Lag0014920 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014920
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr12: 5900832 .. 5903413 (-)
RNA-Seq Expression	Lag0014920
Synteny	Lag0014920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCTGAGTTCTTCAAATACGGCGGTGGATGATTCCTCTGCTTCTTTATCCTCTCAGATCTTCGGTCCGGGTAACAAAATTTCAGTTGTTAAATTAACTGATGAAAATTTTCTCTTATGGAAGTTTCAGATCCTTATGGCTCTCGAGGGCTATGATTTGGAACATCACCTTGTCGATGATTCTCCTCCTCAATTTCTTACATCTACTGCTCAGTCTTCCTCCGTGGAGGGGGCGTCTGTAACGAAAACACTGAACCCAGCCTACACTATCTGGAAACGTCAAGACAAAGTCATCTCGTCATGGCTGGTGGGTTCAATGTCGGAGGACATTCTTCACCAAATGATACATTGCACCTCAACGAAGGAAATTTGGACCTGTCTACAACAAATTTTTACCTCCCGTAACCTAGCTCAGGTAATGAAGGTTAAAACGAAACTCCAAACGCTGCAAAAGGGAGGTATGTCTCTTAAGGATTACTTTTCAAAAATACAGCACTATGTTGATGCATTGGCCGCTGTCGGTAAGCCTGTCGAAACTGAGGATCACATATTATACATTCTGTCCGGTCTTGGATCTGATTTTGAGTCGATGGTCTCTGTGATATCAGCTAAAATGGGTCCCCAATCTGTTCACGAAGTTATGGCTCTTTTATTAACTCAAGAAAATCGAAATGAGAGTAAAATAGCTACTCCGGATGGCTCTCTTCCCTCTGCTAACATTGTAGTTAATTCTAAATCGATTGAGTCTAAGTCCACCAAAACTAACAATGCTCAGTCTTCTCAGAATTTTTCTCCTGGAAACAGAGGAAGCAGAGGTGGGGGTCGTTCTGGTCGAGGGGGCCGATCTGGTTCTTGGAACAATCGCAACAAGGTTCAGTGTCAACTGTGCACAAAATTTGGGCACACTGCTTCCCATTGCTTCTTCCGCTATGCTCCTTCCAACTCAGGAAACACAGGTCCGTTTCAGTCTAATTTTAATCAATTTAATCAACTTCTCCACCACTCGACTACAAACATATACATATGTATGTATATTAATTACTTAATTCTGATTCCTTTTCTTATATCATGAATTAGATGTACACAAATTAAATTAGATCAACCATCAAAATGTTGAAGAAATTAAAGTACCTTGGACGGCGCCCTGGTGGGCTCTGAGAAGGCGCGACGGAGAAGATTCGGGATCAAGGAAGGTAACGGAGTAACGATAGTATTAGTTTTAAGATGGCAACGATAGGAATACGATACAGATCTGCGAGATGACGAGCACATCCAACGGAGTAACGACGCCGCCATTTTCTTCTGCCGATTCTCAACTCACTCCAACCCTTTGTTATTTGAGGAATTTGACAGTTTTGACCCCATCATGTTTTTTGTTTGTAAATTTAACCCCCTCAGTTTTTATTTAGTTTTTTAGGTTATTTTAATTTTTATTTAGATGTGAAATTACGAAAATGCCCCTCTCAGAATTTAAAACTTCATCTTCTCCCTCGTTTCCCTCTCGTTCTCTCCTATTTTCAACCACTCGTCTTCTCCCTCGTTCCAGCTTCCATTTTGATCGATTTCTTGCGTGTATTTGGTGTAAAAACAACTTAGGAGAACGATTTCTAGCTGTAAGGTATGTTTTTTTCGTTTTATTTTACTGTTTTCTAGGGTTTAGAAACATTTTATGTAGTCTAGGATCGTTTGCCCAAATTTCTTGTAGTTTAGCATGAGTTTATTGTTCAAAACGTGTTTTCGGCGCTTTCTGAATGTGTTGTGATGTAAAATGGGGCTGGATTTTGTACGGGTTGGCTGGGTTTTTGAGTTGCAGGCGAAGAATCTCGACCGGGATGCATATGGGGGCACCGGGAAAATGGGCCAGGAATGGATATTTTGAATCCCAAAACCGCGACCTCGGCCGGAAGCCACGAGAGTTCGGGCGGGCGACCCGAACGAGACGGACCGAACCGGACCAAGATCCAATTTTTTTTTTTTGAAATTTTGATTTTTTTAATATTTTTTTTGTACTTTTTTTATTTACTCAGGCATTTTGTTGTTGAACTTATAATTTTGTACCGTGAATACTTCATAAAAAAAATTTCTTTTTATTTTTTTGAAATTAGGTTTTGTTTGTCAATAGGATTTACCATCATGGCATTGGTACCAAAGATTGCACCCGCTGACTACTTTCCTGCTGCTTTGACATGTTGTTCACATCTCGGAAAAACCGTTAAAAATATTAAGGATAAATTAACTGATACCCAGTTAGAAATGTTTAGGCAAACATGTTTTGGACATTTCTTAGATACGTCCTTGATGTTTAATGGACAACTTATTCATTATTTTCTTTTGAGGGAAGTGAATGAGCCTAGGATTGATGTTATTAGCTTTGAGATTCTGGGAGAGAAAGTTTCATTTGGTCGGAGGGAATTTAACCTTATTACTGGAATTAGGCATAGGACCCAACATGTTAGGGGTAATGTATCTAGTACTAGACTGAGAAGACTGTACCTTAACGATAGCATCAGCATGAAAGGGTTTGAACTAGATAGATTATTCCTACCATTAATTTTGAGAGCGATGAGGATGCTGTGA

mRNA sequence

ATGGCGTCTCTGAGTTCTTCAAATACGGCGGTGGATGATTCCTCTGCTTCTTTATCCTCTCAGATCTTCGGTCCGGGTAACAAAATTTCAGTTGTTAAATTAACTGATGAAAATTTTCTCTTATGGAAGTTTCAGATCCTTATGGCTCTCGAGGGCTATGATTTGGAACATCACCTTGTCGATGATTCTCCTCCTCAATTTCTTACATCTACTGCTCAGTCTTCCTCCGTGGAGGGGGCGTCTGTAACGAAAACACTGAACCCAGCCTACACTATCTGGAAACGTCAAGACAAAGTCATCTCGTCATGGCTGGTGGGTTCAATGTCGGAGGACATTCTTCACCAAATGATACATTGCACCTCAACGAAGGAAATTTGGACCTGTCTACAACAAATTTTTACCTCCCGTAACCTAGCTCAGGTAATGAAGGTTAAAACGAAACTCCAAACGCTGCAAAAGGGAGGTATGTCTCTTAAGGATTACTTTTCAAAAATACAGCACTATGTTGATGCATTGGCCGCTGTCGGTAAGCCTGTCGAAACTGAGGATCACATATTATACATTCTGTCCGGTCTTGGATCTGATTTTGAGTCGATGGTCTCTGTGATATCAGCTAAAATGGGTCCCCAATCTGTTCACGAAGTTATGGCTCTTTTATTAACTCAAGAAAATCGAAATGAGAGTAAAATAGCTACTCCGGATGGCTCTCTTCCCTCTGCTAACATTGTAGTTAATTCTAAATCGATTGAGTCTAAGTCCACCAAAACTAACAATGCTCAGTCTTCTCAGAATTTTTCTCCTGGAAACAGAGGAAGCAGAGGTGGGGGTCGTTCTGGTCGAGGGGGCCGATCTGGTTCTTGGAACAATCGCAACAAGGTTCAGTGTCAACTGTGCACAAAATTTGGGCACACTGCTTCCCATTGCTTCTTCCGCTATGCTCCTTCCAACTCAGGAAACACAGGCGAAGAATCTCGACCGGGATGCATATGGGGGCACCGGGAAAATGGGCCAGGAATGGATATTTTGAATCCCAAAACCGCGACCTCGGCCGGAAGCCACGAGAGATTTACCATCATGGCATTGGTACCAAAGATTGCACCCGCTGACTACTTTCCTGCTGCTTTGACATGTTGTTCACATCTCGGAAAAACCGTTAAAAATATTAAGGATAAATTAACTGATACCCAGTTAGAAATGTTTAGGCAAACATGTTTTGGACATTTCTTAGATACGTCCTTGATGTTTAATGGACAACTTATTCATTATTTTCTTTTGAGGGAAGTGAATGAGCCTAGGATTGATGTTATTAGCTTTGAGATTCTGGGAGAGAAAGTTTCATTTGGTCGGAGGGAATTTAACCTTATTACTGGAATTAGGCATAGGACCCAACATGTTAGGGGTAATGTATCTAGTACTAGACTGAGAAGACTGTACCTTAACGATAGCATCAGCATGAAAGGGTTTGAACTAGATAGATTATTCCTACCATTAATTTTGAGAGCGATGAGGATGCTGTGA

Coding sequence (CDS)

ATGGCGTCTCTGAGTTCTTCAAATACGGCGGTGGATGATTCCTCTGCTTCTTTATCCTCTCAGATCTTCGGTCCGGGTAACAAAATTTCAGTTGTTAAATTAACTGATGAAAATTTTCTCTTATGGAAGTTTCAGATCCTTATGGCTCTCGAGGGCTATGATTTGGAACATCACCTTGTCGATGATTCTCCTCCTCAATTTCTTACATCTACTGCTCAGTCTTCCTCCGTGGAGGGGGCGTCTGTAACGAAAACACTGAACCCAGCCTACACTATCTGGAAACGTCAAGACAAAGTCATCTCGTCATGGCTGGTGGGTTCAATGTCGGAGGACATTCTTCACCAAATGATACATTGCACCTCAACGAAGGAAATTTGGACCTGTCTACAACAAATTTTTACCTCCCGTAACCTAGCTCAGGTAATGAAGGTTAAAACGAAACTCCAAACGCTGCAAAAGGGAGGTATGTCTCTTAAGGATTACTTTTCAAAAATACAGCACTATGTTGATGCATTGGCCGCTGTCGGTAAGCCTGTCGAAACTGAGGATCACATATTATACATTCTGTCCGGTCTTGGATCTGATTTTGAGTCGATGGTCTCTGTGATATCAGCTAAAATGGGTCCCCAATCTGTTCACGAAGTTATGGCTCTTTTATTAACTCAAGAAAATCGAAATGAGAGTAAAATAGCTACTCCGGATGGCTCTCTTCCCTCTGCTAACATTGTAGTTAATTCTAAATCGATTGAGTCTAAGTCCACCAAAACTAACAATGCTCAGTCTTCTCAGAATTTTTCTCCTGGAAACAGAGGAAGCAGAGGTGGGGGTCGTTCTGGTCGAGGGGGCCGATCTGGTTCTTGGAACAATCGCAACAAGGTTCAGTGTCAACTGTGCACAAAATTTGGGCACACTGCTTCCCATTGCTTCTTCCGCTATGCTCCTTCCAACTCAGGAAACACAGGCGAAGAATCTCGACCGGGATGCATATGGGGGCACCGGGAAAATGGGCCAGGAATGGATATTTTGAATCCCAAAACCGCGACCTCGGCCGGAAGCCACGAGAGATTTACCATCATGGCATTGGTACCAAAGATTGCACCCGCTGACTACTTTCCTGCTGCTTTGACATGTTGTTCACATCTCGGAAAAACCGTTAAAAATATTAAGGATAAATTAACTGATACCCAGTTAGAAATGTTTAGGCAAACATGTTTTGGACATTTCTTAGATACGTCCTTGATGTTTAATGGACAACTTATTCATTATTTTCTTTTGAGGGAAGTGAATGAGCCTAGGATTGATGTTATTAGCTTTGAGATTCTGGGAGAGAAAGTTTCATTTGGTCGGAGGGAATTTAACCTTATTACTGGAATTAGGCATAGGACCCAACATGTTAGGGGTAATGTATCTAGTACTAGACTGAGAAGACTGTACCTTAACGATAGCATCAGCATGAAAGGGTTTGAACTAGATAGATTATTCCTACCATTAATTTTGAGAGCGATGAGGATGCTGTGA

Protein sequence

MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLVDDSPPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIHCTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLPSANIVVNSKSIESKSTKTNNAQSSQNFSPGNRGSRGGGRSGRGGRSGSWNNRNKVQCQLCTKFGHTASHCFFRYAPSNSGNTGEESRPGCIWGHRENGPGMDILNPKTATSAGSHERFTIMALVPKIAPADYFPAALTCCSHLGKTVKNIKDKLTDTQLEMFRQTCFGHFLDTSLMFNGQLIHYFLLREVNEPRIDVISFEILGEKVSFGRREFNLITGIRHRTQHVRGNVSSTRLRRLYLNDSISMKGFELDRLFLPLILRAMRML

Homology

[Close]

BLAST of Lag0014920 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 1.2e-80
Identity = 181/345 (52.46%), Postives = 234/345 (67.83%), Query Frame = 0


Query: 1   MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLV 60
           M+S SS     +  ++S  +QIFG GNKIS+VKL D+ FLLWKFQIL ALE YDLE+ L 
Sbjct: 1   MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60

Query: 61  DDS--PPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIH 120
            +S  P ++L ST  SS    AS T T NPAY +WKRQD++ISSWL+GSMSE+IL+QM+H
Sbjct: 61  SESEPPSKYLISTESSS----ASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 120

Query: 121 CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKP 180
           C S KEIW  LQ IF+SR LAQ M+ K KL  ++KG M LK+YF KI   VDALA++ KP
Sbjct: 121 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 180

Query: 181 VETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLP 240
           V ++DHILYIL+GLGSD++SM+SVISA+    SV EVM+LLLTQE++NESK+ + + +LP
Sbjct: 181 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ETALP 240

Query: 241 SANIVVNSKSIESKS-TKTNNAQSSQNFSPGNRGSRGGGRSGRGGRSGSWNNRNKVQCQL 300
           S NIV  +    ++S  +TN      N S   RG RG GRS RG R     NRNK QCQ+
Sbjct: 241 SVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRR----GNRNKPQCQI 300

Query: 301 CTKFGHTASHCFFRYAPSNSGNTGEESRPGCIWGHRENGPGMDIL 343
           C K G++A  CFFRY P ++ +    +     + +  N P M  +
Sbjct: 301 CAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQMSAM 336

[Close]

BLAST of Lag0014920 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 1.2e-80
Identity = 181/345 (52.46%), Postives = 234/345 (67.83%), Query Frame = 0


Query: 1   MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLV 60
           M+S SS     +  ++S  +QIFG GNKIS+VKL D+ FLLWKFQIL ALE YDLE+ L 
Sbjct: 1   MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60

Query: 61  DDS--PPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIH 120
            +S  P ++L ST  SS    AS T T NPAY +WKRQD++ISSWL+GSMSE+IL+QM+H
Sbjct: 61  SESEPPSKYLISTESSS----ASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 120

Query: 121 CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKP 180
           C S KEIW  LQ IF+SR LAQ M+ K KL  ++KG M LK+YF KI   VDALA++ KP
Sbjct: 121 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 180

Query: 181 VETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLP 240
           V ++DHILYIL+GLGSD++SM+SVISA+    SV EVM+LLLTQE++NESK+ + + +LP
Sbjct: 181 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ETALP 240

Query: 241 SANIVVNSKSIESKS-TKTNNAQSSQNFSPGNRGSRGGGRSGRGGRSGSWNNRNKVQCQL 300
           S NIV  +    ++S  +TN      N S   RG RG GRS RG R     NRNK QCQ+
Sbjct: 241 SVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRR----GNRNKPQCQI 300

Query: 301 CTKFGHTASHCFFRYAPSNSGNTGEESRPGCIWGHRENGPGMDIL 343
           C K G++A  CFFRY P ++ +    +     + +  N P M  +
Sbjct: 301 CAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQMSAM 336

[Close]

BLAST of Lag0014920 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 270.0 bits (689), Expect = 4.1e-68
Identity = 151/316 (47.78%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHL- 60
           MASLSS   + D +    +S+   PG+K+S+V+L D+N LLWKFQI  AL+G  LE ++ 
Sbjct: 1   MASLSSIRNS-DAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYID 60

Query: 61  -VDDSPPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIH 120
             +D+P QF+ +T   SS    S +   NPAY  W +QDK+IS+WL+GSM+EDIL QM+ 
Sbjct: 61  SNEDTPAQFVQTTEDESS----SSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLD 120

Query: 121 CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKP 180
           C S +EIWT L+ +F SR LA+VM++K KL+  +KG +SLKDYF KI++ VD+LA  GK 
Sbjct: 121 CKSAREIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKK 180

Query: 181 VETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLP 240
           + TEDHI++IL+GLG +F++++SVI+A+  PQ++ EV +LLL QE RNE  +   DGSLP
Sbjct: 181 LSTEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNERNLINSDGSLP 240

Query: 241 SANIVVNSKSIESKSTKTNNAQSSQNFSP--GNRGSRGGGRSGRGGRSGSWNNRNKVQCQ 300
           S N+ +N       S+K NN   S+ F+P   N   RG G + R     +W   NK QCQ
Sbjct: 241 SVNLTLND------SSKKNNLHQSKCFNPHQSNYSQRGRGTNNRSSNRRNWTGNNKPQCQ 300

Query: 301 LCTKFGHTASHCFFRY 313
           +C +FGHTA  C+ R+
Sbjct: 301 ICGRFGHTALRCYMRF 305

[Close]

BLAST of Lag0014920 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 8.9e-63
Identity = 142/267 (53.18%), Postives = 189/267 (70.79%), Query Frame = 0


Query: 3   SLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLVD- 62
           S +SS   V+++  S    IFG GNKIS+VKL+D+NFLLWKFQIL ALE YDLE+     
Sbjct: 2   SSNSSPLGVENTEVS----IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESE 61

Query: 63  -DSPPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIHCT 122
            + P ++LTST  SS+    S T+T NP Y +WKR +++IS WL+GSMSE+IL+QM+HC 
Sbjct: 62  LEPPSKYLTSTGSSST----SATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCK 121

Query: 123 STKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKPVE 182
           S KEIW  LQ IF+SR LAQ M+ K KL  ++KG MSLK+YF KIQ  VDALA++ KPV 
Sbjct: 122 SAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVS 181

Query: 183 TEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLPSA 242
           ++DHILYIL GLG D++SM+S+ISA+    S+ EVM+LLLTQE++NESK+ + + +LP  
Sbjct: 182 SDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLIS-ETALPYV 241

Query: 243 NIVVNS--KSIESKSTKTNNAQSSQNF 266
            IV  +  K  ES    + N   + +F
Sbjct: 242 KIVTQTTEKGAESYIRNSQNNYHNSHF 259

[Close]

BLAST of Lag0014920 vs. NCBI nr
Match: KAA0046195.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 2.0e-59
Identity = 139/285 (48.77%), Postives = 189/285 (66.32%), Query Frame = 0


Query: 46  ILMALEGYDLEHHLVDDSPP--QFLTSTAQSSSV----EGASVTKTLNPAYTIWKRQDKV 105
           IL ALE Y LE +    + P  +++      SSV      A     LN  Y +WKRQD++
Sbjct: 14  ILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRL 73

Query: 106 ISSWLVGSMSEDILHQMIHCTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLK 165
           ISSWL+GSMSEDIL+QM+H TS K+IW  LQ I++SR LA+ M+ K KL  ++KG MSLK
Sbjct: 74  ISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLK 133

Query: 166 DYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALL 225
           +YF KIQ  VDALA++ KP+ T+DHILYIL+GLG++++S++S+ISA+    SV + M+LL
Sbjct: 134 EYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLL 193

Query: 226 LTQENRNESKIATPDGSLPSANIVVNSKSIES--KSTKTNNAQSSQNF------SPGNRG 285
           LTQE++ ESKI T + SLP+ N+  +++ I S  K ++  +   S N       S  +  
Sbjct: 194 LTQESQIESKI-TSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHK 253

Query: 286 SRGGGRSGRGGRSGSWNNRNKVQCQLCTKFGHTASHCFFRYAPSN 317
           SR GGRS RGGR     NR+K QCQ+C+KFGH A  C+FRY P N
Sbjct: 254 SRAGGRSNRGGR----GNRHKTQCQICSKFGHVADRCYFRYTPRN 293

[Close]

BLAST of Lag0014920 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-24
Identity = 86/314 (27.39%), Postives = 149/314 (47.45%), Query Frame = 0


Query: 27  NKISVVKLTDENFLLWKFQILMALEGYDLEHHLVDDSPPQFLTSTAQSSSVEGASVTKTL 86
           N  +V KLT  N+L+W  Q+    +GY+L   L          ST    +  G      +
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDG--------STTMPPATIGTDAAPRV 78

Query: 87  NPAYTIWKRQDKVISSWLVGSMSEDILHQMIHCTSTKEIWTCLQQIFTSRNLAQVMKVKT 146
           NP YT WKRQDK+I S ++G++S  +   +   T+  +IW  L++I+ + +   V +++T
Sbjct: 79  NPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRT 138

Query: 147 KLQTLQKGGMSLKDYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAK 206
           +L+   KG  ++ DY   +    D LA +GKP++ ++ +  +L  L  +++ ++  I+AK
Sbjct: 139 QLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAK 198

Query: 207 MGPQSVHEVMALLLTQENRNESKIATPDGSLPSANIVVNSKSIESKSTKTNNAQSSQNFS 266
             P ++ E+   LL     +ESKI     S     I  N+ S  + +T  NN   ++N  
Sbjct: 199 DTPPTLTEIHERLL----NHESKILAV-SSATVIPITANAVSHRNTTTTNNNNNGNRNNR 258

Query: 267 PGNRGSRGGGRSGRGGRSGSWNNRNKV-----QCQLCTKFGHTASHCFFRYAPSNSGNTG 326
             NR +    +  +   +    N N+      +CQ+C   GH+A  C       +S N+ 
Sbjct: 259 YDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQ 318

Query: 327 EESRPGCIWGHREN 336
           +   P   W  R N
Sbjct: 319 QPPSPFTPWQPRAN 319

[Close]

BLAST of Lag0014920 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.2e-19
Identity = 83/315 (26.35%), Postives = 151/315 (47.94%), Query Frame = 0


Query: 27  NKISVVKLTDENFLLWKFQILMALEGYDLEHHLVDDSPPQFLTSTAQSSSVEGASVTKTL 86
           N  +V KLT  N+L+W  Q+    +GY+L   L          ST    +  G      +
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDG--------STPMPPATIGTDAVPRV 78

Query: 87  NPAYTIWKRQDKVISSWLVGSMSEDILHQMIHCTSTKEIWTCLQQIFTSRNLAQVMKVKT 146
           NP YT W+RQDK+I S ++G++S  +   +   T+  +IW  L++I+ + +   V    T
Sbjct: 79  NPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHV----T 138

Query: 147 KLQTLQKGGMSLKDYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAK 206
           +L+ + +                D LA +GKP++ ++ +  +L  L  D++ ++  I+AK
Sbjct: 139 QLRFITR---------------FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAK 198

Query: 207 MGPQSVHEVMALLLTQENRNESKIATPDGSLPSANIV-VNSKSIESKSTKTNNAQS---- 266
             P S+ E+   L+ +    ESK+     +L SA +V + +  +  ++T TN  Q+    
Sbjct: 199 DTPPSLTEIHERLINR----ESKLL----ALNSAEVVPITANVVTHRNTNTNRNQNNRGD 258

Query: 267 SQNFSPGNRGSRGGGRSGRGGRSGSWNNRNKV-QCQLCTKFGHTASHCFFRYAPSNSGNT 326
           ++N++  N  S     S  G RS +   +  + +CQ+C+  GH+A  C   +   ++ N 
Sbjct: 259 NRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQ 298

Query: 327 GEESRPGCIWGHREN 336
            + + P   W  R N
Sbjct: 319 QQSTSPFTPWQPRAN 298

[Close]

BLAST of Lag0014920 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 6.0e-81
Identity = 181/345 (52.46%), Postives = 234/345 (67.83%), Query Frame = 0


Query: 1   MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLV 60
           M+S SS     +  ++S  +QIFG GNKIS+VKL D+ FLLWKFQIL ALE YDLE+ L 
Sbjct: 1   MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60

Query: 61  DDS--PPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIH 120
            +S  P ++L ST  SS    AS T T NPAY +WKRQD++ISSWL+GSMSE+IL+QM+H
Sbjct: 61  SESEPPSKYLISTESSS----ASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 120

Query: 121 CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKP 180
           C S KEIW  LQ IF+SR LAQ M+ K KL  ++KG M LK+YF KI   VDALA++ KP
Sbjct: 121 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 180

Query: 181 VETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLP 240
           V ++DHILYIL+GLGSD++SM+SVISA+    SV EVM+LLLTQE++NESK+ + + +LP
Sbjct: 181 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ETALP 240

Query: 241 SANIVVNSKSIESKS-TKTNNAQSSQNFSPGNRGSRGGGRSGRGGRSGSWNNRNKVQCQL 300
           S NIV  +    ++S  +TN      N S   RG RG GRS RG R     NRNK QCQ+
Sbjct: 241 SVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRR----GNRNKPQCQI 300

Query: 301 CTKFGHTASHCFFRYAPSNSGNTGEESRPGCIWGHRENGPGMDIL 343
           C K G++A  CFFRY P ++ +    +     + +  N P M  +
Sbjct: 301 CAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQMSAM 336

[Close]

BLAST of Lag0014920 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 6.0e-81
Identity = 181/345 (52.46%), Postives = 234/345 (67.83%), Query Frame = 0


Query: 1   MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLV 60
           M+S SS     +  ++S  +QIFG GNKIS+VKL D+ FLLWKFQIL ALE YDLE+ L 
Sbjct: 1   MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60

Query: 61  DDS--PPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIH 120
            +S  P ++L ST  SS    AS T T NPAY +WKRQD++ISSWL+GSMSE+IL+QM+H
Sbjct: 61  SESEPPSKYLISTESSS----ASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLH 120

Query: 121 CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKP 180
           C S KEIW  LQ IF+SR LAQ M+ K KL  ++KG M LK+YF KI   VDALA++ KP
Sbjct: 121 CKSAKEIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKP 180

Query: 181 VETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLP 240
           V ++DHILYIL+GLGSD++SM+SVISA+    SV EVM+LLLTQE++NESK+ + + +LP
Sbjct: 181 VSSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKLIS-ETALP 240

Query: 241 SANIVVNSKSIESKS-TKTNNAQSSQNFSPGNRGSRGGGRSGRGGRSGSWNNRNKVQCQL 300
           S NIV  +    ++S  +TN      N S   RG RG GRS RG R     NRNK QCQ+
Sbjct: 241 SVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRR----GNRNKPQCQI 300

Query: 301 CTKFGHTASHCFFRYAPSNSGNTGEESRPGCIWGHRENGPGMDIL 343
           C K G++A  CFFRY P ++ +    +     + +  N P M  +
Sbjct: 301 CAKLGYSADRCFFRYTPRSNSSGYSPNSHNTSYTNMNNHPQMSAM 336

[Close]

BLAST of Lag0014920 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-68
Identity = 151/316 (47.78%), Postives = 212/316 (67.09%), Query Frame = 0


Query: 1   MASLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHL- 60
           MASLSS   + D +    +S+   PG+K+S+V+L D+N LLWKFQI  AL+G  LE ++ 
Sbjct: 1   MASLSSIRNS-DAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYID 60

Query: 61  -VDDSPPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIH 120
             +D+P QF+ +T   SS    S +   NPAY  W +QDK+IS+WL+GSM+EDIL QM+ 
Sbjct: 61  SNEDTPAQFVQTTEDESS----SSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLD 120

Query: 121 CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKP 180
           C S +EIWT L+ +F SR LA+VM++K KL+  +KG +SLKDYF KI++ VD+LA  GK 
Sbjct: 121 CKSAREIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKK 180

Query: 181 VETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLP 240
           + TEDHI++IL+GLG +F++++SVI+A+  PQ++ EV +LLL QE RNE  +   DGSLP
Sbjct: 181 LSTEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNERNLINSDGSLP 240

Query: 241 SANIVVNSKSIESKSTKTNNAQSSQNFSP--GNRGSRGGGRSGRGGRSGSWNNRNKVQCQ 300
           S N+ +N       S+K NN   S+ F+P   N   RG G + R     +W   NK QCQ
Sbjct: 241 SVNLTLND------SSKKNNLHQSKCFNPHQSNYSQRGRGTNNRSSNRRNWTGNNKPQCQ 300

Query: 301 LCTKFGHTASHCFFRY 313
           +C +FGHTA  C+ R+
Sbjct: 301 ICGRFGHTALRCYMRF 305

[Close]

BLAST of Lag0014920 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-63
Identity = 142/267 (53.18%), Postives = 189/267 (70.79%), Query Frame = 0


Query: 3   SLSSSNTAVDDSSASLSSQIFGPGNKISVVKLTDENFLLWKFQILMALEGYDLEHHLVD- 62
           S +SS   V+++  S    IFG GNKIS+VKL+D+NFLLWKFQIL ALE YDLE+     
Sbjct: 2   SSNSSPLGVENTEVS----IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESE 61

Query: 63  -DSPPQFLTSTAQSSSVEGASVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIHCT 122
            + P ++LTST  SS+    S T+T NP Y +WKR +++IS WL+GSMSE+IL+QM+HC 
Sbjct: 62  LEPPSKYLTSTGSSST----SATRTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCK 121

Query: 123 STKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHYVDALAAVGKPVE 182
           S KEIW  LQ IF+SR LAQ M+ K KL  ++KG MSLK+YF KIQ  VDALA++ KPV 
Sbjct: 122 SAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVS 181

Query: 183 TEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALLLTQENRNESKIATPDGSLPSA 242
           ++DHILYIL GLG D++SM+S+ISA+    S+ EVM+LLLTQE++NESK+ + + +LP  
Sbjct: 182 SDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKLIS-ETALPYV 241

Query: 243 NIVVNS--KSIESKSTKTNNAQSSQNF 266
            IV  +  K  ES    + N   + +F
Sbjct: 242 KIVTQTTEKGAESYIRNSQNNYHNSHF 259

[Close]

BLAST of Lag0014920 vs. ExPASy TrEMBL
Match: A0A5D3CRZ7 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00160 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.9e-60
Identity = 139/285 (48.77%), Postives = 189/285 (66.32%), Query Frame = 0


Query: 46  ILMALEGYDLEHHLVDDSPP--QFLTSTAQSSSV----EGASVTKTLNPAYTIWKRQDKV 105
           IL ALE Y LE +    + P  +++      SSV      A     LN  Y +WKRQD++
Sbjct: 14  ILTALEAYVLESYFDSTAEPATKYINQPPNQSSVAVESSSAPPISVLNSEYKVWKRQDRL 73

Query: 106 ISSWLVGSMSEDILHQMIHCTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLK 165
           ISSWL+GSMSEDIL+QM+H TS K+IW  LQ I++SR LA+ M+ K KL  ++KG MSLK
Sbjct: 74  ISSWLLGSMSEDILNQMLHFTSAKQIWKTLQGIYSSRYLAKAMQFKNKLHNMKKGAMSLK 133

Query: 166 DYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAKMGPQSVHEVMALL 225
           +YF KIQ  VDALA++ KP+ T+DHILYIL+GLG++++S++S+ISA+    SV + M+LL
Sbjct: 134 EYFLKIQQCVDALASINKPISTDDHILYILAGLGNEYQSIISIISARTDSPSVQDNMSLL 193

Query: 226 LTQENRNESKIATPDGSLPSANIVVNSKSIES--KSTKTNNAQSSQNF------SPGNRG 285
           LTQE++ ESKI T + SLP+ N+  +++ I S  K ++  +   S N       S  +  
Sbjct: 194 LTQESQIESKI-TSEVSLPTVNMTTHTRDISSLEKESEVTHRGGSNNLCYTTTNSQYHHK 253

Query: 286 SRGGGRSGRGGRSGSWNNRNKVQCQLCTKFGHTASHCFFRYAPSN 317
           SR GGRS RGGR     NR+K QCQ+C+KFGH A  C+FRY P N
Sbjct: 254 SRAGGRSNRGGR----GNRHKTQCQICSKFGHVADRCYFRYTPRN 293

[Close]

BLAST of Lag0014920 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-11
Identity = 52/205 (25.37%), Postives = 107/205 (52.20%), Query Frame = 0


Query: 93  WKRQDKVISSWLVGSMSEDILHQMIH--CTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQT 152
           WK +D ++  W+ G++++ +L  +I   CT+ +++W  L+ +F     A+ ++ + +L+T
Sbjct: 67  WKERDGLVKMWIYGTITDSLLDTIIKVGCTA-RDLWLSLENLFRDNKEARALQFENELRT 126

Query: 153 LQKGGMSLKDYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAKMGPQ 212
                +S+ +Y  K++   D L  V  P+     ++++L+GL   ++ +++VI  K    
Sbjct: 127 TTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFP 186

Query: 213 SVHEVMALLLTQENR--NESKIATPDGSLPSANIVVNS--KSIESKSTKTNNAQSSQNFS 272
           S  E  ++LL +E+R  N+SK +    + PS + V+ +  +  E    + +N  S+    
Sbjct: 187 SFTEARSMLLMEESRLSNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMGRG 246

Query: 273 PGNRGSRGGGRSGRGGRSGSWNNRN 292
              + +RGGG S      G +NN N
Sbjct: 247 RSKKKNRGGGSS-----DGRYNNNN 265

[Close]

BLAST of Lag0014920 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-09
Identity = 52/204 (25.49%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 93  WKRQDKVISSWLVGSMS-EDILHQMIHCTSTKEIWTCLQQIFTSRNLAQVMKVKTKLQTL 152
           W+++D ++   L G+++ +      +  +++++IW  ++  F +   A+ +++ ++L+T 
Sbjct: 65  WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTK 124

Query: 153 QKGGMSLKDYFSKIQHYVDALAAVGKPVETEDHILYILSGLGSDFESMVSVISAKMGPQS 212
             G M + DY+ K++   D+L  V  PV   + ++Y+L+GL   F+++++VI  +    S
Sbjct: 125 DIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPS 184

Query: 213 VHEVMALLLTQENRNESKIATPDGSLPSANIVVNSKSIE----SKSTKTNNAQSSQNFSP 272
             +   +L  +E+R +  I       P+   V +S S      S++    N Q S     
Sbjct: 185 FDDAATMLQEEEDRLKRAIK------PNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQM 244

Query: 273 GNRGSRGGGRS---GRGGRSGSWN 289
           G RG RG G +   GRGGR   +N
Sbjct: 245 GYRG-RGRGNNIFRGRGGRFSYYN 261

[Close]

BLAST of Lag0014920 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-07
Identity = 50/243 (20.58%), Postives = 106/243 (43.62%), Query Frame = 0


Query: 5   SSSNTAVDDSSASLSSQIFGPGNKISVVKLT--DENFLLWKFQILMALEGYDLEHHLVDD 64
           S S T+  DS   L   I  P +  S+ KL+  ++N++ WK +                 
Sbjct: 7   SVSPTSDPDSPYYLPPDIHHPSD-FSIQKLSKDEDNYVAWKIRF---------------- 66

Query: 65  SPPQFLTSTAQSSSVEGA-SVTKTLNPAYTIWKRQDKVISSWLVGSMSEDILHQMIHCTS 124
               FL  T +   ++G        +P Y  W++ + ++  WL+ SM++ +L  +++  +
Sbjct: 67  --RSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAET 126

Query: 125 TKEIWTCLQQIFTSRNLAQVMKVKTKLQTLQKGGMSLKDYFSKIQHY------------- 184
             ++W  L+++F      ++ +++ +L TL++GG S+++YF K+                
Sbjct: 127 AHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPEC 186

Query: 185 ------VDALAAVGKPVETEDHILYILS-GLGSDFESMVSVISAKMGPQSVHEVMALLLT 225
                  +      +  E E    +++   L   FE++ + I  +  P S+HE  A++  
Sbjct: 187 KCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKD 230

The following BLAST results are available for this feature:

BLAST of Lag0014920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048297.1	1.2e-80	52.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	1.2e-80	52.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_022154487.1	4.1e-68	47.78	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0053143.1	8.9e-63	53.18	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0046195.1	2.0e-59	48.77	putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa] >TYK14162.1 p...	[more]

BLAST of Lag0014920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	8.4e-24	27.39	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.2e-19	26.35	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0014920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U233	6.0e-81	52.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	6.0e-81	52.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6J1DLT9	2.0e-68	47.78	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7UB21	4.3e-63	53.18	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CRZ7	9.9e-60	48.77	Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Lag0014920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	2.9e-11	25.37	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	6.0e-09	25.49	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G21280.1	1.9e-07	20.58	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 93..228 e-value: 1.6E-21 score: 76.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..271
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 39..319
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 39..319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014920.1	Lag0014920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0005488	binding