Lag0014845 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0014845
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	amino acid transporter ANTL1
Location	chr12: 5172897 .. 5173307 (+)
RNA-Seq Expression	Lag0014845
Synteny	Lag0014845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGGATTGTTGAGCGCCATTGTTAAACTTGGTCTCTGTATAAACCTGTTCTTCACGATGCCATTGATGATGAATCCAGCTTATGAGATTGTTGAGAGACGATTCTCAAGAGGAAGATACTGTGTGTGGCTGAGATGGCTGCTGGTTGTATTGGCAACTTTAATGGCGATGTGGGTTCCCAATTTTACAGATTTCTTGTCTCTGGTTGGGAGTGGGCTCTGCTGTTCATTGGGATTTGTGCTGCCTGCATTTTTTCATCTGCTGGTTTTCAAGGAAGAAATGGGTTGGAAAGGTTGGTGTGTGGATGTGTTCATTGTAGTTTCTGGTGTTGTTCTTGGAGTTGCTGGGACTGTGAGTGCTGTGGAACAGATGTATCTTGCAAAGGAAACTTCCATTTTAGCTTAG

mRNA sequence

ATGGGTCCTGGATTGTTGAGCGCCATTGTTAAACTTGGTCTCTGTATAAACCTGTTCTTCACGATGCCATTGATGATGAATCCAGCTTATGAGATTGTTGAGAGACGATTCTCAAGAGGAAGATACTGTGTGTGGCTGAGATGGCTGCTGGTTGTATTGGCAACTTTAATGGCGATGTGGGTTCCCAATTTTACAGATTTCTTGTCTCTGGTTGGGAGTGGGCTCTGCTGTTCATTGGGATTTGTGCTGCCTGCATTTTTTCATCTGCTGGTTTTCAAGGAAGAAATGGGTTGGAAAGGTTGGTGTGTGGATGTGTTCATTGTAGTTTCTGGTGTTGTTCTTGGAGTTGCTGGGACTGTGAGTGCTGTGGAACAGATGTATCTTGCAAAGGAAACTTCCATTTTAGCTTAG

Coding sequence (CDS)

ATGGGTCCTGGATTGTTGAGCGCCATTGTTAAACTTGGTCTCTGTATAAACCTGTTCTTCACGATGCCATTGATGATGAATCCAGCTTATGAGATTGTTGAGAGACGATTCTCAAGAGGAAGATACTGTGTGTGGCTGAGATGGCTGCTGGTTGTATTGGCAACTTTAATGGCGATGTGGGTTCCCAATTTTACAGATTTCTTGTCTCTGGTTGGGAGTGGGCTCTGCTGTTCATTGGGATTTGTGCTGCCTGCATTTTTTCATCTGCTGGTTTTCAAGGAAGAAATGGGTTGGAAAGGTTGGTGTGTGGATGTGTTCATTGTAGTTTCTGGTGTTGTTCTTGGAGTTGCTGGGACTGTGAGTGCTGTGGAACAGATGTATCTTGCAAAGGAAACTTCCATTTTAGCTTAG

Protein sequence

MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMWVPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTVSAVEQMYLAKETSILA

Homology

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BLAST of Lag0014845 vs. NCBI nr
Match: XP_004153351.2 (amino acid transporter AVT3B [Cucumis sativus] >KGN43344.1 hypothetical protein Csa_020316 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-67
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEI+ERRFSRGRYCVWLRWLLVVLATL+AMW
Sbjct: 344 MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIIERRFSRGRYCVWLRWLLVVLATLVAMW 403

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVD+FIVVSG+VLGVAGTV
Sbjct: 404 VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDLFIVVSGIVLGVAGTV 463

Query: 121 SAVEQMYLAKETSILA 137
           SAVEQMY AKETS ++
Sbjct: 464 SAVEQMYFAKETSSIS 479

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BLAST of Lag0014845 vs. NCBI nr
Match: XP_008447834.1 (PREDICTED: amino acid transporter ANTL1 [Cucumis melo] >TYK23281.1 amino acid transporter ANTL1 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 3.6e-67
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEI+ERRFSRGRYCVWLRWLLVVLATLMAMW
Sbjct: 297 MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIIERRFSRGRYCVWLRWLLVVLATLMAMW 356

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVD+FIVVSG+VLGVAGT+
Sbjct: 357 VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDLFIVVSGIVLGVAGTI 416

Query: 121 SAVEQMYLAKETSILA 137
           SAVEQMY AKE+S ++
Sbjct: 417 SAVEQMYFAKESSSIS 432

[Close]

BLAST of Lag0014845 vs. NCBI nr
Match: XP_038888481.1 (amino acid transporter AVT3B-like [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 127/136 (93.38%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEI+ERRFSRGRYCVWLRWLLVVLATLMAMW
Sbjct: 297 MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIIERRFSRGRYCVWLRWLLVVLATLMAMW 356

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWC+D+ IVVSG+VLGVAGTV
Sbjct: 357 VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCLDLMIVVSGIVLGVAGTV 416

Query: 121 SAVEQMYLAKETSILA 137
           SAVEQMY AKETS ++
Sbjct: 417 SAVEQMYFAKETSSIS 432

[Close]

BLAST of Lag0014845 vs. NCBI nr
Match: XP_022969105.1 (amino acid transporter AVT3B-like [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEI+ERRFSRGRYC WLRWLLVV+ATLMA+W
Sbjct: 297 MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIIERRFSRGRYCFWLRWLLVVMATLMAIW 356

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNFTDFLSLVGSGLCCSLGFV+PAFFHLLVFK+EMGWKGWC+D+ IVVSG+VLGVAGTV
Sbjct: 357 VPNFTDFLSLVGSGLCCSLGFVVPAFFHLLVFKDEMGWKGWCLDLVIVVSGIVLGVAGTV 416

Query: 121 SAVEQMYLA 130
           SAVEQMY A
Sbjct: 417 SAVEQMYFA 425

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BLAST of Lag0014845 vs. NCBI nr
Match: XP_023554485.1 (amino acid transporter AVT3B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEI+ERRFSRGRYC WLRWLLVV+ATLMA+W
Sbjct: 297 MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIIERRFSRGRYCFWLRWLLVVMATLMAIW 356

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNFTDFLSLVGSGLCCSLGFV+PAFFHLLVFK+EMGWKGWC+D+ IVVSG+VLGVAGTV
Sbjct: 357 VPNFTDFLSLVGSGLCCSLGFVVPAFFHLLVFKDEMGWKGWCLDLVIVVSGIVLGVAGTV 416

Query: 121 SAVEQMYLA 130
           SAVEQMY A
Sbjct: 417 SAVEQMYFA 425

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BLAST of Lag0014845 vs. ExPASy Swiss-Prot
Match: Q9SVG0 (Amino acid transporter AVT3C OS=Arabidopsis thaliana OX=3702 GN=AVT3C PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-45
Identity = 88/130 (67.69%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           +G GL+S +V+LGLCINLFFT PLMMNP +EIVERRFSRG Y  WLRW+LV+  TL+A++
Sbjct: 306 LGAGLVSTVVQLGLCINLFFTFPLMMNPVFEIVERRFSRGMYSAWLRWVLVLAVTLVALF 365

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNF DFLSLVGS  CC LGFVLPA FHLLVFKEEMGW  W  D  IVV GVVL V+GT 
Sbjct: 366 VPNFADFLSLVGSSTCCVLGFVLPALFHLLVFKEEMGWLQWSSDTAIVVLGVVLAVSGTW 425

Query: 121 SAVEQMYLAK 131
           S++ +++  K
Sbjct: 426 SSLSEIFSVK 435

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BLAST of Lag0014845 vs. ExPASy Swiss-Prot
Match: F4ILY9 (Amino acid transporter AVT3B OS=Arabidopsis thaliana OX=3702 GN=AVT3B PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-43
Identity = 82/127 (64.57%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           +G G++S++V+LGLCINLFFT PLMMNP +EIVERRF  G YCVWLRWLLV+  TL+A+ 
Sbjct: 285 LGAGVVSSLVQLGLCINLFFTFPLMMNPVFEIVERRFWSGMYCVWLRWLLVLAVTLVALL 344

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNF DFLSLVGS +CC+LGFVLP+ FHL+VFK+EM WK   +DV I++ GV+LGV+GT 
Sbjct: 345 VPNFADFLSLVGSSVCCALGFVLPSLFHLMVFKDEMEWKQRALDVGILLLGVILGVSGTW 404

Query: 121 SAVEQMY 128
           S++ +++
Sbjct: 405 SSLTEIF 411

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BLAST of Lag0014845 vs. ExPASy Swiss-Prot
Match: Q9FKY3 (Amino acid transporter AVT3A OS=Arabidopsis thaliana OX=3702 GN=AVT3A PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-33
Identity = 69/130 (53.08%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MGPGLLSAIVKLGLCINLFFTMPLMMNPAYEIVERRFSRGRYCVWLRWLLVVLATLMAMW 60
           +G G++S +V+LGL INLFFT PLMM P YE+VERR    RY VW+RW  V++ TL+A+ 
Sbjct: 297 LGTGVVSTLVQLGLAINLFFTFPLMMQPVYEVVERRLCSSRYSVWVRWATVLVVTLVALL 356

Query: 61  VPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWCVDVFIVVSGVVLGVAGTV 120
           VPNF DFLSLVGS +C  LGFVLP+ FHL  FK E+      VDV + + GV++ + GT 
Sbjct: 357 VPNFADFLSLVGSSVCVVLGFVLPSLFHLQAFKNELSITRIVVDVLVFLIGVMIAITGTW 416

Query: 121 SAVEQMYLAK 131
           +AV ++  +K
Sbjct: 417 TAVHEILTSK 426

[Close]

BLAST of Lag0014845 vs. ExPASy Swiss-Prot
Match: Q9SF09 (Amino acid transporter ANT1 OS=Arabidopsis thaliana OX=3702 GN=ANT1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-14
Identity = 51/141 (36.17%), Postives = 75/141 (53.19%), Query Frame = 0


Query: 3   PGLLSAI-VKLGLCINLFFTMPLMMNPAYEIVERRFSR------------------GRYC 62
           P   SAI V++GLC+ L FT P+M++P  EI+E++  R                   ++ 
Sbjct: 289 PNNWSAIAVQIGLCVGLTFTFPIMVHPLNEIIEQKLKRIDWLQKHHNGYSNETGSVSKFA 348

Query: 63  VW-LRWLLVVLATLMAMWVPNFTDFLSLVGSGLCCSLGFVLPAFFHLLVFKEEMGWKGWC 122
           ++  R LLVV    +A  VP F  F SLVGS LC  + FVLPA +HL +    +      
Sbjct: 349 IFTTRTLLVVGLAAIASLVPGFGTFASLVGSTLCALISFVLPASYHLTLLGPSLNVWNKS 408

Query: 123 VDVFIVVSGVVLGVAGTVSAV 124
           +DVFIV+ G++  V GT + +
Sbjct: 409 IDVFIVICGLIFAVYGTYNTI 429

The following BLAST results are available for this feature:

BLAST of Lag0014845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153351.2	2.7e-67	94.12	amino acid transporter AVT3B [Cucumis sativus] >KGN43344.1 hypothetical protein ...	[more]
XP_008447834.1	3.6e-67	93.38	PREDICTED: amino acid transporter ANTL1 [Cucumis melo] >TYK23281.1 amino acid tr...	[more]
XP_038888481.1	1.0e-66	93.38	amino acid transporter AVT3B-like [Benincasa hispida]	[more]
XP_022969105.1	2.6e-62	91.47	amino acid transporter AVT3B-like [Cucurbita maxima]	[more]
XP_023554485.1	2.6e-62	91.47	amino acid transporter AVT3B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0014845 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVG0	2.3e-45	67.69	Amino acid transporter AVT3C OS=Arabidopsis thaliana OX=3702 GN=AVT3C PE=1 SV=1	[more]
F4ILY9	2.9e-43	64.57	Amino acid transporter AVT3B OS=Arabidopsis thaliana OX=3702 GN=AVT3B PE=2 SV=1	[more]
Q9FKY3	3.5e-33	53.08	Amino acid transporter AVT3A OS=Arabidopsis thaliana OX=3702 GN=AVT3A PE=1 SV=1	[more]
Q9SF09	8.1e-14	36.17	Amino acid transporter ANT1 OS=Arabidopsis thaliana OX=3702 GN=ANT1 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 6..120 e-value: 6.4E-19 score: 68.0
None	No IPR available	PANTHER	PTHR22950	AMINO ACID TRANSPORTER	coord: 1..129
None	No IPR available	PANTHER	PTHR22950:SF529	AMINO ACID TRANSPORTER AVT3B	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0014845.1	Lag0014845.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity
molecular_function	GO:0015293	symporter activity