Lag0014891 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014891
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Locationchr12: 5605235 .. 5607276 (+)
RNA-Seq ExpressionLag0014891
SyntenyLag0014891
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGGCAGCAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGTGGCCACACTCTCACGGTCAAGGTTGTGAGCTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGGTATGTTTCTCTGCAGCCATAAAAGTATTTGTTAGCCTAATTTTTCTCATCTTTTGGATGTCTCCATGTGTACGGTCATGAAAAAACATTGGATAGAATGGATGGATACTAGTTTCCTTTTTCTTTGCTGTGAGTGAGAATTCTTTTGAATAGTGAGTGATTTTCTTTTTTGTTTATGAATTTCATCTTCGTGCCTCGTGAATTTAGTATTCTTCTCTGTAGCTTTTGTTTTTTTTATAACTAGCAATAGAAACTTTTCCTTGATAATAGAGAAGTTACTCCCTTCAGGGGTATTCTGAAAGGTCGCCCATCAAAGAAACCTCCTTTTATAGTTACTAGAAGGTGCCCCAACAAAAATTTATTTAAGCTTATAGTGACTCGTCTGTGCTGAACCACCCTGGATCTTTTGCTCTGTTAATTTTTTTTGAATGGATGTGTTCTAATATAAATAGAATTTGGGTGTTGAGATAATTGTATAACAAGGAGTGGTATCAAAGCTAGGGTCTTATCTAATGGAGGTATCTCAATCAATCAATGAGACTCAAGAAAACTTTAAATGACTTTAACAAGGTTTAAAATAGAAATGCTTTTTTGAGCCGAAGACTTTTAATCTATGGAGGAAGAATGTGTGTGATTGTTGTTCAATATAAGTTCGGAAGATTCCAGCAGATTTGAAGGGTTTCTTAGATACCTTGATTTGAGGGTGCAAAGGAAACTACATTGTTGAATTTTGAAACAGACTACCTGGAATTCTTTTAGGGAAGAGTGTCTCTAGTTCTAGCTCTTGAATGGAGCTTGAGGACAGTTAGTGTATGAGTTTTCTGGTCCGTGAGTTTCTTCTTTATTATTTCTGGAGCAAGTCATCCTCTCTGAGGTATGAGGGATGTTATTGGTCAAGATAGAGCTCATTTTTGTTCATCTTCTGTAAATCAGGAGCTTTGAGATAGTGGATTAAGGTGTATGGGTGCAGACACCCTTTATGTCTCACCTATGCTTCTTCTGACTTAAAATCTGCTGTTAATTTAATTGCATAGCCGTTTCTATATCTCTTGCCTTGAACGTAGTGATTGGTGTTTTTGGCTCTGCATGGTTATAAGAACCTATGGCAATCCATTTGTGGGTTTGGGTGGAAGAGGACAAGGAACCAGCCCTTCTTCACAGTCATCTTGTTCGTTATCTTGGCTGTTAGAGAAGTTGTTTACTATTTTTATGGTATATGTATGCTCTGTTTAGCGGATTTTCAACAACCAATGTACTTTTCAACATTCTTTTGCATAAAAAAGCTATTCTGAAGCTGGATGGTGACATTTTTTTATTTTTGGTTTTTGAGATGAATGCAATGTACATTTATTTTTTTAGATTAGTGGGACAGTCATCCTAATTAGAAAAAAAGACCTGAGTGTGTAAGTCTTACTTGAGTTTGTGTTGGGGATAAAATTTGTTCATTATTTGGGGATTAGTCACATTCTGAGGCTGGGCGGTCATGTATTTGAGTTTGTGCTCGATTTCAGGTTTTTGTGTATGTTGTAGAGAGGCAGTGGAGTAATCTTCAATCCTTATGGTGTTCTGTTGTCTAATTAAACAAATGGTTGTAACTTTTGCAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTTGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA

mRNA sequence

ATGGCGACGGCAGCAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGTGGCCACACTCTCACGGTCAAGGTTGTGAGCTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTTGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA

Coding sequence (CDS)

ATGGCGACGGCAGCAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGTGGCCACACTCTCACGGTCAAGGTTGTGAGCTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTTGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA

Protein sequence

MATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Homology
BLAST of Lag0014891 vs. NCBI nr
Match: XP_022136009.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-71
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MATAAVNAPAKRKPVFIKVEELKPGTSGHTL VKVVSSKNVK+VNKGGRSAMLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

BLAST of Lag0014891 vs. NCBI nr
Match: XP_038887250.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 7.4e-71
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0

Query: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT AVNAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

BLAST of Lag0014891 vs. NCBI nr
Match: XP_008455497.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 uncharacterized protein E6C27_scaffold430G00240 [Cucumis melo var. makuwa] >TYK21622.1 uncharacterized protein E5676_scaffold150G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 0

Query: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT A NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

BLAST of Lag0014891 vs. NCBI nr
Match: XP_004144523.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical protein Csa_020344 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 0

Query: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT A NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

BLAST of Lag0014891 vs. NCBI nr
Match: XP_022988994.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7022832.1 hypothetical protein SDJN02_16568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.6 bits (693), Expect = 4.1e-69
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 0

Query: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT AVNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRSAM TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

BLAST of Lag0014891 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-47
Identity = 95/142 (66.90%), Postives = 112/142 (78.87%), Query Frame = 0

Query: 2   ATAAVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLT 61
           A A   +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R A   +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAE 121
           RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGRIE   
Sbjct: 68  RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 127

Query: 122 PANFEVKEDNNLSLVEYELVNV 144
            A+F VKEDNNLSLVEYEL+NV
Sbjct: 128 AASFTVKEDNNLSLVEYELINV 149

BLAST of Lag0014891 vs. ExPASy Swiss-Prot
Match: Q97W73 (Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=ssb PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.1e-04
Identity = 32/109 (29.36%), Postives = 46/109 (42.20%), Query Frame = 0

Query: 18  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSAMLTARPQQLTRISECLVGDETGSIV 77
           KV  LKP      +TV+V+ +   + +  K G           +  ISE +VGDETG + 
Sbjct: 4   KVGNLKPNMESVNVTVRVLEASEARQIQTKNG-----------VRTISEAIVGDETGRVK 63

Query: 78  FTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANF 126
            T        +K G  V + NA    FKG ++L      +I  A    F
Sbjct: 64  LTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGF 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136009.14.3e-7198.62uncharacterized protein At4g28440-like [Momordica charantia][more]
XP_038887250.17.4e-7197.24uncharacterized protein At4g28440-like [Benincasa hispida][more]
XP_008455497.12.1e-7096.55PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 unchar... [more]
XP_004144523.11.1e-6995.17uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical pro... [more]
XP_022988994.14.1e-6995.86uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 unchar... [more]
Match NameE-valueIdentityDescription
O494532.0e-4766.90Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P... [more]
Q97W738.1e-0429.36Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain AT... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 26..135
e-value: 1.1E-43
score: 149.6
NoneNo IPR availablePANTHERPTHR31472:SF13EXPRESSED PROTEINcoord: 4..144
NoneNo IPR availablePANTHERPTHR31472OS05G0244600 PROTEINcoord: 4..144
NoneNo IPR availableCDDcd04491SoSSB_OBFcoord: 61..119
e-value: 4.77858E-17
score: 69.1889
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014891.1Lag0014891.1mRNA