Lag0014762 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0014762
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMediator of RNA polymerase II transcription subunit 9
Locationchr12: 4444669 .. 4446454 (+)
RNA-Seq ExpressionLag0014762
SyntenyLag0014762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATGTTGGAACTTGATTTTGCTTTTATATGTATGCGTAGGCTAGAGTGTACTCTGTTTAACTGTGTTCTTCATGTGCTTGACATAACAAATCCGTCTCTGCAAATGAGATGTACGAATTTAACTGAAATATAGATGTCATTTTTTAAAGTTTTGCTTTATTAGTGTGAATGTTAGTGATTATGGTTTCTAAGACAATAGGTTTTAGTAGGACATAGTTTAATTTTTGTTTTTGTATGGAAAGAGATGATGTGGGATATAATTTATAACCAGCTAACTCTTTACAGTATCATATTCTCCAAAAAAAAAAAAAAAAAAAGAAACTCTTAACACTATCATGTGCACACCATTAACCTATGGACTGGTTTTTTTGTAGGCTCACCAGGACTCTAAGAAATGTTCTATTTCCCTCTTCTTTTATGACTTCTTTTGGAGGGGAGGGGGGGGGGGGATGTTGGGGGTTGTGGTTCTTGATATGTTTTCTTGTAAAAAAGGGTAAGCTATTAGTTTTTTCTTTGGTTGCAGACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAATTCATCGAAGGTATGGTGGTAACCATTTTTTGCCTGTTGTTTGCATTAAATCGTCTTATTCATCAATGTCCCTATTAATGATTCTCTATTCAAATAGGGAACTGATTGGCAAGTATAAGAATTCTGTTGAAGAGCCTTTAAAGGGTGAGCCTTAAGCTACTTCTCAACCATTCCTCATTAGGTAATACTGTAACTATATTTGTTCTGTTTCTTTTCTGTTTATCTCAATGGTCAGAACACTTTTTCTTTTTTCCTCCTGTTATTATCATTACCCGTTTTGTTAATATAAGAAATAGCGAAATCTTAATATATGCTATGCTAGCAGAATCTTGTTATCATTCATGAGCATCCACTTGAACCCTGAATCTAGACGCATATCAATAGCGAAATCTCAACATGCTAATGCACACATACCAAAACTTTGATTGATCATACGAACTTTCTGTTGAGGAATTTAAATACCAGCTTTTGTGCGTTCACGACATTATGTGTTGTTAGTAAGTTCTCATGATGACATGAAAGAGCATATGTATTACAGGCTGCTGTGGATTCTGTCTTATAAATTCGTATGTTCTGTTAGAAAGAGGGGGTTCTCTGTTTTGTAATCACCTTAGCATTGAGTTGAGGGTTAGAGTTGCACTGCTACTTCCCCTCTTTCATTCCTTTTCAATGCAAAAGCGTTTCTTGTTTAAAAGGCCGGTTCAAAGTCGCATACAACCAAGATTGTCGTATTGATCCATTATTTGTTGCTCTTGAATTTCTTAGGTGTTACTTTTGATTGCTGCACAAATAGTTACACCGTCAACAGATTTTTTGAGCCGGTATGAAATGACTTTCTAAGTGCTTAAAAAAGGACTTAAGTGTTAAAAAAAGGTGTTTTGAAACACTTGAAAAGTCATTCCAAATAGGTTTTTGGGATGTAAGAAATAGTAATGTCATGCTTATATATGGTTGGAGTTGACCTCTGGTTTTGAATATCTCCAATCAATTCAATGCGTGCTTTTGTTCAATTTTGGCTCAGACTCATTTGAATTCAAACTTGCCTTTACAATATTTGTCTTTTCTACTGTTTCCCACAAACTTGTTCTACTGACTTATCTATTCTACACTATTTCAGGTCTGGCTAGCATCATTTACCCTTGAAGGGATGCCAAAAGAGCTTTTCCCTGAGTCGTGCAATTCCATGGAGTGGCTTTTATATCTAATCTGA

mRNA sequence

ATGACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAATTCATCGAAGGGAACTGATTGGCAAGTATAAGAATTCTGTTGAAGAGCCTTTAAAGGGTGTTACTTTTGATTGCTGCACAAATAGTTACACCGTCAACAGATTTTTTGAGCCGGTCTGGCTAGCATCATTTACCCTTGAAGGGATGCCAAAAGAGCTTTTCCCTGAGTCGTGCAATTCCATGGAGTGGCTTTTATATCTAATCTGA

Coding sequence (CDS)

ATGACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAATTCATCGAAGGGAACTGATTGGCAAGTATAAGAATTCTGTTGAAGAGCCTTTAAAGGGTGTTACTTTTGATTGCTGCACAAATAGTTACACCGTCAACAGATTTTTTGAGCCGGTCTGGCTAGCATCATTTACCCTTGAAGGGATGCCAAAAGAGCTTTTCCCTGAGTCGTGCAATTCCATGGAGTGGCTTTTATATCTAATCTGA

Protein sequence

MTVEGQKKKLEEHEQLLIHRRELIGKYKNSVEEPLKGVTFDCCTNSYTVNRFFEPVWLASFTLEGMPKELFPESCNSMEWLLYLI
Homology
[Close]
BLAST of Lag0014762 vs. NCBI nr
Match: XP_016900408.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1   MTVEGQKKKLEEHEQLLIHRRELIGKYKNSVEEPLKG 38
           MTVEGQKKKLEEHEQLL HRRELIGKYKNSVEE +KG
Sbjct: 220 MTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKG 256

[Close]
BLAST of Lag0014762 vs. NCBI nr
Match: XP_011652352.2 (mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651289.1 hypothetical protein Csa_002589 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1   MTVEGQKKKLEEHEQLLIHRRELIGKYKNSVEEPLKG 38
           MTVEGQKKKLEEHEQLL HRRELIGKYKNSVEE +KG
Sbjct: 226 MTVEGQKKKLEEHEQLLSHRRELIGKYKNSVEELVKG 262

[Close]
BLAST of Lag0014762 vs. NCBI nr
Match: KAG6574160.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1   MTVEGQKKKLEEHEQLLIHRRELIGKYKNSVEEPLKG 38
           MTVEGQKKKLEEHEQLL HRRELIGKYKNSVEE +KG
Sbjct: 203 MTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKG 239

[Close]
BLAST of Lag0014762 vs. NCBI nr
Match: XP_022944890.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1   MTVEGQKKKLEEHEQLLIHRRELIGKYKNSVEEPLKG 38
           MTVEGQKKKLEEHEQLL HRRELIGKYKNSVEE +KG
Sbjct: 205 MTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKG 241

[Close]
BLAST of Lag0014762 vs. NCBI nr
Match: XP_038903145.1 (mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1   MTVEGQKKKLEEHEQLLIHRRELIGKYKNSVEEPLKG 38
           MTVEGQKKKLEEHEQLL HRRELIGKYKNSVEE +KG
Sbjct: 229 MTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKG 265

The following BLAST results are available for this feature:
BLAST of Lag0014762 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900408.12.3e-0891.89PREDICTED: mediator of RNA polymerase II transcription subunit 9, partial [Cucum... [more]
XP_011652352.22.3e-0891.89mediator of RNA polymerase II transcription subunit 9 [Cucumis sativus] >KAE8651... [more]
KAG6574160.13.1e-0891.89Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyro... [more]
XP_022944890.13.1e-0891.89mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata][more]
XP_038903145.13.1e-0891.89mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida][more]
BLAST of Lag0014762 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0014762.1Lag0014762.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity