Lag0014982 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014982
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	sigma intracellular receptor 2-like
Location	chr12: 6465624 .. 6467128 (+)
RNA-Seq Expression	Lag0014982
Synteny	Lag0014982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGCTCTTCTCAAGCTCGTCGACGCTCTGCTGTTCCTCGTCTTTCTCCTTCTCGCATTCGCATCGCCTCTAATCGATTTCCAGGCCATATTCCCTCGAACCCTTTTCCCTGATTTTCTCCTCGATCTCAAGAGCTGGTACATCGCCCAATCCGGCGATTACATAATGGCCGATGCTCCTCAGTTCGTCGTTGGCCTCGTTTGGCTTGAGCTTCTCTTTCAATGGCCTCTTATACTTCTCAATCTCTACGCCTTCTTGGCTTCTAAGCCATGGTACAACACCACTTGTATGATCTACGGTGTTTCTCTTGTGGCTTCCATGGTATTTTTCTATTCCTGCGTATTCCAATTTGGTTATTGAATTAGGGATGTTTGTTCTTTGCCTGTTGATCTGATCTGTTGTTTGATTGAACCAATGCGTTTTTGCCTGCATATTCTGTTTATGTTAATTGCTTAATGGCTCTGTTGTTAGTTTTGTAATTGGTACAAAGAATGCCATTTCTTGATGCTTGATGTATTAGTTTTGTGATGTTGGAATCTGGATAGGATAGCAACTTGAAAGAAGTCATAGGTAGTGATTTGAGACAGTTCTGTAAGATCATTTTCAAATTATAAGTTTAGTTCGTGAACTTCTAAGATTGTGTCTATTTAGCTTAGATGGTTTAAAAAGTGTTTATAAGAAATACTTGAACTTTGTGCCTAATAAATCCATGTATTGATTTGTCACATTAATACTTACATGGCATACTAATGGGGTATGTTTGAGAATTACATGGATAGATGATTTTGGACAGGTTTAAGTATTTGACGTGGTTGACGATAAACGGGTGGAGTTAATAGTGAGGACTCCTCAGACAAATTGAAAACTATAGAGTTTATTAGATTCACTTTAAAGTATAGGGATTAAATAGACATTAACTTCAGTGTTGTTTTTCAGCTTTTAAAAACACTTTCAAAGGATGTAATCTTGATTCTTGATATATGTAATTGGTGATGCTGATAGAAGTTATAGTTAGTGAAGTAAGACAAGATAGTCTTAAACTAGCTTGGAAACTGTATTCTTGTCAATAAACTAAGGTTTCAACTTTTAAGCAATCAGGCACTTAGCTTAATAGTGCTAGTTCTTAAACATCTTTTTGAGTACTCTTAGATATTTTTAACGCTTTGATATACTGCCTGAATACATGTTACAAAGGATTTTTCTGCTTCATTTGTTAACCTTCTTGTAGAGATTCACTGGTTTCTGTTTCATTTCTTTTAGAGAAATATTACTTCAACTCAGTCTCTTCTTACATTACATTACATCCTGTGGCCGTGTAATTTCAGTCTGCTATAATGGGTGAAATGGTTGGATCGAACCGGGCGTCTAGTACTCTGTTGACGATATACTGGCCCTTCTTGGGTTTGGGAGTTTTGGCCATGCTACGTGGGCTCGTGCCGTGCTCGAGCAAGGCTACGATCATCGGCACCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGA

mRNA sequence

ATGGGCGCTCTTCTCAAGCTCGTCGACGCTCTGCTGTTCCTCGTCTTTCTCCTTCTCGCATTCGCATCGCCTCTAATCGATTTCCAGGCCATATTCCCTCGAACCCTTTTCCCTGATTTTCTCCTCGATCTCAAGAGCTGGTACATCGCCCAATCCGGCGATTACATAATGGCCGATGCTCCTCAGTTCGTCGTTGGCCTCGTTTGGCTTGAGCTTCTCTTTCAATGGCCTCTTATACTTCTCAATCTCTACGCCTTCTTGGCTTCTAAGCCATGGTACAACACCACTTGTATGATCTACGGTGTTTCTCTTGTGGCTTCCATGTCTGCTATAATGGGTGAAATGGTTGGATCGAACCGGGCGTCTAGTACTCTGTTGACGATATACTGGCCCTTCTTGGGTTTGGGAGTTTTGGCCATGCTACGTGGGCTCGTGCCGTGCTCGAGCAAGGCTACGATCATCGGCACCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGA

Coding sequence (CDS)

ATGGGCGCTCTTCTCAAGCTCGTCGACGCTCTGCTGTTCCTCGTCTTTCTCCTTCTCGCATTCGCATCGCCTCTAATCGATTTCCAGGCCATATTCCCTCGAACCCTTTTCCCTGATTTTCTCCTCGATCTCAAGAGCTGGTACATCGCCCAATCCGGCGATTACATAATGGCCGATGCTCCTCAGTTCGTCGTTGGCCTCGTTTGGCTTGAGCTTCTCTTTCAATGGCCTCTTATACTTCTCAATCTCTACGCCTTCTTGGCTTCTAAGCCATGGTACAACACCACTTGTATGATCTACGGTGTTTCTCTTGTGGCTTCCATGTCTGCTATAATGGGTGAAATGGTTGGATCGAACCGGGCGTCTAGTACTCTGTTGACGATATACTGGCCCTTCTTGGGTTTGGGAGTTTTGGCCATGCTACGTGGGCTCGTGCCGTGCTCGAGCAAGGCTACGATCATCGGCACCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGA

Protein sequence

MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADAPQFVVGLVWLELLFQWPLILLNLYAFLASKPWYNTTCMIYGVSLVASMSAIMGEMVGSNRASSTLLTIYWPFLGLGVLAMLRGLVPCSSKATIIGTRPSNGRKKRA

Homology

[Close]

BLAST of Lag0014982 vs. NCBI nr
Match: XP_022952624.1 (sigma intracellular receptor 2-like [Cucurbita moschata])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 146/166 (87.95%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADA 60
           MGALLKLVDALLFL FLLLA  SPLIDFQ IFPRTLFP FL+DLK+WYI QSGDYIMAD+
Sbjct: 1   MGALLKLVDALLFLAFLLLALVSPLIDFQVIFPRTLFPHFLIDLKTWYIRQSGDYIMADS 60

Query: 61  PQFVVGLVWLELLFQWPLILLNLYAFLASKPWYNTTCMIYGVSLVASMSAIMGEMVGSNR 120
           P FVVGLVWLELLFQWPL+LLNLYAFLA+K WYNTTC+IYGVSLVASMSAI+GEMVGSNR
Sbjct: 61  PHFVVGLVWLELLFQWPLLLLNLYAFLAAKTWYNTTCLIYGVSLVASMSAILGEMVGSNR 120

Query: 121 ASSTLLTIYWPFLGLGVLAMLRGLVPCSSKATIIGTRPSNGRKKRA 167
           AS+TL+TIY+PFLGLGVLAMLRGLV CSSKATI GTRPSNGRKKRA
Sbjct: 121 ASNTLMTIYYPFLGLGVLAMLRGLVACSSKATITGTRPSNGRKKRA 166

[Close]

BLAST of Lag0014982 vs. NCBI nr
Match: XP_022969277.1 (sigma intracellular receptor 2-like [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 3.1e-73
Identity = 145/166 (87.35%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADA 60
           MGALLKLVDALLFL FLLLA  SPLIDFQ IFP+TLFP FL+DLK+WYI QSGDYIMAD+
Sbjct: 1   MGALLKLVDALLFLAFLLLALVSPLIDFQVIFPQTLFPHFLIDLKTWYIRQSGDYIMADS 60

Query: 61  PQFVVGLVWLELLFQWPLILLNLYAFLASKPWYNTTCMIYGVSLVASMSAIMGEMVGSNR 120
           P FVV LVWLELLFQWPL+LLNLYAFLA+KPWYNTTC+IYGVSLVASMSAI+GEMVGSNR
Sbjct: 61  PHFVVALVWLELLFQWPLLLLNLYAFLAAKPWYNTTCLIYGVSLVASMSAILGEMVGSNR 120

Query: 121 ASSTLLTIYWPFLGLGVLAMLRGLVPCSSKATIIGTRPSNGRKKRA 167
           AS+TL+TIY+PFLGLGVLAMLRGLV CSSKATI GTRPSNGRKKRA
Sbjct: 121 ASNTLMTIYYPFLGLGVLAMLRGLVACSSKATITGTRPSNGRKKRA 166

[Close]

BLAST of Lag0014982 vs. NCBI nr
Match: KAG7011913.1 (Transmembrane protein 97, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 144/166 (86.75%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADA 60
           MGALLKLVDALLFL FLLLA  SPLIDFQ IFPRTLFP FL+DLK+WYI QSGDYIMAD+
Sbjct: 1   MGALLKLVDALLFLAFLLLALVSPLIDFQVIFPRTLFPHFLIDLKTWYIRQSGDYIMADS 60

Query: 61  PQFVVGLVWLELLFQWPLILLNLYAFLASKPWYNTTCMIYGVSLVASMSAIMGEMVGSNR 120
           P FVVGLVWLELLFQWPL+LLNLYA LA+K WYNTTC+IYGVSLVASMSAI+GEMVGSNR
Sbjct: 61  PHFVVGLVWLELLFQWPLLLLNLYALLAAKTWYNTTCLIYGVSLVASMSAILGEMVGSNR 120

Query: 121 ASSTLLTIYWPFLGLGVLAMLRGLVPCSSKATIIGTRPSNGRKKRA 167
           AS+TL+TIY+PFLGLGVLAMLRGLV CSSKATI GT+PSNGRKKRA
Sbjct: 121 ASNTLMTIYYPFLGLGVLAMLRGLVACSSKATITGTKPSNGRKKRA 166

[Close]

BLAST of Lag0014982 vs. NCBI nr
Match: XP_038887415.1 (sigma intracellular receptor 2 [Benincasa hispida])

HSP 1 Score: 281.2 bits (718), Expect = 5.9e-72
Identity = 144/166 (86.75%), Postives = 157/166 (94.58%), Query Frame = 0


Query: 1   MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADA 60
           MGALLKLVDALLFLVFLLLAF SPLIDFQ IFP+TLFPDFL+DLK+ YI Q GDY+MA++
Sbjct: 1   MGALLKLVDALLFLVFLLLAFISPLIDFQLIFPQTLFPDFLIDLKASYIHQYGDYLMAES 60

Query: 61  PQFVVGLVWLELLFQWPLILLNLYAFLASKPWYNTTCMIYGVSLVASMSAIMGEMVGSNR 120
           P FVVGLVWLELLFQWPL+LLNLYAFLASKPWYNTTC+IYGVS+VASMSAI+GEMVGSNR
Sbjct: 61  PPFVVGLVWLELLFQWPLMLLNLYAFLASKPWYNTTCLIYGVSVVASMSAILGEMVGSNR 120

Query: 121 ASSTLLTIYWPFLGLGVLAMLRGLVPCSSKATIIGTRPSNGRKKRA 167
           AS+TLLTIY+PFLG GVLAMLRGLV CSSKAT+ GTRPSNGRKKRA
Sbjct: 121 ASTTLLTIYYPFLGFGVLAMLRGLVSCSSKATVTGTRPSNGRKKRA 166

[Close]

BLAST of Lag0014982 vs. NCBI nr
Match: KAG6572300.1 (Sigma intracellular receptor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.2 bits (718), Expect = 5.9e-72
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADA 60
           MGALLKLVDALLFL FLLLA  SPLIDFQ IFPRTLFP FL+DLK+WYI QSGDYIMAD+
Sbjct: 1   MGALLKLVDALLFLAFLLLALVSPLIDFQVIFPRTLFPHFLIDLKTWYIRQSGDYIMADS 60

Query: 61  PQFVVGLVWLELLFQWPLILLNLYAFLASKPWYNTTCMIYGVSLVASMSAIMGEMVGSNR 120
           P FVVGLVWLELLFQWPL+LLNLYA LA+K WYNTTC+IYGVSLVASMSAI+GEMVGSN+
Sbjct: 61  PHFVVGLVWLELLFQWPLLLLNLYALLAAKTWYNTTCLIYGVSLVASMSAILGEMVGSNQ 120

Query: 121 ASSTLLTIYWPFLGLGVLAMLRGLVPCSSKATIIGTRPSNGRKKRA 167
           AS+TL+TIY+PFLGLGVLAMLRGLV CSSKATI GT+PSNGRKKRA
Sbjct: 121 ASNTLMTIYYPFLGLGVLAMLRGLVACSSKATITGTKPSNGRKKRA 166

[Close]

BLAST of Lag0014982 vs. ExPASy Swiss-Prot
Match: Q6DFQ5 (Sigma intracellular receptor 2 OS=Xenopus tropicalis OX=8364 GN=tmem97 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 43/154 (27.92%), Postives = 72/154 (46.75%), Query Frame = 0


Query: 1   MGALLKLVDALLFLVFLLLAFASPLIDFQAIFPRTLFPDFLLDLKSWYIAQSGDYIMADA 60
           M    +L++ + F  F      + L+D QA+ P +L+P  LLDL  WY     D++MA+ 
Sbjct: 1   MAVCARLLEWIFFFYFFSHIPITLLVDLQAVLPPSLYPQELLDLMKWYTVAFKDHLMANP 60

Query: 61  PQFVVGLVWLELLFQWPLILLNLYAFL-ASKPWYNTTCMIYGVSLVASMSAIMGEMVGSN 120
           P +    V+ E + Q P   +  YAF      W     ++Y   +  ++ AI+G ++   
Sbjct: 61  PPWFKSFVYCEAILQLPFFPVAAYAFFKGGCKWIRIPAIVYSAHVATTVIAIIGHILFGE 120

Query: 121 RASS------------TLLTIYWPFLGLGVLAML 142
              S            TL++IY P+L + VL +L
Sbjct: 121 FPKSDVIAPLTQKDRLTLVSIYAPYLLVPVLLLL 154

The following BLAST results are available for this feature:

BLAST of Lag0014982 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952624.1	1.8e-73	87.95	sigma intracellular receptor 2-like [Cucurbita moschata]	[more]
XP_022969277.1	3.1e-73	87.35	sigma intracellular receptor 2-like [Cucurbita maxima]	[more]
KAG7011913.1	2.0e-72	86.75	Transmembrane protein 97, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038887415.1	5.9e-72	86.75	sigma intracellular receptor 2 [Benincasa hispida]	[more]
KAG6572300.1	5.9e-72	86.14	Sigma intracellular receptor 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0014982 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DFQ5	4.7e-08	27.92	Sigma intracellular receptor 2 OS=Xenopus tropicalis OX=8364 GN=tmem97 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016964	Sigma intracellular receptor 2	PIRSF	PIRSF031032	TMP_97	coord: 1..156 e-value: 3.6E-29 score: 99.5
None	No IPR available	PFAM	PF05241	EBP	coord: 40..139 e-value: 6.5E-15 score: 55.5
None	No IPR available	PANTHER	PTHR31204:SF6	SUBFAMILY NOT NAMED	coord: 1..166
None	No IPR available	PANTHER	PTHR31204	SIGMA INTRACELLULAR RECEPTOR 2	coord: 1..166
IPR033118	EXPERA domain	PROSITE	PS51751	EXPERA	coord: 8..140 score: 15.841209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014982.1	Lag0014982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane