Lag0014875 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014875
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glycine rich protein
Location	chr12: 5447478 .. 5448111 (-)
RNA-Seq Expression	Lag0014875
Synteny	Lag0014875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTAAAGCTTTTGCTTTCCTCGGCCTTCTCTTTGCCATGGTCGTTCTCATCTCACCGGAAGCGGTGGCGGTGGCAGTGGCGAGAGACCTCGCTCCGACTCCCAAGAATAACAACGGTGAGAGCTTCCCTTCATTATTCATCCTATTAGGGTTGGAGCCATAAATTTTCATAAACCAAAACAAAATTTTATATTCGAACTTTTTATATATATATAATACAATTTTAAAAGAACTCTAAAACCTTAATGTTTTTATATAGTTTTTTTATGTTGGAGGAAATTATCCTCCCTACGTGAGTTCGTTGGGAGTTCAAACTTCTAATCTCTTAGTCGAGAGTACATACTAATTTCTGCTGAACTATGCTCACTTTGACCAACATATTTTAAATTGATAATGTTGCAGAGGTCACAATGAAGACGAATGGGGTAGAGGATGCCAAGTATGGCAGGGAGTACTTTTTCCCCGGATTTGGAAATGATGGTGGCTCCTCTGACTACGACGGTGACTACAGTGGACCCGAAGCTCGTATAGGTCGTTGCAGGTACGGTTGCTGTGGTAACAACGACGATCGCGGCCGGTGCACCCGGTGCTGCAACCCTTTCGGAGAAGTTGTAGATGCAAAACCCTAA

mRNA sequence

ATGAGTTCTAAAGCTTTTGCTTTCCTCGGCCTTCTCTTTGCCATGGTCGTTCTCATCTCACCGGAAGCGGTGGCGGTGGCAGTGGCGAGAGACCTCGCTCCGACTCCCAAGAATAACAACGAGGTCACAATGAAGACGAATGGGGTAGAGGATGCCAAGTATGGCAGGGAGTACTTTTTCCCCGGATTTGGAAATGATGGTGGCTCCTCTGACTACGACGGTGACTACAGTGGACCCGAAGCTCGTATAGGTCGTTGCAGGTACGGTTGCTGTGGTAACAACGACGATCGCGGCCGGTGCACCCGGTGCTGCAACCCTTTCGGAGAAGTTGTAGATGCAAAACCCTAA

Coding sequence (CDS)

ATGAGTTCTAAAGCTTTTGCTTTCCTCGGCCTTCTCTTTGCCATGGTCGTTCTCATCTCACCGGAAGCGGTGGCGGTGGCAGTGGCGAGAGACCTCGCTCCGACTCCCAAGAATAACAACGAGGTCACAATGAAGACGAATGGGGTAGAGGATGCCAAGTATGGCAGGGAGTACTTTTTCCCCGGATTTGGAAATGATGGTGGCTCCTCTGACTACGACGGTGACTACAGTGGACCCGAAGCTCGTATAGGTCGTTGCAGGTACGGTTGCTGTGGTAACAACGACGATCGCGGCCGGTGCACCCGGTGCTGCAACCCTTTCGGAGAAGTTGTAGATGCAAAACCCTAA

Protein sequence

MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLAPTPKNNNEVTMKTNGVEDAKYGREYFFPGFGNDGGSSDYDGDYSGPEARIGRCRYGCCGNNDDRGRCTRCCNPFGEVVDAKP

Homology

[Close]

BLAST of Lag0014875 vs. NCBI nr
Match: KGN43456.1 (hypothetical protein Csa_020456 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-12
Identity = 62/131 (47.33%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLAPT-PKNNNEVTMKTNGVEDAKYGREYF 60
           MSSKAF FLGLL A V+L+S E      ARDLA T  K +NE T++TNGVEDAKYGR  +
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSE----VAARDLAETSSKTDNEATVETNGVEDAKYGRGGY 79

Query: 61  FPGFGN------DGGSSDYD-------GDYSGPEARIGR-CRYGCCGNNDDRGRCTRCCN 116
             G+G        GG   Y        G Y G     GR CRYG CG+        +CC+
Sbjct: 80  DRGYGGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGH--------KCCS 138

[Close]

BLAST of Lag0014875 vs. NCBI nr
Match: NP_001267708.1 (glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-12
Identity = 62/131 (47.33%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLAPT-PKNNNEVTMKTNGVEDAKYGREYF 60
           MSSKAF FLGLL A V+L+S E      ARDLA T  K +NE T++TNGVEDAKYGR  +
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSE----VAARDLAETSSKTDNEATVETNGVEDAKYGRGGY 60

