Lag0015095 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015095
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr12: 7524842 .. 7526998 (+)
RNA-Seq Expression	Lag0015095
Synteny	Lag0015095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGATTCAGCCTCGACGGTGACGTGGCGTTCCAGCTCGACCGTTTTGGCTTGTTTCAGATTTGTTTTTCGGCGCGAAACTGACGGTGACATGAACTCCCCTCCCAATTTCAGTTTTGAGGAAAAAGAAAGAAAGAAGAAAGTTGAGAAGGAAGAAAATAAGAAGTGTTTTGTGGCCTTTTTGCTCGGAGACGATGACGACGACGAAGAAGAGGTTTCAGATTTGGGCGAATTCGTTATTATTATTTTTTTTTAACAATTAAAGAAGAAAGGGAAGGGAGGAAGAGAGTGAAGAAGAAAAAAAAGAAAGGGAAAAATGTCATCGATAGCTGCCACCGGCAGAGGCCGGGTTGCAAGTCCATTAGGGTTTGAGAAGAATGGGTGAAGAAGTGGGAGGAGGAAAGAAAAATGAAAGAAATAAAAAAAAGTAATAATATTTTTATTAATTTAATATTTTTTTTAAAAAAAAAATAGTGCCACATCAGCAAGCCGATAGTTTTTAATGGAGAAATGAATGGAGAGACTAAAATGAAACGAAATGATCCAAACCTTAAGGGCTAAATTGTCGACTTTGAAAACTCAGGGACCAAAATGAAACCTAACCCAAACCTCAAAGATTAAAAGTGTATTTTTTCCAAAAAAAAAAAAAAACATATAATATAGTAAAGAATATCAAATTAGAACTTGAGTAAATATTAAATATGTATAGATTCTTGTTGATCTCAAAAAAAAAAAAAAAAAAAGATTCTTGTTTGATTATGTTGTCGAAAAAAAAAAGATTCTTTGTTTGATAGGTTGTTAGGTAGGTGCACATTCGGCTTTGAAGTTCTTCCACACCTTTATAATTTGAAATTCCAAGGGGTGTTTGGGACGCGAAATTAGTTATAATAATCGATGGTTATTATAATCTGGGGGTTATAATAATTTGTGGAGTTAAATAGTCTGTGTTTGAGGTGCATATTATTTTAGTATAGCATAAAATAATCTGTGTTTGGGATGCAGATTATTTTAGTCTGGGATAAAATAGCATGTGTTTGGTGTTAAGGAAGCTCACTAAGTCACATTTTTCTCACGTGCCTTGCTTTCTGTTTTTATGTTAGTTATTGGGTATTCTTCATCTGTTTTTCTGTTGTACTGGTTTTTAATATACTTACAGGAGTTTTTCTCCCTCCATGTATATATTCCATTCTCTTGATGATGGAATTATGATTTGAGATAGAATGAATAATATGGAAGGGTTTCTCCTGTAGATTTCTTCTCCCTTTCTCTCTAAGTTTACATGGTATCAGAGCCCAAGTCTTGCGACCAATCTCGATCCGTGTTGTTTGGGTAATTGCTTTGGAGTTAGTCAACTGCTCGTCTCCACCGGTGCAATCCTAAAGCGTCGATGGATTCCTCAAGTACAGAGATCCAAGCAGCCAGCGATCTTGAAAATCAGACAAACTCAGTTGTCAATCCTGGTAATAAAATCTCCACAGTGAAGCTTAATAATGATAATTTTCTGATGTGGAAGGTACAGATTGAATTTGCCCTAGAAGGCCACAGTCTTGGACAGTTTATCGCAAAGGATTACAATTCTCCACCAGAGAAAATACCTGTAAGTGAAGGCTCAACTATTATGAAAGTTAATCCTGAATTTGTGAAATGGAAGAAACAGGATAGTCTAATTTCATCTTGGCTTCTTGGATCCATGTCAGAGAATATTCTAGAGCAAGTAATACATTGCAAAACTGCGAAAGAAATCTGGAATTGTTTGTTTCAAATTTTTAATTCAAGAAATAGAGCACAAATAATGAGAATGAAGTCAAAACTACAGTCTCTACAGAAAGATTCTCTGTCTTTAAATGATTATTTTTCGCAAGTGAAGAAATGTGTTGATGCCCTAGCAGCTGTAGGCAAAGAAATAGATTCAGAAGATCATATCATGTATATTTTGAATGGGCTAGGTTCAGAATATGAGTCTATGGTATCTGCACTAACTACTTCTACAGATCAGCAAAGTGTTCAAGATGTTATGGCTTATCTCCTCACTCATGAAAATCGCATTGAGAGTAAGCTAAAGACGGTAAATACAGACGGTACACAACCTTCAGCTAATCTCATGACTCAGAATCAACATAGTGCAGACACTGATCCTCAGAAGAATAATAATTAG

mRNA sequence

ATGTGTGATTCAGCCTCGACGGTGACGTGGCGTTCCAGCTCGACCGTTTTGGCTTGTTTCAGATTTGTTTTTCGGCGCGAAACTGACGGTGACATGAACTCCCCTCCCAATTTCAGTTTTGAGGAAAAAGAAAGAAAGAAGAAAGTTGAGAAGGAAGAAAATAAGAAGTGTTTTGTGGCCTTTTTGCTCGGAGACGATGACGACGACGAAGAAGAGTCAACTGCTCGTCTCCACCGGTGCAATCCTAAAGCGTCGATGGATTCCTCAAGTACAGAGATCCAAGCAGCCAGCGATCTTGAAAATCAGACAAACTCAGTTGTCAATCCTGGTAATAAAATCTCCACAGTGAAGCTTAATAATGATAATTTTCTGATGTGGAAGGTACAGATTGAATTTGCCCTAGAAGGCCACAGTCTTGGACAGTTTATCGCAAAGGATTACAATTCTCCACCAGAGAAAATACCTGTAAGTGAAGGCTCAACTATTATGAAAGTTAATCCTGAATTTGTGAAATGGAAGAAACAGGATAGTCTAATTTCATCTTGGCTTCTTGGATCCATGTCAGAGAATATTCTAGAGCAAGTAATACATTGCAAAACTGCGAAAGAAATCTGGAATTGTTTGTTTCAAATTTTTAATTCAAGAAATAGAGCACAAATAATGAGAATGAAGTCAAAACTACAGTCTCTACAGAAAGATTCTCTGTCTTTAAATGATTATTTTTCGCAAGTGAAGAAATGTGTTGATGCCCTAGCAGCTGTAGGCAAAGAAATAGATTCAGAAGATCATATCATGTATATTTTGAATGGGCTAGGTTCAGAATATGAGTCTATGGTATCTGCACTAACTACTTCTACAGATCAGCAAAGTGTTCAAGATGTTATGGCTTATCTCCTCACTCATGAAAATCGCATTGAGAGTAAGCTAAAGACGGTAAATACAGACGGTACACAACCTTCAGCTAATCTCATGACTCAGAATCAACATAGTGCAGACACTGATCCTCAGAAGAATAATAATTAG

Coding sequence (CDS)

