSKGRRGSI 310

Query: 61  AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFILEG 120
           +MKLDMSKAY RVEW F+R ++ KLGF+  W + IM F+ +VSY  ++N +P    I   
Sbjct: 311 SMKLDMSKAYDRVEWEFLRRLLTKLGFAGAWVDTIMTFVSTVSYSFIINGIPSNDLIPSR 370

Query: 121 AL---------------------------NKETHSPRTSFSSVLKATLFCRQHSLLFSRA 180
            L                            K  HS R S +      LF    SLLF+RA
Sbjct: 371 GLRQGDPISPYLFILVSDVLSRMLQLASEKKLIHSVRASRNGPDITHLFFADDSLLFTRA 430

Query: 181 EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
             ++C  I  +L  YE  SGQ INLEKS    SK +S    +    +LG  + +N   YL
Sbjct: 431 TRQECSVIVDLLNKYEATSGQKINLEKSEVSFSKGVSMPARITFSSVLGTEMVENHVKYL 490

Query: 241 GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFS 247
           GLP++ GR K  VF  VK+R+W  +Q WK+KL S
Sbjct: 491 GLPTEIGRSKKAVFAYVKDRIWKKVQGWKEKLLS 524

BLAST of Lag0015238 vs. NCBI nr
Match: XP_021749725.1 (uncharacterized protein LOC110715453 [Chenopodium quinoa])

HSP 1 Score: 186.8 bits (473), Expect = 2.5e-43
Identity = 105/277 (37.91%), Postives = 151/277 (54.51%), Query Frame = 0

Query: 1   MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
           ++YK+ +K++A R+K  L G++++ Q+ FVP+RL++NN ++  E  H +  R +G+ GS+
Sbjct: 435 VLYKLASKSVANRLKPLLHGMVTENQSAFVPKRLITNNALIALELFHTMKKRSKGRRGSI 494

Query: 61  AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFILEG 120
           A KLDMSKAY RVEW F+R ++ KLGF+  W + IM F+ +VSY   +N VP    I   
Sbjct: 495 AKKLDMSKAYDRVEWEFLRRLLTKLGFAGAWVDTIMTFVSTVSYSFNINGVPLNDLIPSR 554

Query: 121 AL---------------------------NKETHSPRTSFSSVLKATLFCRQHSLLFSRA 180
            L                            K  H  R S +      LF     LLF+RA
Sbjct: 555 GLRQGDPISPYLFILVSDVLSRMLQLASERKLIHGVRASRNGPEITHLFFADDILLFTRA 614

Query: 181 EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
             ++C  I  IL  YE  SGQ INLEKS    SK +     + L  +LG+ + ++   YL
Sbjct: 615 TRQECSVIVDILNKYEATSGQKINLEKSEVSFSKGVPLPSRITLSSVLGMKMVESHVKYL 674

Query: 241 GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
           GLP++ GR K  VF  VK+R+W  +Q WK+KL S  G
Sbjct: 675 GLPTKIGRSKKAVFAFVKDRIWKKVQGWKEKLLSRPG 711

BLAST of Lag0015238 vs. NCBI nr
Match: PKA56961.1 (Putative ribonuclease H protein [Apostasia shenzhenica])

HSP 1 Score: 186.0 bits (471), Expect = 4.3e-43
Identity = 108/275 (39.27%), Postives = 155/275 (56.36%), Query Frame = 0

Query: 3   YKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAM 62
           YKIIAKALA R+K  L  +IS  Q+ FVP+RL+S+N+I+ +EC+H++N R+RG     A+
Sbjct: 496 YKIIAKALANRLKPVLSSIISDNQSAFVPKRLISDNIIVAYECLHSMNKRKRGANDFCAL 555

Query: 63  KLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNR------VPRK-- 122
           KLDMSKAY RVEW F+ +MM  + F S +   I+  I +VSY +  N       +P++  
Sbjct: 556 KLDMSKAYDRVEWPFLEQMMVAMDFPSKYIQNILNCITTVSYNISFNGSLFGNIIPQRGL 615

Query: 123 -------------------KFILEGALNKETHSPRTSFSSVLKATLFCRQHSLLFSRAEE 182
                                I     N++ H  R S  S     LF    SLLF RA  
Sbjct: 616 RQGDPLSPYFFLICAEGLSSLIYREERNRQVHGVRASRRSPDITHLFFADDSLLFFRARV 675

Query: 183 KDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGL 242
           ++ + I+KI+E+YE+ASGQ IN +KS    S+N   EK ++L  LL +    N+  YLGL
Sbjct: 676 EEAQNIQKIIELYEKASGQQINYDKSGLFFSRNTPCEKRIRLKQLLNVKEESNIDKYLGL 735

Query: 243 PSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
           P   GR K + F  +K+R+   ++ WK++L S GG
Sbjct: 736 PPMIGRAKKKAFLSIKDRISKRIEGWKERLLSIGG 770

BLAST of Lag0015238 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 121/274 (44.16%), Postives = 167/274 (60.95%), Query Frame = 0

Query: 5   IIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKL 64
           +IAKALA R+K  ++ VIS TQ+ FVP R +++N I+ FECI+A+ N+R GK G +AMKL
Sbjct: 336 LIAKALANRLKSVMDSVISPTQSAFVPGRSITDNAIIGFECINAIKNKRYGKLGEVAMKL 395

Query: 65  DMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFI------- 124
           DMSKAY RVEW ++R +M K+GF++ W + IM  +ESV + VL+N VP  +F        
Sbjct: 396 DMSKAYDRVEWQYLRGIMVKMGFANRWVDLIMNCVESVRFAVLINGVPGDEFTPNRGLRQ 455

Query: 125 ---------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRAEEKD 184
                          L   +N E      +   + +     + LF     LLF +A   +
Sbjct: 456 GDPLSPYLFIMCAEGLSALINDEEKKGNITRLKINRRCPPISHLFYADDCLLFFKASTGN 515

Query: 185 CRAIKKILEVYEEA-SGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYLGLP 244
           CR+IK ILE YE+A SGQCINL+KS F+ SKN  ++ V  +   L ++  +++G YLGLP
Sbjct: 516 CRSIKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMVNHTESLGQYLGLP 575

Query: 245 SQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
           SQ GR K +VF  +K+RVW  LQ WK KLFS GG
Sbjct: 576 SQTGRNKRQVFNNIKDRVWKALQGWKGKLFSMGG 609

BLAST of Lag0015238 vs. ExPASy TrEMBL
Match: A0A2N9ESR2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5496 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-45
Identity = 111/277 (40.07%), Postives = 163/277 (58.84%), Query Frame = 0

Query: 1    MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
            +IYK+I+K LA R+KK L  VIS TQ+ FVP RL+++N+++ FE +H ++N+R GK GS+
Sbjct: 844  VIYKLISKVLANRLKKVLPKVISDTQSAFVPGRLITDNILIAFETLHHMHNQRSGKVGSM 903

Query: 61   AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFI--- 120
            A+KLDMSKAY RVEW F++++M ++GF   WT+ IM  I +VSY +L+N  P        
Sbjct: 904  ALKLDMSKAYDRVEWGFLKQVMTRMGFHETWTSMIMACISTVSYSLLINGEPTGLITPTR 963

Query: 121  -------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRA 180
                               L G L K  +       S+ +       LF    SLLF RA
Sbjct: 964  GLRQGDPISPYLFLLCAEGLNGLLKKAANQGDIHGVSLCRRGPKITNLFFADDSLLFCRA 1023

Query: 181  EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
              ++C+ I+ IL +YE+ASGQ +N EK++   S+N  +    +L D+LG+        YL
Sbjct: 1024 TREECQKIQHILWLYEKASGQKLNREKTTLFFSRNTPQAMQEELKDILGVPSIQQYEKYL 1083

Query: 241  GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
            GLPS  G++K   F ++KERVW+ ++ WK+KL S  G
Sbjct: 1084 GLPSLVGKEKITCFSQIKERVWSKIKGWKEKLLSQAG 1120

BLAST of Lag0015238 vs. ExPASy TrEMBL
Match: A0A2N9I9F4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50479 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-45
Identity = 111/277 (40.07%), Postives = 163/277 (58.84%), Query Frame = 0

Query: 1    MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
            +IYK+I+K LA R+KK L  VIS TQ+ FVP RL+++N+++ FE +H ++N+R GK GS+
Sbjct: 1413 VIYKLISKVLANRLKKVLPKVISDTQSAFVPGRLITDNILIAFETLHHMHNQRSGKVGSM 1472

Query: 61   AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFI--- 120
            A+KLDMSKAY RVEW F++++M ++GF   WT+ IM  I +VSY +L+N  P        
Sbjct: 1473 ALKLDMSKAYDRVEWGFLKQVMTRMGFHETWTSMIMACISTVSYSLLINGEPTGLITPTR 1532

Query: 121  -------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRA 180
                               L G L K  +       S+ +       LF    SLLF RA
Sbjct: 1533 GLRQGDPISPYLFLLCAEGLNGLLKKAANQGDIHGVSLCRRGPKITNLFFADDSLLFCRA 1592

Query: 181  EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
              ++C+ I+ IL +YE+ASGQ +N EK++   S+N  +    +L D+LG+        YL
Sbjct: 1593 TREECQKIQHILWLYEKASGQKLNREKTTLFFSRNTPQAMQEELKDILGVPSIQQYEKYL 1652

Query: 241  GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
            GLPS  G++K   F ++KERVW+ ++ WK+KL S  G
Sbjct: 1653 GLPSLVGKEKITCFSQIKERVWSKIKGWKEKLLSQAG 1689

BLAST of Lag0015238 vs. ExPASy TrEMBL
Match: A0A2N9IP69 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54170 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-45
Identity = 110/277 (39.71%), Postives = 161/277 (58.12%), Query Frame = 0

Query: 1   MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
           +IY++I+K LA R KK L  +IS+TQ+ FVP RL+++N+++ FE +H +NN+R GK GS+
Sbjct: 362 VIYELISKVLANRFKKVLPYIISETQSAFVPGRLITDNILIAFETLHYMNNQRSGKVGSM 421

Query: 61  AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFI--- 120
           A+KLDMSKAY RVEW F++++M K+GF S W + IM+ I +VSY +L+N  P    I   
Sbjct: 422 ALKLDMSKAYDRVEWAFLKQVMLKMGFHSHWVSLIMECISTVSYSLLINGEPTGNIIPSR 481

Query: 121 -------------------LEGALNKETHSPRTSFSSVLK-----ATLFCRQHSLLFSRA 180
                              L G LNK          S+ +       LF    SLLF RA
Sbjct: 482 GLRQGDPISPYLFLLCAEGLNGLLNKAASKGDIHGVSICRRGPKLTHLFFADDSLLFCRA 541

Query: 181 EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
            + +C  I+++L+VYE  SGQ +N  K++   S+N  +     + D+LG+        YL
Sbjct: 542 TQAECGKIQEVLQVYERVSGQQLNKAKTTLFFSRNTPQATQDDIKDILGVPSIQQYEKYL 601

Query: 241 GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
            LPS  G+KK   F ++KERVW+ ++ WK+KL S  G
Sbjct: 602 RLPSLVGKKKISCFAQIKERVWSKVKGWKEKLLSQAG 638

BLAST of Lag0015238 vs. ExPASy TrEMBL
Match: A0A2N9H0J9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33051 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-44
Identity = 109/277 (39.35%), Postives = 163/277 (58.84%), Query Frame = 0

Query: 1    MIYKIIAKALA-RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSL 60
            +IYK+I+K LA R+K+ L  VI++TQ+ FVP RL+++NV++ FE +H ++N+R+G+ GS+
Sbjct: 917  VIYKLISKVLANRLKEVLPTVIAETQSAFVPGRLITDNVLIAFETLHHMHNQRQGRVGSM 976

Query: 61   AMKLDMSKAYYRVEWIFIREMMRKLGFSSCWTNKIMKFIESVSYRVLLNRVPRKKFI--- 120
            A+KLDMSKAY RVEW F+R++M K+GF S W + +M+ I +VSY +L+N  PR       
Sbjct: 977  ALKLDMSKAYDRVEWSFLRQVMLKMGFHSQWVSLMMECITTVSYSLLINGEPRGHITPSR 1036

Query: 121  -------------------LEGALNK-----ETHSPRTSFSSVLKATLFCRQHSLLFSRA 180
                               L G LNK     E H             LF    SLLF RA
Sbjct: 1037 GLRQGDPISPYLFLLCAEGLNGLLNKAAAQGEIHGVSLCRRGPKLTHLFFADDSLLFCRA 1096

Query: 181  EEKDCRAIKKILEVYEEASGQCINLEKSSFMTSKNISKEKVVKLGDLLGISLADNMGHYL 240
             + +C  I+ +L +YE+ASGQ +N  K++   S N S+     + ++LG+        YL
Sbjct: 1097 TQAECHKIQDLLNIYEKASGQQLNRSKTTLFFSHNTSQATQDDIKNILGVPSIRQYEKYL 1156

Query: 241  GLPSQNGRKKDEVFRKVKERVWNTLQKWKKKLFSTGG 250
            GLPS  G++K   F ++K+RVW+ ++ WK+KL S  G
Sbjct: 1157 GLPSLVGKEKMACFSQIKDRVWSKVKGWKEKLLSQAG 1193

BLAST of Lag0015238 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-10
Identity = 26/85 (30.59%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 12 RMKKTLEGVISQTQATFVPRRLLSNNVILDFECIHALNNRRRGKEGSLAMKLDMSKAYYR 71
          R+K  +  +I   QA+F+P R+ ++N++   E +H++  R++G +G + +KLD+ KAY R
Sbjct: 4  RLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSM-RRKKGVKGWMLLKLDLEKAYDR 63

Query: 72 VEWIFIREMMRKLGFSSCWTNKIMK 97
          + W ++ + +   GF   W  +I +
Sbjct: 64 IRWDYLEDTLISAGFPEVWLPEIAR 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157437.12.1e-5044.16uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_023925698.12.3e-4442.24uncharacterized protein LOC112037116 [Quercus suber][more]
XP_021714646.13.9e-4437.59uncharacterized protein LOC110682599 [Chenopodium quinoa][more]
XP_021749725.12.5e-4337.91uncharacterized protein LOC110715453 [Chenopodium quinoa][more]
PKA56961.14.3e-4339.27Putative ribonuclease H protein [Apostasia shenzhenica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUG81.0e-5044.16uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2N9ESR22.2e-4540.07Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5496 PE=3 SV=1[more]
A0A2N9I9F42.2e-4540.07Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9IP692.9e-4539.71Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9H0J91.9e-4439.35Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33051 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G20520.13.9e-1030.59RNA binding;RNA-directed DNA polymerases [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..110
e-value: 3.7E-9
score: 36.4
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 2..251
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..251

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015238.1Lag0015238.1mRNA