Lag0015025 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015025
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionActin cytoskeleton-regulatory complex protein
Locationchr12: 6829216 .. 6829521 (+)
RNA-Seq ExpressionLag0015025
SyntenyLag0015025
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAATCTCCCTAATTTGCTTGATCCTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCAATTGCCACAGACACAGGCCGCCCTCTCTCGCTGGCGCCGGAGCCATCGGAGACCGGCAGCAGAGAAGGGTCGGAAGTGGCGGAGGCGCCGGAGATCCGGCGGATGGGAAAGCACCATGGGGATAAGTCGGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCTATTTTTGCAGCGGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCGTTGA

mRNA sequence

ATGGCCAAAATCTCCCTAATTTGCTTGATCCTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCAATTGCCACAGACACAGGCCGCCCTCTCTCGCTGGCGCCGGAGCCATCGGAGACCGGCAGCAGAGAAGGGTCGGAAGTGGCGGAGGCGCCGGAGATCCGGCGGATGGGAAAGCACCATGGGGATAAGTCGGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCTATTTTTGCAGCGGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCGTTGA

Coding sequence (CDS)

ATGGCCAAAATCTCCCTAATTTGCTTGATCCTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCAATTGCCACAGACACAGGCCGCCCTCTCTCGCTGGCGCCGGAGCCATCGGAGACCGGCAGCAGAGAAGGGTCGGAAGTGGCGGAGGCGCCGGAGATCCGGCGGATGGGAAAGCACCATGGGGATAAGTCGGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCTATTTTTGCAGCGGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCGTTGA

Protein sequence

MAKISLICLILAEILLIQAMASIATDTGRPLSLAPEPSETGSREGSEVAEAPEIRRMGKHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVR
Homology
BLAST of Lag0015025 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 4.5e-35
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0

Query: 1   MAKISLI-CLILAEILLIQAMASIATDTGRPLSLAPEPSETGSREGSEVAEAPEIRRMGK 60
           MAK  L+ CLI+AEILLIQAM SIAT T  PLS APEP+E G+REGS+VAEAPEIRR+GK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101
           HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101

BLAST of Lag0015025 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 7.3e-33
Identity = 82/100 (82.00%), Postives = 89/100 (89.00%), Query Frame = 0

Query: 1   MAKISLICLILAEILLIQAMASIATDTGRPLSLAPEPSETGSREGSEVAEAPEIRRMGKH 60
           MAKISL+CLILA+ILLIQAMAS AT T   +S APEPSET + EG  +AEAPEIRR+GKH
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101
           H DKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDSV
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 100

BLAST of Lag0015025 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 81/100 (81.00%), Postives = 88/100 (88.00%), Query Frame = 0

Query: 1   MAKISLICLILAEILLIQAMASIATDTGRPLSLAPEPSETGSREGSEVAEAPEIRRMGKH 60
           MAKISL+ LILA+ILLIQAMAS AT T   +S APEPSET + EG  +AEAPEIRR+GKH
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSV 101
           H DKSVAGGGVIIGGLVTA+FAAVFCYIRVTRKRDGVDSV
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSV 100

BLAST of Lag0015025 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-26
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MAKISLI-CLILAEILLIQAM-ASIATDTGRPLSLAPEPSETGSREGSEVAEAPEIRRMG 60
          MAKI L+ CLI+ EI LIQA+  SIAT T  PLS+APE SE G+REGSEVAEAPEIRR+G
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIR 90
          KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

BLAST of Lag0015025 vs. NCBI nr
Match: CAN69916.1 (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 1  MAKISLICLILAEILLIQAMA--SIATDTGRPLSLAPEPSETGSREGSEVAEAPEIRRMG 60
          M ++ L+CL+LAEIL++QA+A  S     G  + +A +PS  G  E  EVAEAP  RR+G
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKR 95
          KHH D+S+AGGGVIIGGL TAIFAAVFCYIR+TR+R
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031619.14.5e-3585.15hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070... [more]
KAG6572323.17.3e-3382.00hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011935.11.0e-3181.00hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8645753.18.6e-2679.12hypothetical protein Csa_020263 [Cucumis sativus][more]
CAN69916.12.7e-1960.42hypothetical protein VITISV_044272 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..63
NoneNo IPR availablePANTHERPTHR34558:SF4EXPRESSED PROTEINcoord: 1..99
NoneNo IPR availablePANTHERPTHR34558EXPRESSED PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015025.1Lag0015025.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane