Lag0014800 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014800
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRING-type domain-containing protein
Locationchr12: 4757697 .. 4758080 (-)
RNA-Seq ExpressionLag0014800
SyntenyLag0014800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGCTTGGCGTTAGGTCGAGGTCCAATGTGCATGGCCACCATTGTCTTCTTCACTTGTGTATGGATCCCTCTGTGTCAACTGAAAACAACCATCGAGAGCGTGATCGGTATACTGTTAGGCAGGACGTCTCAGCCACTCACGACGGAGTCGCCACCGTTCGAGGTAAAACTTCCGGTTTGTAGGTTCGAAGAGCTGCAGCGAGGGGGTGGATTGGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCAGGGAAGATTTGGTTAGCCAACTGCATAGATGTAGCCATGTTTTCCATTTGGAGTGTATTGAGAATTGGCTCCATAGAAGTCACTTTACCTGCCCTCTCTGCCGATCCTTCCTCTTCTCAACATTGTAA

mRNA sequence

ATGATAAGCTTGGCGTTAGGTCGAGGTCCAATGTGCATGGCCACCATTGTCTTCTTCACTTGTGTATGGATCCCTCTGTGTCAACTGAAAACAACCATCGAGAGCGTGATCGGTATACTGTTAGGCAGGACGTCTCAGCCACTCACGACGGAGTCGCCACCGTTCGAGGTAAAACTTCCGGTTTGTAGGTTCGAAGAGCTGCAGCGAGGGGGTGGATTGGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCAGGGAAGATTTGGTTAGCCAACTGCATAGATGTAGCCATGTTTTCCATTTGGAGTGTATTGAGAATTGGCTCCATAGAAGTCACTTTACCTGCCCTCTCTGCCGATCCTTCCTCTTCTCAACATTGTAA

Coding sequence (CDS)

ATGATAAGCTTGGCGTTAGGTCGAGGTCCAATGTGCATGGCCACCATTGTCTTCTTCACTTGTGTATGGATCCCTCTGTGTCAACTGAAAACAACCATCGAGAGCGTGATCGGTATACTGTTAGGCAGGACGTCTCAGCCACTCACGACGGAGTCGCCACCGTTCGAGGTAAAACTTCCGGTTTGTAGGTTCGAAGAGCTGCAGCGAGGGGGTGGATTGGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCAGGGAAGATTTGGTTAGCCAACTGCATAGATGTAGCCATGTTTTCCATTTGGAGTGTATTGAGAATTGGCTCCATAGAAGTCACTTTACCTGCCCTCTCTGCCGATCCTTCCTCTTCTCAACATTGTAA

Protein sequence

MISLALGRGPMCMATIVFFTCVWIPLCQLKTTIESVIGILLGRTSQPLTTESPPFEVKLPVCRFEELQRGGGLEDICSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHRSHFTCPLCRSFLFSTL
Homology
BLAST of Lag0014800 vs. NCBI nr
Match: KAG6589096.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 8.0e-29
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 1  MISLALGRGPMCMATIVFFTCVWIPLCQLKTTIESVIGILLGRTSQPLTTESPPFEVKLP 60
          MISLALGRGP C+ATIV FTCVWIPLCQLKT +ES+IGIL GRT Q LT E  P EVKLP
Sbjct: 1  MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61 VCRFEELQRGGGL-EDICSVCLAEFTREDLVSQLH 95
          VCRF+EL RG    EDICSVCLA FT EDL   +H
Sbjct: 61 VCRFKELHRGSASEEDICSVCLAGFTGEDLTKMIH 95

BLAST of Lag0014800 vs. NCBI nr
Match: KAG7022803.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-28
Identity = 69/91 (75.82%), Postives = 74/91 (81.32%), Query Frame = 0

Query: 1  MISLALGRGPMCMATIVFFTCVWIPLCQLKTTIESVIGILLGRTSQPLTTESPPFEVKLP 60
          MISLALGRGP C+ATIV FTCVWIPLCQLKT +ES+IGIL GRT Q LT E  P EVKLP
Sbjct: 1  MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61 VCRFEELQRGGGL-EDICSVCLAEFTREDLV 91
          VCRFEEL RG    EDICSVCLA +T EDL+
Sbjct: 61 VCRFEELHRGSASEEDICSVCLAGYTGEDLI 91

BLAST of Lag0014800 vs. NCBI nr
Match: CAB4291060.1 (unnamed protein product [Prunus armeniaca] >CAB4321379.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 62/132 (46.97%), Postives = 85/132 (64.39%), Query Frame = 0

Query: 1   MISLALGRGPMCMATIVFFTCVWIPLCQLKTTIESVIGILLGRTSQPLTTESPPFEVKLP 60
           MI L + +  + MATI F+TC WIPL Q+K  +  ++G +   T +    E    ++ LP
Sbjct: 1   MICLMVSQSHLSMATIFFYTCFWIPLLQMKRALARLVGFVFFFTCK---VEQEEDQMCLP 60

Query: 61  VCRFEELQRGG-------GLEDICSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHRSH 120
           V RF++LQ  G        LE+ CS+CL EF +ED+VSQL +C HVFH++CIE W+ RSH
Sbjct: 61  VARFQDLQDHGCLRCGQEALEETCSICLVEFEKEDVVSQLSKCGHVFHMDCIERWIERSH 120

Query: 121 FTCPLCRSFLFS 126
           FTCP+CRS  FS
Sbjct: 121 FTCPICRSLFFS 129

BLAST of Lag0014800 vs. NCBI nr
Match: MBA0556883.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-26
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 0

Query: 1   MISLALGRGPMCMATIVFFTCVWIPLCQLKTTIESVIGILLGRTSQPLTTESPPFEVKLP 60
           MISL       C A ++F+TCVWIP  Q K  + S++G +  R+S  +        V LP
Sbjct: 1   MISLLCSNSGSCTAALIFYTCVWIPFIQFKRFVLSLLGFVFPRSSGRI-------NVSLP 60

Query: 61  VCRFEELQRGGGL-----EDICSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHRSHFT 120
           V RFE+L+   G      E++CS+CL EF  +D VSQ+ +C HVFH+ CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSFLFSTL 128
           CPLCRS LF+ +
Sbjct: 121 CPLCRSVLFNNV 125

BLAST of Lag0014800 vs. NCBI nr
Match: VVA26628.1 (PREDICTED: AP-1 complex subunit [Prunus dulcis])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-26
Identity = 63/134 (47.01%), Postives = 85/134 (63.43%), Query Frame = 0

Query: 1   MISLALGRGPMCMATIVFFTCVWIPLCQLKTTIESVIGILLGRTSQPLTTESPP--FEVK 60
           MI L + +  + MATI F+TC WIPL Q+K  +  ++G +   T Q    E      ++ 
Sbjct: 1   MICLMVSQSHLSMATIFFYTCFWIPLLQMKRALARLVGFVFFFTCQVEQEEDQMGCNQMC 60

Query: 61  LPVCRFEELQRGG-------GLEDICSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHR 120
           LPV RF++LQ  G        LE+ CS+CL EF +ED+VSQL +C HVFH++CIE W+ R
Sbjct: 61  LPVARFQDLQDHGSLRCGQEALEETCSICLVEFEKEDVVSQLSKCGHVFHMDCIERWIER 120

Query: 121 SHFTCPLCRSFLFS 126
           SHFTCP+CRS  FS
Sbjct: 121 SHFTCPICRSLFFS 134

BLAST of Lag0014800 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 52/135 (38.52%), Postives = 69/135 (51.11%), Query Frame = 0

Query: 1   MISLALGRGPMCMATIVFFTCVWIPLCQLKTT----------IESVIGILLGRTSQPLTT 60
           MIS+   R P+C A IVF+TCV IPL +LK              +++G++ G   +    
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHDDDGYNLVGVMFGDKEK---- 60

Query: 61  ESPPFEVKLPVCRFEELQRGGGLEDICSVCLAEFTREDLVSQLHRCSHVFHLECIENWLH 120
                         EE       E  C +CL EF  ED V+ L RC+H+FH+ CIE WL 
Sbjct: 61  --------------EE-------EICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLL 110

Query: 121 RSHFTCPLCRSFLFS 126
           R H TCPLCRSF+ +
Sbjct: 121 RGHLTCPLCRSFVLA 110

BLAST of Lag0014800 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 77  CSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHRSHFTCPLCRSFLFSTL 128
           C+VCL EF  ED +  L +CSH FH++CI+ WL  SH TCPLCRS L S L
Sbjct: 134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDL 183

BLAST of Lag0014800 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-10
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 77  CSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHRSHFTCPLCRSFLFS 126
           C VCL EF  ED +  L +CSH FH+ECI+ WL  SH TCPLCRS L S
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL-LSHSTCPLCRSNLLS 173

BLAST of Lag0014800 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-10
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 59  LPVCRFEELQRGGGLEDICSVCLAEFTREDLVSQLHRCSHVFHLECIENWLHRSHFTCPL 118
           LPV  ++E+ +G      C+VCL EF+ +D +  L  CSH FH++CI+ WL  S+ TCPL
Sbjct: 127 LPVFLYKEI-KGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWL-LSNSTCPL 186

Query: 119 CRSFLFS 126
           CR  LFS
Sbjct: 187 CRGTLFS 191

BLAST of Lag0014800 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-10
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 59  LPVCRFEEL--QRGGGLED-------ICSVCLAEFTREDLVSQLHRCSHVFHLECIENWL 118
           LPV  ++E+    GGG  +        C+VCL EF+ +D +  L  CSH FHL CI+ WL
Sbjct: 116 LPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWL 175

Query: 119 HRSHFTCPLCRSFLFS 126
            +S+ TCPLCR  LFS
Sbjct: 176 -QSNSTCPLCRGTLFS 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589096.18.0e-2973.68AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7022803.14.0e-2875.82AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
CAB4291060.11.3e-2646.97unnamed protein product [Prunus armeniaca] >CAB4321379.1 unnamed protein product... [more]
MBA0556883.13.7e-2645.45hypothetical protein [Gossypium lobatum][more]
VVA26628.13.7e-2647.01PREDICTED: AP-1 complex subunit [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Q9SZL41.5e-1738.52RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1[more]
Q940Q41.3e-1058.82RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2[more]
Q9ZV533.9e-1061.22Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P... [more]
Q8GW385.1e-1047.76RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1[more]
Q9FL076.6e-1046.05RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 77..119
e-value: 1.4E-4
score: 31.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 76..120
e-value: 2.4E-11
score: 43.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 77..120
score: 12.858103
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 44..124
e-value: 4.8E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR45969:SF9ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEINcoord: 1..124
NoneNo IPR availablePANTHERPTHR45969RING ZINC FINGER PROTEIN-RELATEDcoord: 1..124
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 76..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014800.1Lag0014800.1mRNA