Lag0015085 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015085
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	chr12: 7448131 .. 7448480 (-)
RNA-Seq Expression	Lag0015085
Synteny	Lag0015085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCATCGCCGCCGCATCGGCCACCGCCCTGTCAGCGCCGCCGTCCTCCGCCGGCCTCACCTTCTCCCATCAGGTAAAACACACACAAATTAAACTAAACTCTCTTTTCTCACAGACCCATTTTAATTTATAATCAAAGCTCTTGAGAAACAGAATTGTTGGGACTAATCGCTGTGGGACGAATTTCAGGAAAAGGTCATCAGAGACGAGGAAATTAGTCCGTCGAGAAGATCATCATCGCCGCCGTCGACGGCGGCGGATCAGTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTGGTCACTGCTCATAGATGA

mRNA sequence

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCATCGCCGCCGCATCGGCCACCGCCCTGTCAGCGCCGCCGTCCTCCGCCGGCCTCACCTTCTCCCATCAGGAAAAGGTCATCAGAGACGAGGAAATTAGTCCGTCGAGAAGATCATCATCGCCGCCGTCGACGGCGGCGGATCAGTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTGGTCACTGCTCATAGATGA

Coding sequence (CDS)

ATGAAGAAAACAGGGCTGTTCGCCGCCTCCATCGCCGCCGCATCGGCCACCGCCCTGTCAGCGCCGCCGTCCTCCGCCGGCCTCACCTTCTCCCATCAGGAAAAGGTCATCAGAGACGAGGAAATTAGTCCGTCGAGAAGATCATCATCGCCGCCGTCGACGGCGGCGGATCAGTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTGGTCACTGCTCATAGATGA

Protein sequence

MKKTGLFAASIAAASATALSAPPSSAGLTFSHQEKVIRDEEISPSRRSSSPPSTAADQFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Lag0015085 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 118.2 bits (295), Expect = 3.0e-23
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MKKTGLFAASIAAASATALSAPPSSAGL---TFSHQEKVIRDEEI-SPSRRSSSPPSTAA 60
          MKKTGLFAAS+AAASATALSAPPSSAG+   TFSHQE+V RD+EI +PSRR  SPPSTAA
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRR--SPPSTAA 60

Query: 61 DQFAPRFDGLRFIETLVTAHR 78
          +QFAPRFDGLRFIETLVTAHR
Sbjct: 61 EQFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Lag0015085 vs. NCBI nr
Match: XP_022969313.1 (uncharacterized protein LOC111468357 [Cucurbita maxima])

HSP 1 Score: 117.1 bits (292), Expect = 6.8e-23
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MKKTGLFAASIAAASATALSAPPSSAGL---TFSHQEKV-IRDEEISPSRRSSSPPSTAA 60
          MKKTGLFAAS+AAASATALSAP SSAG+   TFSHQEKV IRDEE SPSR   SPPSTAA
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSR--ISPPSTAA 62

Query: 61 DQFAPRFDGLRFIETLVTAHR 78
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 63 DQFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Lag0015085 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MKKTGLFAASIAAASATALSAPPSSAGL---TFSHQEKVI-RDEEISPSRRSSSPPSTAA 60
          MKKTGLFAAS+AAASATALSAP SS G+   TFSHQEKVI RDEE SPSR   SPPSTAA
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSR--ISPPSTAA 62

Query: 61 DQFAPRFDGLRFIETLVTAHR 78
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 63 DQFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Lag0015085 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MKKTGLFAASIAAASATALSAPPSSAGL---TFSHQEKVI-RDEEISPSRRSSSPPSTAA 60
          MKKTGLFAAS+AAASATALSAP SSAG+   TFSHQEKVI RDEE SPSR   SPPSTA 
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSR--ISPPSTAP 62

Query: 61 DQFAPRFDGLRFIETLVTAHR 78
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 63 DQFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Lag0015085 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_020428 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MKKTGLFAASIAAASATALSAPPSSAGL---TFSHQEKVIRDEE-ISPSRRSSSPPSTAA 60
          MKKTGLFAAS+AAASATALSAPP+S GL    FS QEKV RDEE  +P+RR  SPPSTAA
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARR--SPPSTAA 60

Query: 61 DQFAPRFDGLRFIETLVTAHR 78
          DQFAPRFDGLRFIETLVTAHR
Sbjct: 61 DQFAPRFDGLRFIETLVTAHR 79

The following BLAST results are available for this feature:

BLAST of Lag0015085 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888462.1	3.0e-23	83.95	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
XP_022969313.1	6.8e-23	86.42	uncharacterized protein LOC111468357 [Cucurbita maxima]	[more]
XP_023554654.1	1.5e-22	85.19	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022952670.1	2.0e-22	85.19	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]
KGN43613.1	2.2e-21	81.48	hypothetical protein Csa_020428 [Cucumis sativus]	[more]

BLAST of Lag0015085 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..58
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015085.1	Lag0015085.1	mRNA