Lag0014884 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014884
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Calcium-binding EF-hand family protein
Location	chr12: 5564995 .. 5565408 (+)
RNA-Seq Expression	Lag0014884
Synteny	Lag0014884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAGAACTTTTGGATGGCGCCACAATTATCAACTTTGTCGAAGATGAAGAAGCTTTTGGTACGACAATTAGAGAGCGTTTCAATCACCTCGACACCAATAGAGATGGTGTTCTCTCTTATGGAGAGATGTTGAGGGAGTTGCAAAGTCTTAGAGTGTTCGAGACTCATTTCGGGATCGATGTGAAACCCGACCCGGACGAGCTCTCTTCGGTCTACGGCTCGTTGTTCTTGCAATTTGATCGGGACTGCAATGGAAAAATTGACCTAGATGAGTTCATGGCGGAAACTAAGAGGATGATGTTGGCCATGGCGAATGGGATTGGATTTTTGCCTATTCAAATGGTGTTGGAAGAAAACAGCTTCTTGAAGAAAGCTGTGGAGAGAGAATCCACTAGAGTGGCTGCTTAA

mRNA sequence

ATGAGCGTAGAACTTTTGGATGGCGCCACAATTATCAACTTTGTCGAAGATGAAGAAGCTTTTGGTACGACAATTAGAGAGCGTTTCAATCACCTCGACACCAATAGAGATGGTGTTCTCTCTTATGGAGAGATGTTGAGGGAGTTGCAAAGTCTTAGAGTGTTCGAGACTCATTTCGGGATCGATGTGAAACCCGACCCGGACGAGCTCTCTTCGGTCTACGGCTCGTTGTTCTTGCAATTTGATCGGGACTGCAATGGAAAAATTGACCTAGATGAGTTCATGGCGGAAACTAAGAGGATGATGTTGGCCATGGCGAATGGGATTGGATTTTTGCCTATTCAAATGGTGTTGGAAGAAAACAGCTTCTTGAAGAAAGCTGTGGAGAGAGAATCCACTAGAGTGGCTGCTTAA

Coding sequence (CDS)

ATGAGCGTAGAACTTTTGGATGGCGCCACAATTATCAACTTTGTCGAAGATGAAGAAGCTTTTGGTACGACAATTAGAGAGCGTTTCAATCACCTCGACACCAATAGAGATGGTGTTCTCTCTTATGGAGAGATGTTGAGGGAGTTGCAAAGTCTTAGAGTGTTCGAGACTCATTTCGGGATCGATGTGAAACCCGACCCGGACGAGCTCTCTTCGGTCTACGGCTCGTTGTTCTTGCAATTTGATCGGGACTGCAATGGAAAAATTGACCTAGATGAGTTCATGGCGGAAACTAAGAGGATGATGTTGGCCATGGCGAATGGGATTGGATTTTTGCCTATTCAAATGGTGTTGGAAGAAAACAGCTTCTTGAAGAAAGCTGTGGAGAGAGAATCCACTAGAGTGGCTGCTTAA

Protein sequence

MSVELLDGATIINFVEDEEAFGTTIRERFNHLDTNRDGVLSYGEMLRELQSLRVFETHFGIDVKPDPDELSSVYGSLFLQFDRDCNGKIDLDEFMAETKRMMLAMANGIGFLPIQMVLEENSFLKKAVERESTRVAA

Homology

[Close]

BLAST of Lag0014884 vs. NCBI nr
Match: XP_022136066.1 (uncharacterized protein LOC111007849 [Momordica charantia])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 116/137 (84.67%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MSVELLDGATIINFVEDEEAFGTTIRERFNHLDTNRDGVLSYGEMLRELQSLRVFETHFG 60
           MSVELLDGATI++FVEDEE FG T++ERF+HLD++RDGVLSYGEMLRELQSLRV ETHFG
Sbjct: 1   MSVELLDGATIVSFVEDEEVFGATVKERFSHLDSDRDGVLSYGEMLRELQSLRVLETHFG 60

Query: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKIDLDEFMAETKRMMLAMANGIGFLPIQMVLEE 120
           IDVKPDPDE+S+VYGSLFL FDRDCNGK+DL EFMAETK+MMLAMANGIG LPIQMVLEE
Sbjct: 61  IDVKPDPDEVSAVYGSLFLLFDRDCNGKVDLGEFMAETKKMMLAMANGIGLLPIQMVLEE 120

Query: 121 NSFLKKAVERESTRVAA 138
           N FLKKAVERE+T++AA
Sbjct: 121 NGFLKKAVERETTKLAA 137

[Close]

BLAST of Lag0014884 vs. NCBI nr
Match: XP_038888629.1 (uncharacterized protein LOC120078427 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 4.7e-59
Identity = 114/137 (83.21%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MSVELLDGATIINFVEDEEAFGTTIRERFNHLDTNRDGVLSYGEMLRELQSLRVFETHFG 60
           MSVE+LD ATI+NFVEDEEAF  +IRERF+HLD +RDGVL YGEML+ELQSLRV ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSDSIRERFSHLDLDRDGVLCYGEMLKELQSLRVLETHFG 60

Query: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKIDLDEFMAETKRMMLAMANGIGFLPIQMVLEE 120
           ID KPDPDELSSVYGSLF QFDRDCNGK+DL EFMAETK+MMLAMANGIGF P+QM+LEE
Sbjct: 61  IDTKPDPDELSSVYGSLFSQFDRDCNGKVDLGEFMAETKKMMLAMANGIGFSPVQMLLEE 120

Query: 121 NSFLKKAVERESTRVAA 138
           NSFLKKAV+REST++AA
Sbjct: 121 NSFLKKAVDRESTKLAA 137

[Close]

BLAST of Lag0014884 vs. NCBI nr
Match: XP_023529818.1 (uncharacterized protein LOC111792532 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 4.7e-59
Identity = 114/137 (83.21%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MSVELLDGATIINFVEDEEAFGTTIRERFNHLDTNRDGVLSYGEMLRELQSLRVFETHFG 60
           MSVE+LDGATI+NFVED+E FG  +RERF+HLD + DGVLSY EMLRELQSLRVFETHFG
Sbjct: 1   MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKIDLDEFMAETKRMMLAMANGIGFLPIQMVLEE 120
           IDVKPDPDELSSVYGSLFLQFDRDCNGK+D+ EFM ETK+MM+AMANGIG LP+QMVLEE
Sbjct: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKVDVGEFMEETKKMMVAMANGIGLLPVQMVLEE 120

Query: 121 NSFLKKAVERESTRVAA 138
           NS LKKAVEREST+V A
Sbjct: 121 NSLLKKAVERESTKVGA 137

[Close]

BLAST of Lag0014884 vs. NCBI nr
Match: KAG6589130.1 (hypothetical protein SDJN03_17695, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-58
Identity = 113/137 (82.48%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MSVELLDGATIINFVEDEEAFGTTIRERFNHLDTNRDGVLSYGEMLRELQSLRVFETHFG 60
           MSVE+LDGATI+NFVED+E FG  +RERF+HLD + DGVLSY EMLRELQSLRVFETHFG
Sbjct: 1   MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKIDLDEFMAETKRMMLAMANGIGFLPIQMVLEE 120
           IDVKPDPDELSSVYGSLFLQFDRDCNGK+D+ EFM ETK+MM+AMANGIGF P+QMVLEE
Sbjct: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKVDVGEFMEETKKMMVAMANGIGFSPVQMVLEE 120

Query: 121 NSFLKKAVERESTRVAA 138
           NS LK+AVEREST+V A
Sbjct: 121 NSLLKRAVERESTKVGA 137

[Close]

BLAST of Lag0014884 vs. NCBI nr
Match: XP_022930660.1 (uncharacterized protein LOC111437061 [Cucurbita moschata])

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-58
Identity = 113/137 (82.48%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MSVELLDGATIINFVEDEEAFGTTIRERFNHLDTNRDGVLSYGEMLRELQSLRVFETHFG 60
           MSVE+LD ATI+NFVED+E FG  +RERF+HLD + DGVLSY EMLRELQSLRVFETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYGSLFLQFDRDCNGKIDLDEFMAETKRMMLAMANGIGFLPIQMVLEE 120
           IDVKPDPDELSSVYGSLFLQFDRDC+GK+D+ EFM ETK+MM+AMANGIGF P+QMVLEE
Sbjct: 61  IDVKPDPDELSSVYGSLFLQFDRDCDGKVDVGEFMEETKKMMVAMANGIGFSPVQMVLEE 120

Query: 121 NSFLKKAVERESTRVAA 138
           NSFLKKAVEREST+V A
Sbjct: 121 NSFLKKAVERESTKVGA 137

The following BLAST results are available for this feature:

BLAST of Lag0014884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136066.1	1.5e-60	84.67	uncharacterized protein LOC111007849 [Momordica charantia]	[more]
XP_038888629.1	4.7e-59	83.21	uncharacterized protein LOC120078427 [Benincasa hispida]	[more]
XP_023529818.1	4.7e-59	83.21	uncharacterized protein LOC111792532 [Cucurbita pepo subsp. pepo]	[more]
KAG6589130.1	1.0e-58	82.48	hypothetical protein SDJN03_17695, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930660.1	1.8e-58	82.48	uncharacterized protein LOC111437061 [Cucurbita moschata]	[more]

BLAST of Lag0014884 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 73..101 e-value: 2.7 score: 14.2 coord: 24..52 e-value: 0.18 score: 20.9
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 24..96 e-value: 5.7E-12 score: 45.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 9.854874
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 9.101698
None	No IPR available	GENE3D	1.10.238.10		coord: 17..104 e-value: 5.4E-12 score: 47.7
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..133
None	No IPR available	PANTHER	PTHR34574:SF10	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-LIKE	coord: 1..133
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 25..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014884.1	Lag0014884.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding