Lag0015079 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015079
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 7364334 .. 7366636 (+)
RNA-Seq Expression	Lag0015079
Synteny	Lag0015079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGATTTGAGGAGCAAGTGAAGGAAAGGGCAAAGGAATTGAAGAGCTTGTTCAAGAAAGGAGTGAAGATTGTGGGAGAAACTTGCAAGAAAGGCTGGCACAAAGTCAAGCAATTGAAAGGCTGAAAGGCAAAACTTCTTATATAGGTTGATTCTTCTGTAAAATTTAGGGGTTTTTTTTTTTTTTTCATTTTTTAAGGTTTTGTTGTGTTGGTTTAAGGATTTGTGTTTGGTTTAATGTTGTTTGAGATTGGTGTTTTGGGTTTTGTTTTATTGAATGGTTAATATTTTGATCGAGTGTTTTTGTGGGTTTGTTGATTTGAAGTTCTTGTTGCTTTCGTTGATGTTGAATTTGAATTGAATGTCCTTGAACTCCTTGATGGCAATTAAATTGGAGTTATTTTGTTCATAACATTTTTGGGTTTTGGGTATTAGAGAAGAACTGCATAAAGTTTCTGAAATTGCAAAGAAAAAAAAAATGTGGCTGTTCCAATATAGTACACCTTAGGCGAAACGATCAACTTCAATCTCAGACTAATGGTTAGTATTTCCAATTATTTAGGTCCCGGTTGATAATCCTTTAGATTTCATTTGATAACCATTTGATTTTTGGTTTTTTATTTTTGAAATTATGCTGGTTTTCTCACAAATTTTTTACAATGGTTTTCATCTTTGTTAAAGACACCTTTGAATTCCTAGCTAAATTCTAGAAACAAAAAAACAAGTTTTTGAAATTTTTTTTTTTTTTTTAGTTTTCAAAATTTGACTTGATTTTTTAAAACAAAGGGAAAATGTAGATAACAAAACAAATAAACTTGTAGGTAAAAGTAGTGTTTGTAGGCTTAATTTTCAAAAACAAAAAAACGAAATGGTTACCAAACAAGGCCTTAATTTTTGGTTTTTAGTTTTTGAAAATCAAACTTACAAACACTACTTTTAACTCCAAGTTTCTTTCTTTTGTAATCTATCTTCATCTCATGTTTTCAAAAAAACAAGTCAATTTTTTAAAACTAAAAAAAATATATAGTTTTCAAAAACTTGTTTTTGTGTTTTTAAATTTGGTTAGGATTTCAAAGGTGTTGTTGCCAAAAATGAAAACCATAATAAGAAAAGTGGAAAAAAATAAATATAATTTTAAAAAACTAAAAACAAAAATTCAAATGGTTATCAAAGGGTCTTATTTATGTATTTTGTGATTTCAACCACGAATGATTCAAATTTTTAACCTTTTATTCTCAAATCATATTTTGTGTTTGGGATTTTGACACTTTAAAAAAAGATTATTTATACAAAATATCTCGAAAACTTTAGAGAATAAGTTTTAATCATTTATATATCAGACTTTGAAAATAATACTTTTAGTTTAGTTTGGAGTTTCAAACGAAAATATAGTAAAATATATACTATGTTATTTGAAAACATTTATTTTTCTTTCAAATAGATCAAAATGGAAGCTCTAACTATTAGATATAAATGGTGAGTTCTTCACTCAATTCTTAACATGGTGCCTCTTGATAACATGGGGTTCCATCTCAAAAATCAATTAATAAGGAGTGAAGTAACTCATCTATCTTATAAATTGTGAGTTCTCCATATCTTTTCAATGTGAGATCCTCAACACTAACCAAGGTACAAAAAATTGAAAGGCATGCATTAACATTATTTATGATTTATAATTGTATGTTGATATGAAAAGAAACTTTTTCTTTCAAATTTAAGAACATAATTTAAAATCTACCAAATTTAAAAATATTTCATATAATTTAGTCTATAAAATAATTGACTTCACTTTAATATTATTTTAGCTCTTGAACTTGGGCTAGATGAAGGAAAAATAAGTAAGATAATTTTCTATTTGAAAAAATTTATAAAAACAAAAATAATCAAACAGATAAAAATGGGCGATTCTTTTGAAAGATATACACTTCATTAAAAAGAAAATGGGTTATGGATTTTTTTTTTTTTTTGAGACCATGGGTTATGGAATTTTAAATAGTTGATCTTTATTTAAAAATAAAATTTGATATTACTTTTGTTTTATCATTTGAAGTTTCATTTATTGGTTGGTGTTATAGGTAATTTTGGACCATTTAAATGTACAAGGAGCTGACGAGGATAACATGGCAGAAATAGGATCGAAAAACCGACTCCAGAGAATGAATAGACAAGAGGGTCGGGCCAAGTTGGCCCGACCCATATGGTCAGCCTCGGCCCAACCCCTCTGCGTAGGTCGAGCTCTTCCGCCTCCATTCGGTACGTACTGCCCTTGGCCGACTCGGTTTCGCTCGATTCAGCCCTGA

mRNA sequence

ATGGGTGGATTTGAGGAGCAAGTGAAGGAAAGGGCAAAGGAATTGAAGAGCTTGTTCAAGAAAGGAGTGAAGATTGTGGGAGAAACTTGCAAGAAAGGCTGGCACAAAGTAATTTTGGACCATTTAAATGTACAAGGAGCTGACGAGGATAACATGGCAGAAATAGGATCGAAAAACCGACTCCAGAGAATGAATAGACAAGAGGGTCGGGCCAAGTTGGCCCGACCCATATGGTCAGCCTCGGCCCAACCCCTCTGCGTAGGTCGAGCTCTTCCGCCTCCATTCGGTACGTACTGCCCTTGGCCGACTCGGTTTCGCTCGATTCAGCCCTGA

Coding sequence (CDS)

ATGGGTGGATTTGAGGAGCAAGTGAAGGAAAGGGCAAAGGAATTGAAGAGCTTGTTCAAGAAAGGAGTGAAGATTGTGGGAGAAACTTGCAAGAAAGGCTGGCACAAAGTAATTTTGGACCATTTAAATGTACAAGGAGCTGACGAGGATAACATGGCAGAAATAGGATCGAAAAACCGACTCCAGAGAATGAATAGACAAGAGGGTCGGGCCAAGTTGGCCCGACCCATATGGTCAGCCTCGGCCCAACCCCTCTGCGTAGGTCGAGCTCTTCCGCCTCCATTCGGTACGTACTGCCCTTGGCCGACTCGGTTTCGCTCGATTCAGCCCTGA

Protein sequence

MGGFEEQVKERAKELKSLFKKGVKIVGETCKKGWHKVILDHLNVQGADEDNMAEIGSKNRLQRMNRQEGRAKLARPIWSASAQPLCVGRALPPPFGTYCPWPTRFRSIQP

Homology

[Close]

BLAST of Lag0015079 vs. NCBI nr
Match: PHU12343.1 (hypothetical protein BC332_19273 [Capsicum chinense])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1  MGGFEEQVKERAKELKSLFKKGVKIVGETCKKGWHKV 38
          MGGFE+QVKERAKELKSLFKKGVKIVGE+CKKGWHKV
Sbjct: 1  MGGFEKQVKERAKELKSLFKKGVKIVGESCKKGWHKV 37

[Close]

BLAST of Lag0015079 vs. NCBI nr
Match: GFZ12922.1 (hypothetical protein Acr_23g0013070 [Actinidia rufa])

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-09
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MGGFEEQVKERAKELKSLFKKGVKIVGETCKKGWHKV 38
          MG FEEQVK+RAKELK+LFKKGVKIVGE+CKKGWHKV
Sbjct: 1  MGKFEEQVKDRAKELKTLFKKGVKIVGESCKKGWHKV 37

[Close]

BLAST of Lag0015079 vs. NCBI nr
Match: KAF7805925.1 (hypothetical protein G2W53_038086 [Senna tora])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MGGFEEQVKERAKELKSLFKKGVKIVGETCKKGWHKV 38
          MGGFEEQVK RAKE+KSLFKKGVKIVG++CKKGW+K+
Sbjct: 1  MGGFEEQVKARAKEMKSLFKKGVKIVGDSCKKGWNKI 37

[Close]

BLAST of Lag0015079 vs. NCBI nr
Match: XP_020084819.1 (uncharacterized protein LOC109707725 [Ananas comosus])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MGGFEEQVKERAKELKSLFKKGVKIVGETCKKGWHKV 38
          MGGFEEQ+KERAKELK L KKGVK+VGE+CKK WHKV
Sbjct: 1  MGGFEEQLKERAKELKHLVKKGVKVVGESCKKTWHKV 37

[Close]

BLAST of Lag0015079 vs. NCBI nr
Match: KAG4208829.1 (hypothetical protein ERO13_A03G157250v2 [Gossypium hirsutum] >TYJ43747.1 hypothetical protein E1A91_A03G173900v1 [Gossypium mustelinum])

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-08
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MGGFEEQVKERAKELKSLFKKGVKIVGETCKKGWHKV 38
          M GFE+Q+KERAKELK  FKKGVKIVGE+CKKGW+KV
Sbjct: 1  MAGFEQQIKERAKELKVFFKKGVKIVGESCKKGWYKV 37

The following BLAST results are available for this feature:

BLAST of Lag0015079 vs. NCBI nr


Match Name	E-value	Identity	Description
PHU12343.1	2.5e-10	94.59	hypothetical protein BC332_19273 [Capsicum chinense]	[more]
GFZ12922.1	3.6e-09	89.19	hypothetical protein Acr_23g0013070 [Actinidia rufa]	[more]
KAF7805925.1	1.4e-08	83.78	hypothetical protein G2W53_038086 [Senna tora]	[more]
XP_020084819.1	5.2e-08	83.78	uncharacterized protein LOC109707725 [Ananas comosus]	[more]
KAG4208829.1	8.8e-08	81.08	hypothetical protein ERO13_A03G157250v2 [Gossypium hirsutum] >TYJ43747.1 hypothe...	[more]

BLAST of Lag0015079 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015079.1	Lag0015079.1	mRNA