Lag0015182 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015182
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Small ubiquitin-related modifier
Location	chr12: 8418988 .. 8419503 (-)
RNA-Seq Expression	Lag0015182
Synteny	Lag0015182

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAGAACCAGAACCAGACCCAGGATGAAACGACCCGACAACCCGAATCCCCACCCGCATCGAGCTACGTCAACATCAAGGTCAATGGACAGGTTCTGTTTCAAATTTTCACCGAATCCTCAAAACCCTCGTAGTCGTAAGCAAGAAAACTGGACAGATTTTGCTTGTTTTTTTGTGTTTCGTAGGATGGGAGCGAAGTTTATTTTAGGGTTTTAAAGAGAACCCAGCTCAGGAAACTCATGAAAGTCTACTGTGAGCGACAAGCCTTGGAACAGAGGACCATTGCGTTTCTCTTGGACGGCCATCCCATCACCGGAAACCAGACTGCCGATGAGGTTGTTTTTTTCGATTCTTCCCCTTTTTTTTTTGTGGGGTTTTGGTATATATTTGTTTGATGATGTTTTGTGTTTGATTTTCAGCTGGGGATGGAGGATGGGGATGAAATTGATGCGATGAAACACCACGGCGGCGGCGGCGGCGGAGCTGAGGGGGGTTTCTGTGAAAAATGGTGA

mRNA sequence

ATGAACCAGAACCAGAACCAGACCCAGGATGAAACGACCCGACAACCCGAATCCCCACCCGCATCGAGCTACGTCAACATCAAGGTCAATGGACAGGATGGGAGCGAAGTTTATTTTAGGGTTTTAAAGAGAACCCAGCTCAGGAAACTCATGAAAGTCTACTGTGAGCGACAAGCCTTGGAACAGAGGACCATTGCGTTTCTCTTGGACGGCCATCCCATCACCGGAAACCAGACTGCCGATGAGCTGGGGATGGAGGATGGGGATGAAATTGATGCGATGAAACACCACGGCGGCGGCGGCGGCGGAGCTGAGGGGGGTTTCTGTGAAAAATGGTGA

Coding sequence (CDS)

ATGAACCAGAACCAGAACCAGACCCAGGATGAAACGACCCGACAACCCGAATCCCCACCCGCATCGAGCTACGTCAACATCAAGGTCAATGGACAGGATGGGAGCGAAGTTTATTTTAGGGTTTTAAAGAGAACCCAGCTCAGGAAACTCATGAAAGTCTACTGTGAGCGACAAGCCTTGGAACAGAGGACCATTGCGTTTCTCTTGGACGGCCATCCCATCACCGGAAACCAGACTGCCGATGAGCTGGGGATGGAGGATGGGGATGAAATTGATGCGATGAAACACCACGGCGGCGGCGGCGGCGGAGCTGAGGGGGGTTTCTGTGAAAAATGGTGA

Protein sequence

MNQNQNQTQDETTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTIAFLLDGHPITGNQTADELGMEDGDEIDAMKHHGGGGGGAEGGFCEKW

Homology

[Close]

BLAST of Lag0015182 vs. NCBI nr
Match: XP_022969393.1 (small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-35
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MNQNQNQTQDETTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQAL 60
           M+   ++ Q+  TR+PE+ P ++YVN+KVNGQDGSEVYFR+ KRTQL KLMK YC+RQAL
Sbjct: 1   MSTTMDENQEAPTRKPEAQPGTNYVNVKVNGQDGSEVYFRICKRTQLSKLMKGYCKRQAL 60

Query: 61  EQRTIAFLLDGHPITGNQTADELGMEDGDEIDAMKHHGGGGGG 104
           E RTIAFLLDGH I GNQTADELGMEDGDEIDAMKHHGGGGGG
Sbjct: 61  ELRTIAFLLDGHAIAGNQTADELGMEDGDEIDAMKHHGGGGGG 103

[Close]

BLAST of Lag0015182 vs. NCBI nr
Match: XP_023553983.1 (small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 4.3e-34
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MNQNQNQTQDETTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQAL 60
           M+   ++ ++  TR+PE+ P S YVN+KVNGQDGSEVYFR+ KRTQL +LMK YC+RQAL
Sbjct: 1   MSTTMDENREAPTRKPEAEPGSKYVNVKVNGQDGSEVYFRICKRTQLSELMKAYCKRQAL 60

Query: 61  EQRTIAFLLDGHPITGNQTADELGMEDGDEIDAMKHHGGGGGG 104
           E  TIAFLLDGH I GNQTADELGMEDGDEIDAMKHHGGGGGG
Sbjct: 61  ELGTIAFLLDGHAIVGNQTADELGMEDGDEIDAMKHHGGGGGG 103

[Close]

BLAST of Lag0015182 vs. NCBI nr
Match: XP_038888534.1 (small ubiquitin-related modifier 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 76/101 (75.25%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 4   NQNQTQDETTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQR 63
           N+N + +ET R+PES P S YVN+KVNGQDGSEVYFR+ KRTQL+KLMK YC+RQ LE R
Sbjct: 5   NKNDSDEETVRKPESKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELR 64

Query: 64  TIAFLLDGHPITGNQTADELGMEDGDEIDAMKHHGGGGGGA 105
           TIAFLLDGH I G QTA+EL MEDGDEIDAMKHHGGG  GA
Sbjct: 65  TIAFLLDGHSIAGTQTAEELEMEDGDEIDAMKHHGGGSDGA 105

[Close]

BLAST of Lag0015182 vs. NCBI nr
Match: XP_022952738.1 (small ubiquitin-related modifier 1-like [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 4.7e-33
Identity = 76/104 (73.08%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MNQNQNQTQDETTRQPESPPAS-SYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQA 60
           M+   ++ Q+   R+PE+ P + +YVN+KVNGQDGSEVYFR+ KRTQL KLMK YC+RQA
Sbjct: 1   MSTTMDENQEAPIRKPEAEPGNPNYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQA 60

Query: 61  LEQRTIAFLLDGHPITGNQTADELGMEDGDEIDAMKHHGGGGGG 104
           LE RTIAFLLDGH I GNQTADELGMEDGD+IDAMKHHGGGGGG
Sbjct: 61  LELRTIAFLLDGHAIAGNQTADELGMEDGDKIDAMKHHGGGGGG 104

[Close]

BLAST of Lag0015182 vs. NCBI nr
Match: KAA0061648.1 (small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK05858.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-30
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 6   NQTQDETTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTI 65
           N + +ETTR+ E  P S YVN+KVNGQDGSEVYFR+ K+++L KLM  YC+RQ LE  TI
Sbjct: 7   NGSDEETTRKNEPKPESEYVNLKVNGQDGSEVYFRISKKSELSKLMYSYCKRQELEFSTI 66

Query: 66  AFLLDGHPITGNQTADELGMEDGDEIDAMKHHGGGGGGA 105
           AFL+DGHPI G QTA+ELG+EDGDEIDAMKHH GGGGGA
Sbjct: 67  AFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGA 105

[Close]

BLAST of Lag0015182 vs. ExPASy Swiss-Prot
Match: Q9FLP6 (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 12  TTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTIAFLLDG 71
           T  + + P   +++N+KV GQDG+EV+FR+ + TQL+KLM  YC+RQ+++  +IAFL DG
Sbjct: 4   TPEEDKKPDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDG 63

Query: 72  HPITGNQTADELGMEDGDEIDAMKHHGGGG 102
             +   QT DEL MEDGDEIDAM H  GGG
Sbjct: 64  RRLRAEQTPDELEMEDGDEIDAMLHQTGGG 93

[Close]

BLAST of Lag0015182 vs. ExPASy Swiss-Prot
Match: P55852 (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 23  SYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTIAFLLDGHPITGNQTADE 82
           +++N+KV GQDG+EV+FR+ + TQL+KLM  YC+RQ+++  +IAFL DG  +   QT DE
Sbjct: 16  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDE 75

Query: 83  LGMEDGDEIDAMKHHGGGGGG 104
           L MEDGDEIDAM H  GG GG
Sbjct: 76  LDMEDGDEIDAMLHQTGGSGG 96

[Close]

BLAST of Lag0015182 vs. ExPASy Swiss-Prot
Match: P55857 (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-21
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 23  SYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTIAFLLDGHPITGNQTADE 82
           +++N+KV GQDG+EV+FR+ + TQL+KLM  YC+RQ+++   IAFL DG  + G QT DE
Sbjct: 19  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDE 78

Query: 83  LGMEDGDEIDAMKHHGGG 101
           L MEDGDEIDAM H  GG
Sbjct: 79  LEMEDGDEIDAMLHQTGG 96

[Close]

BLAST of Lag0015182 vs. ExPASy Swiss-Prot
Match: O13351 (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmt3 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-16
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 13  TRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTIAFLLDGH 72
           T Q +  P++ ++N+KV GQD +EV+F++ K T+  KLMK+YC RQ     ++ FL+DG 
Sbjct: 24  TSQQDVKPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGE 83

Query: 73  PITGNQTADELGMEDGDEIDAMKHHGGG 101
            I  +QT  EL MEDGD+I+A+    GG
Sbjct: 84  RIRPDQTPAELDMEDGDQIEAVLEQLGG 111

[Close]

BLAST of Lag0015182 vs. ExPASy Swiss-Prot
Match: P61955 (Small ubiquitin-related modifier 2 OS=Bos taurus OX=9913 GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 10  DETTRQPESPPASSYVNIKVNGQDGSEVYFRVLKRTQLRKLMKVYCERQALEQRTIAFLL 69
           DE  ++      + ++N+KV GQDGS V F++ + T L KLMK YCERQ L  R I F  
Sbjct: 3   DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62

Query: 70  DGHPITGNQTADELGMEDGDEIDAMKHHGGG 101
           DG PI    T  +L MED D ID  +   GG
Sbjct: 63  DGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

The following BLAST results are available for this feature:

BLAST of Lag0015182 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022969393.1	3.0e-35	75.73	small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima]	[more]
XP_023553983.1	4.3e-34	73.79	small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038888534.1	1.2e-33	75.25	small ubiquitin-related modifier 1-like isoform X1 [Benincasa hispida]	[more]
XP_022952738.1	4.7e-33	73.08	small ubiquitin-related modifier 1-like [Cucurbita moschata]	[more]
KAA0061648.1	3.7e-30	70.71	small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK05858.1 small ...	[more]

BLAST of Lag0015182 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLP6	1.5e-21	53.33	Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1...	[more]
P55852	2.5e-21	58.02	Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1...	[more]
P55857	4.3e-21	58.97	Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
O13351	9.3e-16	45.45	Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
P61955	3.9e-14	45.05	Small ubiquitin-related modifier 2 OS=Bos taurus OX=9913 GN=SUMO2 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 26..94 e-value: 3.4E-18 score: 65.2
None	No IPR available	GENE3D	3.10.20.90		coord: 1..100 e-value: 3.6E-30 score: 106.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR10562:SF85	SMALL UBIQUITIN-RELATED MODIFIER	coord: 20..102
None	No IPR available	PANTHER	PTHR10562	SMALL UBIQUITIN-RELATED MODIFIER	coord: 20..102
None	No IPR available	CDD	cd16116	Ubl_Smt3_like	coord: 24..96 e-value: 2.96372E-35 score: 113.863
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 23..100 score: 10.680043
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 10..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015182.1	Lag0015182.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding