Lag0014865 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014865
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protochlorophyllide reductase
Location	chr12: 5373320 .. 5373826 (-)
RNA-Seq Expression	Lag0014865
Synteny	Lag0014865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCCCGAGTCGCCGACGAAAGCATGTACAACGCCGGCGGTGTCGACGGCGCCGGCGGAAGAGTTGTCGACGGCGATCGGAGGGAAGGAAATTCATATGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCTCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGCGATATGCTATCTTAATGTAAATGGGTTTCTGTCGTTTCGATTGGATCTGCTTTTCAAAGAGACAAATCGATCGTACAGAACAATATTGTTATAGAGCAATTCGGAAAAAAATATAGTTTGGATTGGAATTTTCTTTCTTTCTTTCTTTACAATATTGTATTACAATTGTCGGGTAGGATTTCGAAATCGTTACTGATGCTTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCCCGAGTCGCCGACGAAAGCATGTACAACGCCGGCGGTGTCGACGGCGCCGGCGGAAGAGTTGTCGACGGCGATCGGAGGGAAGGAAATTCATATGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCTCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGATTTCGAAATCGTTACTGATGCTTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCCGTGAGAAGAAACCTCCACAACATAAGGAAGAGCCCCCGAGTCGCCGACGAAAGCATGTACAACGCCGGCGGTGTCGACGGCGCCGGCGGAAGAGTTGTCGACGGCGATCGGAGGGAAGGAAATTCATATGGGTTTTCGATGATTTACAGTGTTCTTCGAACCCCATTTTCTCTTCTCTCTTGCTTCTCTCAACCTCACGTTAATGGCGTCGACGGGATGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGATTTCGAAATCGTTACTGATGCTTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYNAGGVDGAGGRVVDGDRREGNSYGFSMIYSVLRTPFSLLSCFSQPHVNGVDGMWVSGEFARISEVNHLMDFEIVTDA

Homology

[Close]

BLAST of Lag0014865 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 8.8e-42
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MWRLAAAVRRNLHNIRKSPRVADESMYNAGGVDGAGGRVVDGDRREGNSYGFSMIYSVLR 60
          MWRLAAAVRRNLHNIRKSPRVADESMY+AGG    GGRV+DG+RR+GNSYGFSMIY++LR
Sbjct: 1  MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60

Query: 61 TPFSLLSCFSQPHVNGVDGMWVSGEFARISEVNHLM 97
          TPFSLLSCFSQPHVNGVDGMWVSGEF RISEVNHLM
Sbjct: 61 TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLM 96

[Close]

BLAST of Lag0014865 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-41
Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MWRLAAAVRRNLHNIRKSPRVADESMYNAGGVDGAG--GRVVDGDRREGNSYGFSMIYSV 60
          MWRLAAAVRRNLHNIRKSPRVADESMY  GGVDG G  G VVDGDRREGNSYGFSMIYS+
Sbjct: 1  MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVGAVVDGDRREGNSYGFSMIYSL 60

Query: 61 LRTPFSLLSCFSQPHVNGVDGMWVSGEFARISEVNHLM 97
          LRTPFS+LSCFSQPHVNGVDGMWVSGEF RISEVNHLM
Sbjct: 61 LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM 97

[Close]

BLAST of Lag0014865 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 176.8 bits (447), Expect = 9.7e-41
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MWRLAAAVRRNLHNIRKSPRVADESMYNAGGVDGAGGRVVDGDRREGNSYGFSMIYSVLR 60
          MWRLAAAVRRNLHNIRKSPRVADESMY+AGG    G  V+DG+RREGNSYGFSMIY++LR
Sbjct: 1  MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61 TPFSLLSCFSQPHVNGVDGMWVSGEFARISEVNHLM 97
          TPFSLLSCFSQPHVNGVDGMWVSGEF RISEVNHLM
Sbjct: 61 TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLM 96

[Close]

BLAST of Lag0014865 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 90/100 (90.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1  MWRLAAAVRRNLHNIRKSPRVADESMYNAGGVDGAGGR----VVDGDRREGNSYGFSMIY 60
          MWRLAAAVRRNLHNIRKSPRVADESMY  GGVDG GGR    VVDGDRREGNSYGFSMIY
Sbjct: 1  MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDG-GGRVAAVVVDGDRREGNSYGFSMIY 60

Query: 61 SVLRTPFSLLSCFSQPHVNGVDGMWVSGEFARISEVNHLM 97
          S+LRTPFS+LSCFSQPHVNGVDGMWVSGEF RISEVNHLM
Sbjct: 61 SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM 98

[Close]

BLAST of Lag0014865 vs. NCBI nr
Match: XP_008455515.1 (PREDICTED: uncharacterized protein LOC103495667 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 90/100 (90.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYNAGGVDGAGGR----VVDGDRREGNSYGFSMIY 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGVDG GGR    VVDGDRREGNSYGFSMIY
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDG-GGRVAAVVVDGDRREGNSYGFSMIY 100

Query: 61  SVLRTPFSLLSCFSQPHVNGVDGMWVSGEFARISEVNHLM 97
           S+LRTPFS+LSCFSQPHVNGVDGMWVSGEF RISEVNHLM
Sbjct: 101 SLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM 138

The following BLAST results are available for this feature:

BLAST of Lag0014865 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572248.1	8.8e-42	88.54	hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031744820.1	2.0e-41	90.82	uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica...	[more]
XP_022969305.1	9.7e-41	87.50	uncharacterized protein LOC111468352 [Cucurbita maxima]	[more]
KAA0059153.1	1.7e-40	90.00	uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_008455515.1	1.7e-40	90.00	PREDICTED: uncharacterized protein LOC103495667 [Cucumis melo]	[more]

BLAST of Lag0014865 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014865.1	Lag0014865.1	mRNA