Lag0015122 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015122
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
Location	chr12: 7894569 .. 7895120 (+)
RNA-Seq Expression	Lag0015122
Synteny	Lag0015122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTGTTTTCTCCTATCCCTAGATATGGCTGCCTCTTCTGCATCTGCATGTCTTGTGGGAATGGTATTTTCACTCACTGTTCTAAATCAAATCTACGCAAGTTCTTATATAGCAGGCGATTAGTCCCTTCTACGAGCCTCCAATCATTGGGTAAAAGGGGTAAAGCCTGTGTGGTAATGGCCTCTCTGGAACCAAGGCAGAATGAAGGAAGAAGAGACTTCCTAAAGTTTTTGCTTGGAAATGTTGGAGTTGGTACATCTGCTTTATTGGGAAGTGGGAGAGCCAATGCTGATGACCAAGGGGTATCTTCATCTAGGATGTCTTATTCTAGGTTTCTGGAGTATCTGGACAAGGATAGAGTGAAGAAAGTAGATCTATTTGAAAATGGAACTATAGCAATTGTTGAGGCTGTCTCCCCTGAATTGGGCAACCGAGTGCAGCGTGTTCGTGTGCAGCAGATCACTGGTTTGGCCAAACAGGCAAGTTTGACACATTCACCATGTCAACAATGCATTATTTTTCAGTCATTTTCTTCAAATCATTTTTGA

mRNA sequence

ATGATGCTGTTTTCTCCTATCCCTAGATATGGCTGCCTCTTCTGCATCTGCATGTCTTGTGGGAATGGTATTTTCACTCACTGTTCTAAATCAAATCTACGCAAGTTCTTATATAGCAGGCGATTAGTCCCTTCTACGAGCCTCCAATCATTGGGTAAAAGGGGTAAAGCCTGTGTGGTAATGGCCTCTCTGGAACCAAGGCAGAATGAAGGAAGAAGAGACTTCCTAAAGTTTTTGCTTGGAAATGTTGGAGTTGGTACATCTGCTTTATTGGGAAGTGGGAGAGCCAATGCTGATGACCAAGGGGTATCTTCATCTAGGATGTCTTATTCTAGGTTTCTGGAGTATCTGGACAAGGATAGAGTGAAGAAAGTAGATCTATTTGAAAATGGAACTATAGCAATTGTTGAGGCTGTCTCCCCTGAATTGGGCAACCGAGTGCAGCGTGTTCGTGTGCAGCAGATCACTGGTTTGGCCAAACAGGCAAGTTTGACACATTCACCATGTCAACAATGCATTATTTTTCAGTCATTTTCTTCAAATCATTTTTGA

Coding sequence (CDS)

ATGATGCTGTTTTCTCCTATCCCTAGATATGGCTGCCTCTTCTGCATCTGCATGTCTTGTGGGAATGGTATTTTCACTCACTGTTCTAAATCAAATCTACGCAAGTTCTTATATAGCAGGCGATTAGTCCCTTCTACGAGCCTCCAATCATTGGGTAAAAGGGGTAAAGCCTGTGTGGTAATGGCCTCTCTGGAACCAAGGCAGAATGAAGGAAGAAGAGACTTCCTAAAGTTTTTGCTTGGAAATGTTGGAGTTGGTACATCTGCTTTATTGGGAAGTGGGAGAGCCAATGCTGATGACCAAGGGGTATCTTCATCTAGGATGTCTTATTCTAGGTTTCTGGAGTATCTGGACAAGGATAGAGTGAAGAAAGTAGATCTATTTGAAAATGGAACTATAGCAATTGTTGAGGCTGTCTCCCCTGAATTGGGCAACCGAGTGCAGCGTGTTCGTGTGCAGCAGATCACTGGTTTGGCCAAACAGGCAAGTTTGACACATTCACCATGTCAACAATGCATTATTTTTCAGTCATTTTCTTCAAATCATTTTTGA

Protein sequence

MMLFSPIPRYGCLFCICMSCGNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLLGNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQQITGLAKQASLTHSPCQQCIIFQSFSSNHF

Homology

[Close]

BLAST of Lag0015122 vs. NCBI nr
Match: XP_038887816.1 (ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Benincasa hispida] >XP_038887817.1 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 242.3 bits (617), Expect = 3.3e-60
Identity = 126/141 (89.36%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 21  GNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLL 80
           GNG+ THCSKSNLRKFL+SRRLVPSTSLQSLGKR KA VV ASLEPR+NEGRRDFLK LL
Sbjct: 12  GNGMSTHCSKSNLRKFLHSRRLVPSTSLQSLGKRAKAGVVKASLEPRENEGRRDFLKLLL 71

Query: 81  GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 140
           GNVGVGTSALLGSGRANAD+QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS
Sbjct: 72  GNVGVGTSALLGSGRANADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 131

Query: 141 PELGNRVQRVRVQQITGLAKQ 162
           PELGNRVQRVRV Q+ GL+++
Sbjct: 132 PELGNRVQRVRV-QLPGLSQE 151

[Close]

BLAST of Lag0015122 vs. NCBI nr
Match: XP_022147949.1 (ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Momordica charantia] >XP_022147950.1 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Momordica charantia])

HSP 1 Score: 238.4 bits (607), Expect = 4.8e-59
Identity = 124/141 (87.94%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 21  GNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLL 80
           GNG+ THC+KSNLRKFL+SRRLV STSLQSLGKR KA VV ASLEPR+NEGRRDFLK LL
Sbjct: 12  GNGMSTHCAKSNLRKFLHSRRLVLSTSLQSLGKRAKAGVVRASLEPRENEGRRDFLKLLL 71

Query: 81  GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 140
           GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEA+S
Sbjct: 72  GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAIS 131

Query: 141 PELGNRVQRVRVQQITGLAKQ 162
           PELGNRVQRVRV Q+ GL+++
Sbjct: 132 PELGNRVQRVRV-QLPGLSQE 151

[Close]

BLAST of Lag0015122 vs. NCBI nr
Match: TYK07002.1 (ATP-dependent zinc metalloprotease FTSH 2 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-58
Identity = 121/141 (85.82%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 21  GNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLL 80
           GNG+ +HC+KSNLRKFL++RR VPSTSLQSLGKR KA VV AS+EPR+NEGRRDFLK LL
Sbjct: 12  GNGMSSHCAKSNLRKFLHNRRFVPSTSLQSLGKRAKAGVVKASMEPRENEGRRDFLKLLL 71

Query: 81  GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 140
           GNVGVGTSALLG+GRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS
Sbjct: 72  GNVGVGTSALLGNGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 131

Query: 141 PELGNRVQRVRVQQITGLAKQ 162
           PELGNRVQRVRV Q+ GL+++
Sbjct: 132 PELGNRVQRVRV-QLPGLSQE 151

[Close]

BLAST of Lag0015122 vs. NCBI nr
Match: XP_008455288.1 (PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Cucumis melo] >KAA0031549.1 ATP-dependent zinc metalloprotease FTSH 2 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-58
Identity = 121/141 (85.82%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 21  GNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLL 80
           GNG+ +HC+KSNLRKFL++RR VPSTSLQSLGKR KA VV AS+EPR+NEGRRDFLK LL
Sbjct: 12  GNGMSSHCAKSNLRKFLHNRRFVPSTSLQSLGKRAKAGVVKASMEPRENEGRRDFLKLLL 71

Query: 81  GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 140
           GNVGVGTSALLG+GRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS
Sbjct: 72  GNVGVGTSALLGNGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 131

Query: 141 PELGNRVQRVRVQQITGLAKQ 162
           PELGNRVQRVRV Q+ GL+++
Sbjct: 132 PELGNRVQRVRV-QLPGLSQE 151

[Close]

BLAST of Lag0015122 vs. NCBI nr
Match: XP_022989131.1 (ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 122/141 (86.52%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 21  GNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLL 80
           GNG+ +HCSKSNLRKFLYSRRLVPSTSLQS GK  KA VV ASLE +QNEGRRDFLK LL
Sbjct: 12  GNGMPSHCSKSNLRKFLYSRRLVPSTSLQSFGKTAKAGVVKASLESKQNEGRRDFLKLLL 71

Query: 81  GNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 140
           GNVGVG+S LLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS
Sbjct: 72  GNVGVGSSVLLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVS 131

Query: 141 PELGNRVQRVRVQQITGLAKQ 162
           PELGNRVQRVRV Q+ GL+++
Sbjct: 132 PELGNRVQRVRV-QLPGLSQE 151

[Close]

BLAST of Lag0015122 vs. ExPASy Swiss-Prot
Match: O80860 (ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.7e-36
Identity = 90/143 (62.94%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 21  GNGIFTH-CSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLE-PRQNEGRRDFLKF 80
           GNG+  +  +K  L K    R+    TS  S+ +  K  VV ASL+  ++ EGRRDFLK 
Sbjct: 10  GNGLSVNTTTKQRLSKHFSGRQ----TSFSSVIRTSKVNVVKASLDGKKKQEGRRDFLKI 69

Query: 81  LLGNVGVGTSALLGSGRANADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEA 140
           LLGN GVG   L+ SG+ANAD+QGVSSSRMSYSRFLEYLDKDRV KVDL+ENGTIAIVEA
Sbjct: 70  LLGNAGVG---LVASGKANADEQGVSSSRMSYSRFLEYLDKDRVNKVDLYENGTIAIVEA 129

Query: 141 VSPELGNRVQRVRVQQITGLAKQ 162
           VSPELGNRV+RVRV Q+ GL+++
Sbjct: 130 VSPELGNRVERVRV-QLPGLSQE 144

[Close]

BLAST of Lag0015122 vs. ExPASy Swiss-Prot
Match: Q655S1 (ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-35
Identity = 82/125 (65.60%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 37  LYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLLGNVGVGTSALLGSGRA 96
           L ++  +P ++L S G   +   V ASLE + N+ RR FLK  LGN+GVG   LLG+ RA
Sbjct: 8   LAAKTPLPFSTLPSSGVAQRPVSVTASLEHKTNDARRKFLKLALGNLGVGLPTLLGAKRA 67

Query: 97  NADDQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQQIT 156
            A++QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEA+SPELGNRVQRVRV Q+ 
Sbjct: 68  LAEEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRV-QLP 127

Query: 157 GLAKQ 162
           GL+++
Sbjct: 128 GLSQE 131

[Close]

BLAST of Lag0015122 vs. ExPASy Swiss-Prot
Match: Q8W585 (ATP-dependent zinc metalloprotease FTSH 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.7e-33
Identity = 82/143 (57.34%), Postives = 99/143 (69.23%), Query Frame = 0


Query: 21  GNGIFTHCSKSNLRKFLYSRRLVPSTSLQSLGKRGKACVVMASLEPRQNEGRRDFLKFLL 80
           GNG+  + +K   +K               L +  K  VV ASL+ +++EGRR F K LL
Sbjct: 10  GNGLSVYTTKQRFQKL-------------GLDRTSKVTVVKASLDEKKHEGRRGFFKLLL 69

Query: 81  GNVGVGTSALLGSGRANADD--QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEA 140
           GN   G   LL SG ANAD+  QGVSSSRMSYSRFLEYLDK RV+KVDL+ENGTIAIVEA
Sbjct: 70  GNAAAGV-GLLASGNANADEQGQGVSSSRMSYSRFLEYLDKGRVEKVDLYENGTIAIVEA 129

Query: 141 VSPELGNRVQRVRVQQITGLAKQ 162
           VSPELGNR+QRVRV Q+ GL+++
Sbjct: 130 VSPELGNRIQRVRV-QLPGLSQE 137

[Close]

BLAST of Lag0015122 vs. ExPASy Swiss-Prot
Match: P51327 (ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea OX=2787 GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 103 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQ 154
           ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEAV PELGNRVQR+RV+
Sbjct: 38  IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVE 88

[Close]

BLAST of Lag0015122 vs. ExPASy Swiss-Prot
Match: Q1XDF9 (ATP-dependent zinc metalloprotease FtsH OS=Pyropia yezoensis OX=2788 GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 103 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRVQRVRVQ 154
           ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEAV PELGNRVQR+RV+
Sbjct: 38  IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVE 88

The following BLAST results are available for this feature:

BLAST of Lag0015122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887816.1	3.3e-60	89.36	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Benincasa hispida] >XP...	[more]
XP_022147949.1	4.8e-59	87.94	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Momordica charantia] >...	[more]
TYK07002.1	1.8e-58	85.82	ATP-dependent zinc metalloprotease FTSH 2 [Cucumis melo var. makuwa]	[more]
XP_008455288.1	1.8e-58	85.82	PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Cucumis mel...	[more]
XP_022989131.1	1.5e-57	86.52	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Lag0015122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80860	2.7e-36	62.94	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana...	[more]
Q655S1	1.0e-35	65.60	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8W585	4.7e-33	57.34	ATP-dependent zinc metalloprotease FTSH 8, chloroplastic OS=Arabidopsis thaliana...	[more]
P51327	7.1e-13	70.59	ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea OX=2787 GN=ftsH PE=...	[more]
Q1XDF9	7.1e-13	70.59	ATP-dependent zinc metalloprotease FtsH OS=Pyropia yezoensis OX=2788 GN=ftsH PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23076:SF100	ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC	coord: 17..160
None	No IPR available	PANTHER	PTHR23076	METALLOPROTEASE M41 FTSH	coord: 17..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015122.1	Lag0015122.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding