Lag0014892 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014892
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	chr12: 5609332 .. 5610051 (-)
RNA-Seq Expression	Lag0014892
Synteny	Lag0014892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGCCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGTAATTTCCTCAAAAGCTTTCGATTTCAACGAAGTGTGCTCAAACGTAAATTAACTATGAAATCTGTCTGATTTGAGTTTACTGCGATGACTGAGGATCGAGAATAGATCGGAAACGAATGCTGAATTGAGTAGAAAATAAGCTGAATGTTCTTGTTTGTGATTATTTCTTTAGTTGCTTATTCTGTGAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCGGCGTTGATGACTTCGATGCTTTCTGTTTCGCGACATAGTTATGGCTGGCTTTCTGAAGGTACTTTCAGTCTCCTGTTCTTCTAGTAGTTTCTAGGAATCGGACTAAGTTATGAGCTATGAGTAGGTATTTGTGTGCTCTGCAATTATACTAGGATGAATTTTACTCTTTTCAATGTTCTTGTTATGCTGTCAGTTTTTTCTTTGGTTCTGGTTTTTGTTGGCAAAAAATCAAATCTGCTGTGTTGGTTGGATAGCTTTATTAGTTACTTGGATTGGCTTTGCGATGTACAACGCAGAGGAGGATAACATGTGA

mRNA sequence

ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGCCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCGGCGTTGATGACTTCGATGCTTTCTGTTTCGCGACATAGTTATGGCTGGCTTTCTGAAGTTACTTGGATTGGCTTTGCGATGTACAACGCAGAGGAGGATAACATGTGA

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGCCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCGGCGTTGATGACTTCGATGCTTTCTGTTTCGCGACATAGTTATGGCTGGCTTTCTGAAGTTACTTGGATTGGCTTTGCGATGTACAACGCAGAGGAGGATAACATGTGA

Protein sequence

MASFAARAIFRSSSASGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTWIGFAMYNAEEDNM

Homology

[Close]

BLAST of Lag0014892 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-32
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MASFAARAIFRSSSASGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFA RAIFRSSS    KAATLLS GARAAPARSPFRIASKRPFSQCS R+PVEMSFCV
Sbjct: 1  MASFAGRAIFRSSSG---KAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVT 94
          ESMLPFHSATSSALM SMLSVSRH+YGWLSEVT
Sbjct: 61 ESMLPFHSATSSALMISMLSVSRHNYGWLSEVT 90

[Close]

BLAST of Lag0014892 vs. NCBI nr
Match: XP_038887456.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 8.5e-32
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MASFAARAIFRSSSASGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFA RAIFRSSS    KAATLLS GARAAPARSPFRIASKRPFSQCS R+PVEMSFCV
Sbjct: 1  MASFAGRAIFRSSSG---KAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEV 93
          ESMLPFHSATSSALM SMLSVSRH+YGWLSEV
Sbjct: 61 ESMLPFHSATSSALMISMLSVSRHNYGWLSEV 89

[Close]

BLAST of Lag0014892 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MASFAARAIFRSSSASGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFA RAIFRSSS    KAATLLS GARAAPARSPFRIASKRPFSQCS R+PVEMSFCV
Sbjct: 1  MASFAGRAIFRSSSG---KAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSE 92
          ESMLPFHSATSSALM SMLSVSRH+YGWLSE
Sbjct: 61 ESMLPFHSATSSALMISMLSVSRHNYGWLSE 88

[Close]

BLAST of Lag0014892 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 5.5e-31
Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 1  MASFAARAIFRSSSASGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAI RSS     KAATLLS GARAAPARSPFRIASKRP SQC+ R+PVEMSFCV
Sbjct: 1  MASFAARAISRSSFG---KAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVT 94
          ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVT
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVT 90

[Close]

BLAST of Lag0014892 vs. NCBI nr
Match: KAA0039497.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 9.4e-31
Identity = 81/95 (85.26%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MASFAARAIFRSSSASGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAIFRSSS    KAATLLSAGARAAPARSPFRIASKRPFS  S R+P+EMSFCV
Sbjct: 1  MASFAARAIFRSSSG---KAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTWI 96
          ESMLPFHSATSSALMTSMLSVS HSYGWLSE  ++
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSPHSYGWLSEAAFL 92

[Close]

BLAST of Lag0014892 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-10
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 6  ARAIFRSSSASGCKAAT-LLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCVESML 65
          AR++ R++S+    A+T   ++ A++AP    FR  ++R       R PVE+SFCVES+L
Sbjct: 10 ARSMLRAASSRSAAASTGRFASQAKSAPPL--FRATARRSPLLSPLRNPVELSFCVESLL 69

Query: 66 PFHSATSSALMTSMLSVSRHSYGWLSE 92
          P+HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 PYHSATASALMTSKLSISGQTYGWLSD 94

The following BLAST results are available for this feature:

BLAST of Lag0014892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887455.1	2.2e-32	89.25	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his...	[more]
XP_038887456.1	8.5e-32	89.13	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa his...	[more]
XP_038887457.1	2.5e-31	89.01	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa his...	[more]
XP_023554650.1	5.5e-31	88.17	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
KAA0039497.1	9.4e-31	85.26	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0014892 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	1.1e-10	48.28	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014892.1	Lag0014892.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy
cellular_component	GO:0016021	integral component of membrane