ATGTGTGATTCAGCCTCGACGGTGACGTGGCGTTCCAGCTCGACCGTTTTGGCTTGTTTCAGATTTGTTTTTCGGCGCGAAACTGACGGTGACATGAACTCCCCTCCCAATTTCAGTTTTGAGGAAAAAGAAAGAAAGAAGAAAGTTGAGAAGGAAGAAAATAAGAAGTGTTTTGTGGCCTTTTTGCTCGGAGACGATGACGACGACGAAGAAGAGTCAACTGCTCGTCTCCACCGGTGCAATCCTAAAGCGTCGATGGATTCCTCAAGTACAGAGATCCAAGCAGCCAGCGATCTTGAAAATCAGACAAACTCAGTTGTCAATCCTGGTAATAAAATCTCCACAGTGAAGCTTAATAATGATAATTTTCTGATGTGGAAGGTACAGATTGAATTTGCCCTAGAAGGCCACAGTCTTGGACAGTTTATCGCAAAGGATTACAATTCTCCACCAGAGAAAATACCTGTAAGTGAAGGCTCAACTATTATGAAAGTTAATCCTGAATTTGTGAAATGGAAGAAACAGGATAGTCTAATTTCATCTTGGCTTCTTGGATCCATGTCAGAGAATATTCTAGAGCAAGTAATACATTGCAAAACTGCGAAAGAAATCTGGAATTGTTTGTTTCAAATTTTTAATTCAAGAAATAGAGCACAAATAATGAGAATGAAGTCAAAACTACAGTCTCTACAGAAAGATTCTCTGTCTTTAAATGATTATTTTTCGCAAGTGAAGAAATGTGTTGATGCCCTAGCAGCTGTAGGCAAAGAAATAGATTCAGAAGATCATATCATGTATATTTTGAATGGGCTAGGTTCAGAATATGAGTCTATGGTATCTGCACTAACTACTTCTACAGATCAGCAAAGTGTTCAAGATGTTATGGCTTATCTCCTCACTCATGAAAATCGCATTGAGAGTAAGCTAAAGACGGTAAATACAGACGGTACACAACCTTCAGCTAATCTCATGACTCAGAATCAACATAGTGCAGACACTGATCCTCAGAAGAATAATAATTAG

Protein sequence

MCDSASTVTWRSSSTVLACFRFVFRRETDGDMNSPPNFSFEEKERKKKVEKEENKKCFVAFLLGDDDDDEEESTARLHRCNPKASMDSSSTEIQAASDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSEGSTIMKVNPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEYESMVSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQNQHSADTDPQKNNN

Homology

[Close]

BLAST of Lag0015095 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 5.2e-51
Identity = 117/249 (46.99%), Postives = 167/249 (67.07%), Query Frame = 0


Query: 97  SDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPV 156
           ++  +  N +   GNKIS VKLN+D FL+WK QI  ALE + L  F+  + + PP K  +
Sbjct: 13  TEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE-SEPPSKYLI 72

Query: 157 SEGSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIF 216
           S  S+        NP +  WK+QD LISSWLLGSMSE IL Q++HCK+AKEIW  L  IF
Sbjct: 73  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 132

Query: 217 NSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLG 276
           +SR  AQ M+ K+KL +++K S+ L +YF ++ +CVDALA++ K + S+DHI+YIL GLG
Sbjct: 133 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 192

Query: 277 SEYESMVSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQ-NQHSA 336
           S+Y+SM+S ++  TD  SVQ+VM+ LLT E++ ESKL    ++   PS N++TQ  +  A
Sbjct: 193 SDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGA 252

Query: 337 DTDPQKNNN 341
           ++  + N N
Sbjct: 253 ESYIRTNQN 257

[Close]

BLAST of Lag0015095 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 5.2e-51
Identity = 117/249 (46.99%), Postives = 167/249 (67.07%), Query Frame = 0


Query: 97  SDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPV 156
           ++  +  N +   GNKIS VKLN+D FL+WK QI  ALE + L  F+  + + PP K  +
Sbjct: 13  TEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE-SEPPSKYLI 72

Query: 157 SEGSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIF 216
           S  S+        NP +  WK+QD LISSWLLGSMSE IL Q++HCK+AKEIW  L  IF
Sbjct: 73  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 132

Query: 217 NSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLG 276
           +SR  AQ M+ K+KL +++K S+ L +YF ++ +CVDALA++ K + S+DHI+YIL GLG
Sbjct: 133 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 192

Query: 277 SEYESMVSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQ-NQHSA 336
           S+Y+SM+S ++  TD  SVQ+VM+ LLT E++ ESKL    ++   PS N++TQ  +  A
Sbjct: 193 SDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGA 252

Query: 337 DTDPQKNNN 341
           ++  + N N
Sbjct: 253 ESYIRTNQN 257

[Close]

BLAST of Lag0015095 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 6.8e-51
Identity = 109/215 (50.70%), Postives = 150/215 (69.77%), Query Frame = 0


Query: 99  LENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSE 158
           +EN   S+   GNKIS VKL++DNFL+WK QI  ALE + L  F   +   PP K   S 
Sbjct: 10  VENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESEL-EPPSKYLTST 69

Query: 159 GSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNS 218
           GS+        NPE+  WK+ + LIS WLLGSMSE IL Q++HCK+AKEIW  L  IF+S
Sbjct: 70  GSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSS 129

Query: 219 RNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSE 278
           R  AQ M+ K+KL +++K S+SL +YF ++++CVDALA++ K + S+DHI+YIL GLG +
Sbjct: 130 RYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGYD 189

Query: 279 YESMVSALTTSTDQQSVQDVMAYLLTHENRIESKL 310
           Y+SM+S ++  TD  S+Q+VM+ LLT E++ ESKL
Sbjct: 190 YQSMISIISARTDSPSIQEVMSLLLTQESQNESKL 223

[Close]

BLAST of Lag0015095 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 9.2e-48
Identity = 107/241 (44.40%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 102 QTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSE--- 161
           Q +  +NPG+K+S V+LN+DN L+WK QI  AL+G+ L  +I  + ++P + +  +E   
Sbjct: 17  QASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDES 76

Query: 162 GSTIMKVNPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNSRNRA 221
            S+ ++ NP + +W KQD LIS+WLLGSM+E+IL Q++ CK+A+EIW  L  +F SR  A
Sbjct: 77  SSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLA 136

Query: 222 QIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEYESM 281
           ++M++K KL++ +K +LSL DYF ++K  VD+LA  GK++ +EDHIM+IL GLG E++++
Sbjct: 137 RVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDAI 196

Query: 282 VSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQNQHSADTDPQKN 340
           +S +T     Q++Q+V + LL  E R E  L  +N+DG+ PS NL T N  S     +KN
Sbjct: 197 ISVITARNMPQTLQEVCSLLLQQEGRNERNL--INSDGSLPSVNL-TLNDSS-----KKN 249

[Close]

BLAST of Lag0015095 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 4.8e-44
Identity = 96/199 (48.24%), Postives = 136/199 (68.34%), Query Frame = 0


Query: 97  SDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPV 156
           ++  +  N +    NKIS VKL++DNFL+WK QI  ALE + L  F+  + + PP K  +
Sbjct: 13  TEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESE-SEPPSKYLI 72

Query: 157 SEGSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIF 216
           S GS+        NP +  WK+QD LISSWLLGSMSE IL Q++HCK+AKEIW  L  IF
Sbjct: 73  STGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIF 132

Query: 217 NSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLG 276
           +SR  AQ M+ K+KL +++K+S+ L +YF +++  VDALA++ K + S+DHI+YIL GLG
Sbjct: 133 SSRYLAQAMKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDDHILYILAGLG 192

Query: 277 SEYESMVSALTTSTDQQSV 292
           S+Y+SM+S +   T+  SV
Sbjct: 193 SDYQSMISVIFPRTESPSV 210

[Close]

BLAST of Lag0015095 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-20
Identity = 67/246 (27.24%), Postives = 124/246 (50.41%), Query Frame = 0


Query: 96  ASDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIP 155
           A +L     S++N  N  +  KL + N+LMW  Q+    +G+ L  F+      PP  I 
Sbjct: 5   AEELVLNNTSILNV-NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIG 64

Query: 156 VSEGSTIMKVNPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNSR 215
                   +VNP++ +WK+QD LI S +LG++S ++   V    TA +IW  L +I+ + 
Sbjct: 65  TDAAP---RVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANP 124

Query: 216 NRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEY 275
           +   + +++++L+   K + +++DY   +    D LA +GK +D ++ +  +L  L  EY
Sbjct: 125 SYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEY 184

Query: 276 ESMVSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQP-SANLMTQNQHSADTD 335
           + ++  +       ++ ++   LL H    ESK+  V++    P +AN ++   H   T 
Sbjct: 185 KPVIDQIAAKDTPPTLTEIHERLLNH----ESKILAVSSATVIPITANAVS---HRNTTT 239

Query: 336 PQKNNN 341
              NNN
Sbjct: 245 TNNNNN 239

[Close]

BLAST of Lag0015095 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-14
Identity = 60/238 (25.21%), Postives = 113/238 (47.48%), Query Frame = 0


Query: 111 NKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSEGSTIMKVNPEFV 170
           N  +  KL + N+LMW  Q+    +G+ L  F+      PP  I       + +VNP++ 
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGT---DAVPRVNPDYT 78

Query: 171 KWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNSRNRAQIMRMKSKLQSL 230
           +W++QD LI S +LG++S ++   V    TA +IW  L +I+ + +   + +++   +  
Sbjct: 79  RWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRFITR-- 138

Query: 231 QKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEYESMVSALTTSTDQQS 290
                             D LA +GK +D ++ +  +L  L  +Y+ ++  +       S
Sbjct: 139 -----------------FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPS 198

Query: 291 VQDVMAYLLTHENRIESKLKTVNTDGTQP-SANLMT-------QNQHSADTDPQKNNN 341
           + ++   L+   NR ESKL  +N+    P +AN++T       +NQ++   +   NNN
Sbjct: 199 LTEIHERLI---NR-ESKLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNN 230

[Close]

BLAST of Lag0015095 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-51
Identity = 117/249 (46.99%), Postives = 167/249 (67.07%), Query Frame = 0


Query: 97  SDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPV 156
           ++  +  N +   GNKIS VKLN+D FL+WK QI  ALE + L  F+  + + PP K  +
Sbjct: 13  TEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE-SEPPSKYLI 72

Query: 157 SEGSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIF 216
           S  S+        NP +  WK+QD LISSWLLGSMSE IL Q++HCK+AKEIW  L  IF
Sbjct: 73  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 132

Query: 217 NSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLG 276
           +SR  AQ M+ K+KL +++K S+ L +YF ++ +CVDALA++ K + S+DHI+YIL GLG
Sbjct: 133 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 192

Query: 277 SEYESMVSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQ-NQHSA 336
           S+Y+SM+S ++  TD  SVQ+VM+ LLT E++ ESKL    ++   PS N++TQ  +  A
Sbjct: 193 SDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGA 252

Query: 337 DTDPQKNNN 341
           ++  + N N
Sbjct: 253 ESYIRTNQN 257

[Close]

BLAST of Lag0015095 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-51
Identity = 117/249 (46.99%), Postives = 167/249 (67.07%), Query Frame = 0


Query: 97  SDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPV 156
           ++  +  N +   GNKIS VKLN+D FL+WK QI  ALE + L  F+  + + PP K  +
Sbjct: 13  TEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE-SEPPSKYLI 72

Query: 157 SEGSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIF 216
           S  S+        NP +  WK+QD LISSWLLGSMSE IL Q++HCK+AKEIW  L  IF
Sbjct: 73  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 132

Query: 217 NSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLG 276
           +SR  AQ M+ K+KL +++K S+ L +YF ++ +CVDALA++ K + S+DHI+YIL GLG
Sbjct: 133 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 192

Query: 277 SEYESMVSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQ-NQHSA 336
           S+Y+SM+S ++  TD  SVQ+VM+ LLT E++ ESKL    ++   PS N++TQ  +  A
Sbjct: 193 SDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL---ISETALPSVNIVTQTTEKGA 252

Query: 337 DTDPQKNNN 341
           ++  + N N
Sbjct: 253 ESYIRTNQN 257

[Close]

BLAST of Lag0015095 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.3e-51
Identity = 109/215 (50.70%), Postives = 150/215 (69.77%), Query Frame = 0


Query: 99  LENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSE 158
           +EN   S+   GNKIS VKL++DNFL+WK QI  ALE + L  F   +   PP K   S 
Sbjct: 10  VENTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESEL-EPPSKYLTST 69

Query: 159 GSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNS 218
           GS+        NPE+  WK+ + LIS WLLGSMSE IL Q++HCK+AKEIW  L  IF+S
Sbjct: 70  GSSSTSATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSS 129

Query: 219 RNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSE 278
           R  AQ M+ K+KL +++K S+SL +YF ++++CVDALA++ K + S+DHI+YIL GLG +
Sbjct: 130 RYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGYD 189

Query: 279 YESMVSALTTSTDQQSVQDVMAYLLTHENRIESKL 310
           Y+SM+S ++  TD  S+Q+VM+ LLT E++ ESKL
Sbjct: 190 YQSMISIISARTDSPSIQEVMSLLLTQESQNESKL 223

[Close]

BLAST of Lag0015095 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.5e-48
Identity = 107/241 (44.40%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 102 QTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSE--- 161
           Q +  +NPG+K+S V+LN+DN L+WK QI  AL+G+ L  +I  + ++P + +  +E   
Sbjct: 17  QASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDES 76

Query: 162 GSTIMKVNPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNSRNRA 221
            S+ ++ NP + +W KQD LIS+WLLGSM+E+IL Q++ CK+A+EIW  L  +F SR  A
Sbjct: 77  SSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLA 136

Query: 222 QIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEYESM 281
           ++M++K KL++ +K +LSL DYF ++K  VD+LA  GK++ +EDHIM+IL GLG E++++
Sbjct: 137 RVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDAI 196

Query: 282 VSALTTSTDQQSVQDVMAYLLTHENRIESKLKTVNTDGTQPSANLMTQNQHSADTDPQKN 340
           +S +T     Q++Q+V + LL  E R E  L  +N+DG+ PS NL T N  S     +KN
Sbjct: 197 ISVITARNMPQTLQEVCSLLLQQEGRNERNL--INSDGSLPSVNL-TLNDSS-----KKN 249

[Close]

BLAST of Lag0015095 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.3e-44
Identity = 96/199 (48.24%), Postives = 136/199 (68.34%), Query Frame = 0


Query: 97  SDLENQTNSVVNPGNKISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPV 156
           ++  +  N +    NKIS VKL++DNFL+WK QI  ALE + L  F+  + + PP K  +
Sbjct: 13  TEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESE-SEPPSKYLI 72

Query: 157 SEGSTIMKV----NPEFVKWKKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIF 216
           S GS+        NP +  WK+QD LISSWLLGSMSE IL Q++HCK+AKEIW  L  IF
Sbjct: 73  STGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIF 132

Query: 217 NSRNRAQIMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLG 276
           +SR  AQ M+ K+KL +++K+S+ L +YF +++  VDALA++ K + S+DHI+YIL GLG
Sbjct: 133 SSRYLAQAMKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDDHILYILAGLG 192

Query: 277 SEYESMVSALTTSTDQQSV 292
           S+Y+SM+S +   T+  SV
Sbjct: 193 SDYQSMISVIFPRTESPSV 210

[Close]

BLAST of Lag0015095 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-14
Identity = 57/229 (24.89%), Postives = 117/229 (51.09%), Query Frame = 0


Query: 115 TVKLNNDNFLMWKVQIE-FALEGHSLGQFIAKDYNSPPEKIPVSEGSTIMKVNPEFVKWK 174
           T+ LN  N+ +W+   E   L    LG     D +S P   P++E            +WK
Sbjct: 25  TLDLNKLNYDVWRELFETLCLSFGVLGHI---DGSSTP--TPMTE-----------KRWK 84

Query: 175 KQDSLISSWLLGSMSENILEQVIHCK-TAKEIWNCLFQIFNSRNRAQIMRMKSKLQSLQK 234
           ++D L+  W+ G++++++L+ +I    TA+++W  L  +F     A+ ++ +++L++   
Sbjct: 85  ERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTI 144

Query: 235 DSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEYESMVSALTTSTDQQSVQ 294
           D LS+++Y  ++K   D L  V   I     +M++LNGL  +Y+ +++ +   +   S  
Sbjct: 145 DDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFT 204

Query: 295 DVMAYLLTHENRIESKLKTVNTDGTQPS-ANLMTQNQHSADTDPQKNNN 341
           +  + LL  E+R+ +K K+  +    PS +N++       +  PQ+ +N
Sbjct: 205 EARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHN 237

[Close]

BLAST of Lag0015095 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-12
Identity = 35/151 (23.18%), Postives = 79/151 (52.32%), Query Frame = 0


Query: 161 TIMKVNPEFVKWKKQDSLISSWLLGSMSENILE-QVIHCKTAKEIWNCLFQIFNSRNRAQ 220
           T++  N   V W+K+D ++   L G+++    +   +   T+++IW  +   F +   A+
Sbjct: 54  TLLPTNANDVNWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDAR 113

Query: 221 IMRMKSKLQSLQKDSLSLNDYFSQVKKCVDALAAVGKEIDSEDHIMYILNGLGSEYESMV 280
            +R+ S+L++     + + DY+ ++KK  D+L  V   +   + +MY+LNGL  ++++++
Sbjct: 114 ALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNII 173

Query: 281 SALTTSTDQQSVQDVMAYLLTHENRIESKLK 311
           + +       S  D    L   E+R++  +K
Sbjct: 174 NVIKHRQPFPSFDDAATMLQEEEDRLKRAIK 204

[Close]

BLAST of Lag0015095 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 7.6e-08
Identity = 29/134 (21.64%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 113 ISTVKLNNDNFLMWKVQIEFALEGHSLGQFIAKDYNSPPEKIPVSEGSTIMKVNPEFVKW 172
           I  +  + DN++ WK++    L        + K +      +P  +       +P +  W
Sbjct: 32  IQKLSKDEDNYVAWKIRFRSFLR-------VTKKFGFIDGTLPKPD-----PFSPLYQPW 91

Query: 173 KKQDSLISSWLLGSMSENILEQVIHCKTAKEIWNCLFQIFNSRNRAQIMRMKSKLQSLQK 232
           ++ ++++  WL+ SM++ +LE V++ +TA ++W  L ++F      +I +++ +L +L++
Sbjct: 92  EQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQ 151

Query: 233 DSLSLNDYFSQVKK 247
              S+ +YF ++ K
Sbjct: 152 GGDSVEEYFGKLSK 153

The following BLAST results are available for this feature:

BLAST of Lag0015095 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048297.1	5.2e-51	46.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	5.2e-51	46.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0053143.1	6.8e-51	50.70	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
XP_022154487.1	9.2e-48	44.40	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0067213.1	4.8e-44	48.24	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0015095 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.0e-20	27.24	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.1e-14	25.21	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0015095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U233	2.5e-51	46.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	2.5e-51	46.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UB21	3.3e-51	50.70	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DLT9	4.5e-48	44.40	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7VGJ8	2.3e-44	48.24	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Lag0015095 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	2.5e-14	24.89	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	8.7e-12	23.18	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G21280.1	7.6e-08	21.64	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 213..233
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 172..305 e-value: 4.0E-26 score: 91.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..106
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 113..332
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 113..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015095.1	Lag0015095.1	mRNA