Query: 61  FPGFGN------DGGSSDYD-------GDYSGPEARIGR-CRYGCCGNNDDRGRCTRCCN 116
             G+G        GG   Y        G Y G     GR CRYG CG+        +CC+
Sbjct: 61  DRGYGGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGH--------KCCS 119

[Close]

BLAST of Lag0014875 vs. NCBI nr
Match: XP_022952571.1 (glycine-rich protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 62/120 (51.67%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLAPT-PKNNNEVTMKTNGVEDAKY-GREY 60
           MSSKAF FLGLLFA+V+LIS E      ARDLA T  K  NE T +TNGVEDAKY G + 
Sbjct: 19  MSSKAFIFLGLLFALVLLISSE----VAARDLAETSTKKENEATAETNGVEDAKYGGYDG 78

Query: 61  FFPGFGNDGGSSDYD--GDYSGPEARIGRCRYGCCGNNDDRGRCTRCCNPFGEVVD-AKP 116
            + G G  GG   Y   G Y G       CRYG CG         RCC+  GEVV+ AKP
Sbjct: 79  GYGGRGGYGGRGGYGGRGGYGGGGGYGRGCRYGRCG--------YRCCSYAGEVVEGAKP 126

[Close]

BLAST of Lag0014875 vs. NCBI nr
Match: XP_021890154.1 (glycine-rich protein-like [Carica papaya])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 55/121 (45.45%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLA--PTPKNNNEVTMKTNGVEDAKYGREY 60
           M+SK F  LGL  A+++LIS E      ARDLA   T + + EV  +TNGVE+AKY    
Sbjct: 1   MASKIFLLLGLSLAILLLISSE----VAARDLAETETQQEHGEVEEETNGVEEAKY---- 60

Query: 61  FFPGFGNDGGSSDYDGDYSGP----EARIGRCRYGCCGNN-DDRGRCTRCCNPFGEVVDA 115
             PG+G   G   Y+G Y+G       R G CRYGCC      RG C RCC+  GE VDA
Sbjct: 61  --PGYGGYPGGGGYNGGYNGGRGGYNGRRGYCRYGCCDRGYHGRGGCRRCCHYAGETVDA 111

[Close]

BLAST of Lag0014875 vs. NCBI nr
Match: CEG62450.1 (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-11
Identity = 61/131 (46.56%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLAPT-PKNNNEVTMKTNGVEDAKYGREYF 60
           MSSKAF FLGL  A V+L+S E      ARDLA T  K +NE T++TNGVEDAKYGR  +
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSE----VAARDLAETSSKTDNEATVETNGVEDAKYGRGGY 60

Query: 61  FPGFGN------DGGSSDYD-------GDYSGPEARIGR-CRYGCCGNNDDRGRCTRCCN 116
             G+G        GG   Y        G Y G     GR CRYG CG+        +CC+
Sbjct: 61  DRGYGGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGH--------KCCS 119

[Close]

BLAST of Lag0014875 vs. ExPASy Swiss-Prot
Match: P23137 (Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.9e-04
Identity = 44/118 (37.29%), Postives = 51/118 (43.22%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAMVVLISPEAVAVAVARDLAPTPKNNNEVTMKTNGVEDAKYGREYFF 60
           M SKAF FLGL  A   LIS E VA  +A    P   +        NGV+    G     
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETSNPMKLDGE------NGVDVDGRG----- 60

Query: 61  PGFGNDGGSSDYDGDYSGPEARIG------RCRYGCCGNNDDRGRCTRCCNPFGEVVD 113
            G+ + GG    DG Y G   R G       CRYGCC        C RCC+  GE +D
Sbjct: 61  -GYNDVGG----DGYYGGGRGRGGGGYKRRGCRYGCC--RKGYNGCKRCCSYAGEAMD 100

The following BLAST results are available for this feature:

BLAST of Lag0014875 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43456.1	8.0e-12	47.33	hypothetical protein Csa_020456 [Cucumis sativus]	[more]
NP_001267708.1	8.0e-12	47.33	glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glyc...	[more]
XP_022952571.1	1.4e-11	51.67	glycine-rich protein-like isoform X2 [Cucurbita moschata]	[more]
XP_021890154.1	1.4e-11	45.45	glycine-rich protein-like [Carica papaya]	[more]
CEG62450.1	2.3e-11	46.56	Glycine rich protein [Cucumis sativus]	[more]

BLAST of Lag0014875 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23137	4.9e-04	37.29	Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..78 e-value: 1.9E-8 score: 34.9
IPR010800	Glycine rich protein	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014875.1	Lag0014875.1	mRNA